New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3521815 =	33 (0.740)	3 (0.070)	3/246	NT	9.9%	coding (158/540 nt)	hofN	DNA utilization protein HofN
	?	NC_000913	3521857 =	24 (0.580)					coding (116/540 nt)	hofN	DNA utilization protein HofN

TTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAA  >  NC_000913/3521673‑3521952                                                                                                                                               |                                                                                                                                          ttCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCaaaa                                                                                                                                           <  1:85113/143‑1 (MQ=255)   ccAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCCGAAGCAAAACt                                                                                                                                         >  1:863257/1‑143 (MQ=255)     aGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTgg                                                                                                                                       >  2:510516/1‑142 (MQ=255)      gcgcAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAGACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCg                                                                                                                                      <  2:671790/143‑1 (MQ=255)      gcgcAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCg                                                                                                                                      >  1:788081/1‑143 (MQ=255)         gcttgggatggcgtactgaggaacccgccaattaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgtagcgcctctgctgctggccgtcgggataacgctaatACTGCGTCt                                                                                                                                   >  2:705795‑M1/135‑143 (MQ=255)          aGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCCGCAAACGTGGCTTCGTTATCTGTTAGCTGCGTGCGAGTTGTTGTTCCCCCTGAAGCAAACCTCCGTCTa                                                                                                                                  >  1:517791/1‑143 (MQ=255)              tGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGGGGCTATgct                                                                                                                              >  2:740840/1‑142 (MQ=255)               gCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGTGCACCTGCAGATGCTCCAGCAAACGTGGCTTCGTGATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATgcgc                                                                                                                             <  1:201246/143‑1 (MQ=255)               gCCAGGCGCGTGTAAATTGTCGCTGGCGCTGCCGGTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATgcgc                                                                                                                             <  2:596919/143‑1 (MQ=255)                 cAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCATTCTTTGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATgcgcgc                                                                                                                           <  2:767582/143‑1 (MQ=255)                     cgcgGGTGTTTTTTCTCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCg                                                                                                                       <  2:135000/143‑1 (MQ=255)                      gcgGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTGGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCgg                                                                                                                      <  2:163942/143‑1 (MQ=255)                       cgGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTCTGCGCGCTTCGgc                                                                                                                     >  2:400835/1‑143 (MQ=255)                          gtagacggTCGCGGGCGCGGCCGGTGCGAGCGCTGTTCGCGGAGCTGCTGGTGCTCCAGCAAACGGGGCTGCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCt                                                                                                                  <  1:718969/136‑1 (MQ=255)                            aaaTTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGATGTTGTGCCGCGTGAAGCAAACCTGCGTCGATGCGCGCTTCGGCGCTga                                                                                                                >  2:855523/1‑142 (MQ=255)                                  tCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCa                                                                                                          >  1:212307/1‑143 (MQ=255)                                   cgcgGGCGCGGCCGTTGCGAGCGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTTATCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAg                                                                                                         <  2:310952/143‑1 (MQ=255)                                    gCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTACGGGAGAAATGTAATTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGa                                                                                                        >  1:302884/1‑143 (MQ=255)                                        ttaattttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataacgctaatACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCa                                                                                                    >  1:797757‑M1/104‑143 (MQ=255)                                        gcgcTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCa                                                                                                    <  1:687978/143‑1 (MQ=255)                                         tacttttttgccctggcgacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggataacgctaatACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAg                                                                                                   >  2:452917‑M1/103‑143 (MQ=255)                                         cgcTGCCGTTGCGAACGCTGTTGGTGATACTGCCTTTCCTCCAGCATGGGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAg                                                                                                   <  1:120492/143‑1 (MQ=255)                                              ccGTTGCGGACGCTGTTGGCGTAACTGCTGTTGCTCCAGGAATCGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTa                                                                                              <  2:349033/143‑1 (MQ=255)                                               tttgccctggctacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggatagcgctaatACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAg                                                                                             >  2:779199‑M1/97‑143 (MQ=255)                                                ggtGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGc                                                                                            <  1:139392/141‑1 (MQ=255)                                                gTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGc                                                                                            <  1:231226/143‑1 (MQ=255)                                                   gCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGACTAAAGCAAAACGACGTCTATGCGCGCTTAGGCGCTGCCTGTCAGACGCAGTATTAGCggt                                                                                         >  1:267639/1‑141 (MQ=255)                                                      gccGCTGTTCGCGTGACTGCTGTTGCTCCAGCAGACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATc                                                                                      <  2:160513/141‑1 (MQ=255)                                                            gTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAACACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGCATTCCCGGTAGCCCGACg                                                                                >  2:474668/1‑143 (MQ=255)                                                              tCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTCATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGc                                                                              <  1:740840/143‑1 (MQ=255)                                                                gcttAACTGCTGTTTCTCCATCAACCCTGCTTTGGTCATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCTTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTATCGTTATCCCGACGGCca                                                                            <  2:521394/140‑1 (MQ=255)                                                                    gacggctgGTGGTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCcagcag                                                                        <  2:610020/139‑1 (MQ=255)                                                                                    gcgaagctGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAAc                                                        <  2:300908/136‑1 (MQ=255)                                                                                           tGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCa                                                 >  1:339938/1‑143 (MQ=255)                                                                                           tGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCa                                                 >  2:235551/1‑143 (MQ=255)                                                                                             gCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTAAACACACGCTGGTTGTGTTCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAAc                                               <  1:200094/143‑1 (MQ=255)                                                                                                 cGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCCGCAACCAGa                                           >  1:346283/1‑143 (MQ=255)                                                                                                                 cGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGAGTCTATGCGCGCTTCAGCGCTGCCTGCCAGACGCCATATTAGAGTTGTCTCGTCGGCCAGCAGCAGAGGCGCAACGAACATAAGCAAGCAGAAACACAGAAAAGCgga                           >  2:816024/1‑142 (MQ=255)                                                                                                                            ttggtCCGCCTGAAGCAAAACCGCGGCTACGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCt                <  1:765579/143‑1 (MQ=255)                                                                                                                                          gCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCTAGGGCata  >  1:451045/1‑141 (MQ=255)                                                                                                                                               |                                                                                                                                          TTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAA  >  NC_000913/3521673‑3521952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.