New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3521815 =	33 (0.740)	3 (0.070)	3/246	NT	9.9%	coding (158/540 nt)	hofN	DNA utilization protein HofN
	?	NC_000913	3521857 =	24 (0.580)					coding (116/540 nt)	hofN	DNA utilization protein HofN

CCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCATCAGTACGCCTTCCCAAGC  >  NC_000913/3521718‑3521990                                                                                                                                            |                                                                                                                                      ccGTTGCGGACGCTGTTGGCGTAACTGCTGTTGCTCCAGGAATCGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTa                                                                                                                                    <  2:349033/143‑1 (MQ=255)  tttgccctggctacagcaacgccggaccgcttttctgcgtttctggttgctgatgttcgttgcgcctctgctgctggccgtcgggatagcgctaatACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAg                                                                                                                                   >  2:779199‑M1/97‑143 (MQ=255)   ggtGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGc                                                                                                                                  <  1:139392/141‑1 (MQ=255)   gTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGc                                                                                                                                  <  1:231226/143‑1 (MQ=255)      gCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGACTAAAGCAAAACGACGTCTATGCGCGCTTAGGCGCTGCCTGTCAGACGCAGTATTAGCggt                                                                                                                               >  1:267639/1‑141 (MQ=255)         gccGCTGTTCGCGTGACTGCTGTTGCTCCAGCAGACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATc                                                                                                                            <  2:160513/141‑1 (MQ=255)               gTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAACACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGCATTCCCGGTAGCCCGACg                                                                                                                      >  2:474668/1‑143 (MQ=255)                 tCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTCATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGc                                                                                                                    <  1:740840/143‑1 (MQ=255)                   gcttAACTGCTGTTTCTCCATCAACCCTGCTTTGGTCATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCTTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTATCGTTATCCCGACGGCca                                                                                                                  <  2:521394/140‑1 (MQ=255)                       gacggctgGTGGTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCcagcag                                                                                                              <  2:610020/139‑1 (MQ=255)                                       gcgaagctGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAAc                                                                                              <  2:300908/136‑1 (MQ=255)                                              tGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCa                                                                                       >  1:339938/1‑143 (MQ=255)                                              tGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCa                                                                                       >  2:235551/1‑143 (MQ=255)                                                gCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTAAACACACGCTGGTTGTGTTCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAAc                                                                                     <  1:200094/143‑1 (MQ=255)                                                    cGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCCGCAACCAGa                                                                                 >  1:346283/1‑143 (MQ=255)                                                                    cGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGAGTCTATGCGCGCTTCAGCGCTGCCTGCCAGACGCCATATTAGAGTTGTCTCGTCGGCCAGCAGCAGAGGCGCAACGAACATAAGCAAGCAGAAACACAGAAAAGCgga                                                                 >  2:816024/1‑142 (MQ=255)                                                                               ttggtCCGCCTGAAGCAAAACCGCGGCTACGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCt                                                      <  1:765579/143‑1 (MQ=255)                                                                                             gCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCTAGGGCata                                        >  1:451045/1‑141 (MQ=255)                                                                                             ctaatactgcgtctgacaggcagcgccgaagcgcgcatagacgcagtATTAGCGCTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTAGCCAGGGCaaa                                        >  2:779199‑M2/48‑143 (MQ=255)                                                                                                   ctgcgtctgacaggcagcgccgaagcgcgcatagacgcagtATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAaagta                                  >  2:452917‑M2/42‑143 (MQ=255)                                                                                                    tgcgtctgacaggcagcgccgaagcgcgcatagacgcagtATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAaattaa                                 >  1:797757‑M2/41‑143 (MQ=255)                                                                                                             gcgcgcTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGt                        <  2:788081/143‑1 (MQ=255)                                                                                                                 gcTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTtcat                    <  2:448215/143‑1 (MQ=255)                                                                                                                    tCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCGTCAg                 >  1:680037/1‑143 (MQ=255)                                                                                                                     cGGCGCTGCCTGTCAGACGCAGTATTAGCGTTACCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCATCAGt                <  1:467732/143‑1 (MQ=255)                                                                                                                      ggCGCTGCCTGTCAGACGCAGTATTAGCGTTACCCCGACGGCCAGCAGCAGCGCCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGCTCCTGTCGCCAGGGCAAAAAATTAATCGCCGGGCTCATCCGTa               >  2:862323/1‑143 (MQ=255)                                                                                                                      ggCGCGGCCTGTCGGACGGAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCATCAGTa               <  2:361580/143‑1 (MQ=255)                                                                                                                       gcgcTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAGAATTAATTGGCGGGTTCATCAGtcc              >  1:140255/1‑141 (MQ=255)                                                                                                                        cgcTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTGGCTGTCGCCAGGGCACAGAATGCATTGGCGGCCTCATCAGTACg             >  1:513719/1‑143 (MQ=255)                                                                                                                                gTCAGACGCAGTATTAGCGTTATCCAGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACAAGAAACGCAGAAAAGCGGTCCGGCGATGCTATCGCCGCGGCAGAAAAGTCATTGGAGAGCTCACGAGTACGCCTGcccg     >  1:199876/1‑142 (MQ=255)                                                                                                                                   agacgcagtATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCTACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCCTCAGTACGCCATCCCAAgc  >  2:705795‑M2/10‑143 (MQ=255)                                                                                                                                            |                                                                                                                                      CCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCGAGTTGTTGTTCCGCCTGAAGCAAAACTGCGTCTATGCGCGCTTCGGCGCTGCCTGTCAGACGCAGTATTAGCGTTATCCCGACGGCCAGCAGCAGAGGCGCAACGAACATCAGCAACCAGAAACGCAGAAAAGCGGTCCGGCGTTGCTGTCGCCAGGGCAAAAAATTAATTGGCGGGTTCATCAGTACGCCTTCCCAAGC  >  NC_000913/3521718‑3521990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.