New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3741088	NA (NA)	4 (0.100)	3/244	NT	NA	intergenic (+130/+21)	avtA/ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
	?	NC_000913	= 3741092	NA (NA)					intergenic (+134/+17)	avtA/ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA

TGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATC  >  NC_000913/3740946‑3741228                                                                                                                                               |                                                                                                                                             tgggggTCACTAATAATTGCCTGATGTGCTTCGCTTATCAGGCCTACAGGGTGTCTGCGATATATTGATTTTGTACGGAGTTGTAGGCGGGATAAGGCGTTTACGCCGCATCTGGCATAAACAATGCGCACTGTTGCGGCGtt                                                                                                                                              <  2:304357/138‑1 (MQ=14) tGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATCTGTAGGCCGGATAAGGCGTCTACGCCGCATCTGGCATAAACACAGCGCACTGTTCCGGCGTT                                                                                                                                              >  1:89272‑M1/1‑143 (MQ=255)     aGTCACTAAACATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtctc                                                                                                                                          <  1:469820‑M1/143‑5 (MQ=255)      gTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCACCTGGCATAAACCAAGCGCACTGTCCCGGCGTTcagac                                                                                                                                         >  2:128905‑M1/1‑138 (MQ=255)        cACTAAAAATTGCCTGACGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAACGCGCACTGTTCCGGCGTTGAGAaac                                                                                                                                       >  1:56260‑M2/1‑140 (MQ=255)            aaagagtGCCTGATGCGCTCCGCTTATCATGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCg                                                                                                                                   <  2:571987/137‑1 (MQ=255)            aaaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtctcaacgccg                                                                                                                                   <  1:189609‑M1/143‑12 (MQ=255)            aaaaaTGGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtctcaacgccg                                                                                                                                   <  2:706538‑M1/143‑12 (MQ=255)                  tGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAAc                                                                                                                             <  2:521035/143‑1 (MQ=255)                  tGCCTGATGCGCTACGCTTATCAGGCCGACATGATTTCTGCAATATTTTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAAc                                                                                                                             <  1:703220/143‑1 (MQ=255)                    ccTGATGCGCTACGCGTATCAGGCCTACATGCTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt                                                                                                                           <  1:546761/143‑1 (MQ=255)                      tGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGttt                                                                                                                         <  1:267851/143‑1 (MQ=255)                      tGATGCGCTACGCTTATCAGGCCTACAAGATTACTGCAATATGTTGAATTTGGAAGAATTTGTAAGCCGGATAAGGCGTTTACGCCGCATCTGGCATATCCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGatt                                                                                                                         >  1:661019/1‑143 (MQ=18)                         tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCaa                                                                                                                      <  2:66850/143‑1 (MQ=255)                         tGCGCTAAGCTTATCAGGCCTACATGAGTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCaa                                                                                                                      <  1:815594/143‑1 (MQ=255)                            gcgactcTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa                                                                                                                   <  2:517284/137‑1 (MQ=255)                            gcTACGCTTATCAGGCCTGCCTGATTGCGGCTATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCGCTGTTTCTTTCTTTAGAAACGCCGGAAAACGTTTCAAACa                                                                                                                   <  2:271771/143‑1 (MQ=18)                                    tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAACGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg                                                                                                           >  2:488630/1‑143 (MQ=255)                                    tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg                                                                                                           <  1:563331/143‑1 (MQ=255)                                     aTCAGGCCTACATGATTTCTGCAATATATTGATTTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc                                                                                                          >  2:459716/1‑143 (MQ=255)                                     aTCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc                                                                                                          >  2:137257/1‑143 (MQ=255)                                      tCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACACCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgctgctctc                                                                                                         >  2:441285/1‑140 (MQ=255)                                        aGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATACGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt                                                                                                       >  1:744284/1‑143 (MQ=255)                                           cgtACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGTGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGc                                                                                                    <  1:208170/141‑1 (MQ=255)                                           ccTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGAAAGACGTTTGAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGc                                                                                                    <  1:449043/143‑1 (MQ=37)                                              aCATGATTTCTGCAATATATTGAATCTCGAATAGTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa                                                                                                 <  1:829774/143‑1 (MQ=255)                                                aTGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCCCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGTAAAACGCTTCAAACAGGCTGCTGCCGCCGCCGCTg                                                                                               >  1:328286/1‑143 (MQ=25)                                                   aTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCGGGCGTTGAGAAACGCCGGAAAACGTTTCAAAAAGGGTGCTGCCGTAGCCGATGcag                                                                                            >  2:594808/1‑141 (MQ=255)                                                            atatatTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACttt                                                                                   <  1:587275/143‑1 (MQ=255)                                                               tatTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGGACTAtctc                                                                                >  2:703346/1‑143 (MQ=255)                                                                      tttGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATcc                                                                         >  2:834463/1‑143 (MQ=255)                                                                           aagaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtctcaacgccggaacagtg                                                                                                                           >  1:845881‑M1/1‑69 (MQ=255)                                                                           aagaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTtctcaacgccggaacagtg                                                                                                                           <  2:845881‑M1/88‑20 (MQ=255)                                                                                   gTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCAtgcaatgcaaag                                                            >  1:628904/1‑141 (MQ=255)                                                                                    gaGGCCGGATAAGGCGGTTACGCCGCATCTGGCATAAACAGAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGc                                                           <  2:204748/142‑1 (MQ=255)                                                                                     aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGcc                                                          <  1:459716/143‑1 (MQ=255)                                                                                       gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCtt                                                        >  1:825969/1‑143 (MQ=255)                                                                                        cggtaTAAGGCGTGGTCGTCGCATCGGGGATAAGCGAGGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCttt                                                       <  2:603932/139‑1 (MQ=255)                                                                                        ccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGCTTCAAACAGGCTGCTGCCGTAGCAGAAGCCGACGCACTTTCTCGACATCGATGCACTGCAACGccact                                                       >  2:177283/1‑140 (MQ=38)                                                                                                tgCGTTTCCGCGGCATCTCGTATAATCAAGCCGCCCTGTTCCGGCGTTGAGGCACGCCCGAAAACGTTTCTAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCa                                               <  2:749205/142‑1 (MQ=255)                                                                                                     ttACGCCGCATCTGGCATAAACAAAGCGCACTGCTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                          <  1:622452/143‑1 (MQ=255)                                                                                                        ggctgcgtCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCaa                                       <  1:825949/136‑1 (MQ=255)                                                                                                           cggagccggCATAAACACAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAacac                                    <  1:126495/136‑1 (MQ=255)                                                                                                             cATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAg                                  <  1:792702/143‑1 (MQ=255)                                                                                                                     aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTCTGTCGGGCAGGCTTCAACACAGGCCGGTcc                          >  2:78462/1‑143 (MQ=255)                                                                                                                            aaGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGCTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGCCATCCCTGCCCCGCAACGCCCCCGTCGCGCAGGCCTCAACCCCGGCCGGcccccccccc                   >  2:31144/1‑137 (MQ=255)                                                                                                                                 cACTGTTCCGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattctt                                                                     <  2:845881‑M2/88‑70 (MQ=255)                                                                                                                                 cACTGTTCCGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattctt                                                                     >  1:845881‑M2/1‑19 (MQ=255)                                                                                                                                  aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGc             <  1:29350/143‑1 (MQ=255)                                                                                                                                         cGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggccattttt      <  2:706538‑M2/143‑133 (MQ=255)                                                                                                                                         cGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggcaattttt      <  1:189609‑M2/143‑133 (MQ=255)                                                                                                                                         cGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACCCAGGCCGGTCCCGTCTCCCGATGCCAGcaca      >  1:171752/1‑143 (MQ=255)                                                                                                                                         cGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGACCCGTCTCCAGATACCCGcaca      >  1:720996/1‑143 (MQ=255)                                                                                                                                             gTTtctcaacgccggaacagtgcgcgttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcgtcaggcaatttttagtg  >  1:56260‑M1/1‑3 (MQ=255)                                                                                                                                               |                                                                                                                                             TGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATC  >  NC_000913/3740946‑3741228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.