New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3741088	NA (NA)	4 (0.100)	3/244	NT	NA	intergenic (+130/+21)	avtA/ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA
	?	NC_000913	= 3741092	NA (NA)					intergenic (+134/+17)	avtA/ysaA	valine‑‑pyruvate aminotransferase/putative electron transport protein YsaA

CACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCA  >  NC_000913/3740953‑3741231                                                                                                                                            |                                                                                                                                            cACTAAAAATTGCCTGACGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAACGCGCACTGTTCCGGCGTTGAGAaac                                                                                                                                          >  1:56260‑M2/1‑140 (MQ=255)     aaagagtGCCTGATGCGCTCCGCTTATCATGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCg                                                                                                                                      <  2:571987/137‑1 (MQ=255)           tGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAAc                                                                                                                                <  2:521035/143‑1 (MQ=255)           tGCCTGATGCGCTACGCTTATCAGGCCGACATGATTTCTGCAATATTTTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAAc                                                                                                                                <  1:703220/143‑1 (MQ=255)             ccTGATGCGCTACGCGTATCAGGCCTACATGCTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt                                                                                                                              <  1:546761/143‑1 (MQ=255)               tGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGttt                                                                                                                            <  1:267851/143‑1 (MQ=255)               tGATGCGCTACGCTTATCAGGCCTACAAGATTACTGCAATATGTTGAATTTGGAAGAATTTGTAAGCCGGATAAGGCGTTTACGCCGCATCTGGCATATCCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGatt                                                                                                                            >  1:661019/1‑143 (MQ=18)                  tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCaa                                                                                                                         <  2:66850/143‑1 (MQ=255)                  tGCGCTAAGCTTATCAGGCCTACATGAGTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCaa                                                                                                                         <  1:815594/143‑1 (MQ=255)                     gcgactcTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa                                                                                                                      <  2:517284/137‑1 (MQ=255)                     gcTACGCTTATCAGGCCTGCCTGATTGCGGCTATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCGCTGTTTCTTTCTTTAGAAACGCCGGAAAACGTTTCAAACa                                                                                                                      <  2:271771/143‑1 (MQ=18)                             tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAACGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg                                                                                                              >  2:488630/1‑143 (MQ=255)                             tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGctgctg                                                                                                              <  1:563331/143‑1 (MQ=255)                              aTCAGGCCTACATGATTTCTGCAATATATTGATTTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc                                                                                                             >  2:459716/1‑143 (MQ=255)                              aTCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCtgctgc                                                                                                             >  2:137257/1‑143 (MQ=255)                               tCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACACCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGgctgctctc                                                                                                            >  2:441285/1‑140 (MQ=255)                                 aGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATACGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGt                                                                                                          >  1:744284/1‑143 (MQ=255)                                    cgtACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGTGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGc                                                                                                       <  1:208170/141‑1 (MQ=255)                                    ccTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGAAAGACGTTTGAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGc                                                                                                       <  1:449043/143‑1 (MQ=37)                                       aCATGATTTCTGCAATATATTGAATCTCGAATAGTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa                                                                                                    <  1:829774/143‑1 (MQ=255)                                         aTGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCCCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGTAAAACGCTTCAAACAGGCTGCTGCCGCCGCCGCTg                                                                                                  >  1:328286/1‑143 (MQ=25)                                            aTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCGGGCGTTGAGAAACGCCGGAAAACGTTTCAAAAAGGGTGCTGCCGTAGCCGATGcag                                                                                               >  2:594808/1‑141 (MQ=255)                                                     atatatTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACttt                                                                                      <  1:587275/143‑1 (MQ=255)                                                        tatTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGGACTAtctc                                                                                   >  2:703346/1‑143 (MQ=255)                                                               tttGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATcc                                                                            >  2:834463/1‑143 (MQ=255)                                                                            gTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCAtgcaatgcaaag                                                               >  1:628904/1‑141 (MQ=255)                                                                             gaGGCCGGATAAGGCGGTTACGCCGCATCTGGCATAAACAGAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGc                                                              <  2:204748/142‑1 (MQ=255)                                                                              aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGcc                                                             <  1:459716/143‑1 (MQ=255)                                                                                gCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCtt                                                           >  1:825969/1‑143 (MQ=255)                                                                                 cggtaTAAGGCGTGGTCGTCGCATCGGGGATAAGCGAGGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCttt                                                          <  2:603932/139‑1 (MQ=255)                                                                                 ccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGCTTCAAACAGGCTGCTGCCGTAGCAGAAGCCGACGCACTTTCTCGACATCGATGCACTGCAACGccact                                                          >  2:177283/1‑140 (MQ=38)                                                                                         tgCGTTTCCGCGGCATCTCGTATAATCAAGCCGCCCTGTTCCGGCGTTGAGGCACGCCCGAAAACGTTTCTAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCa                                                  <  2:749205/142‑1 (MQ=255)                                                                                              ttACGCCGCATCTGGCATAAACAAAGCGCACTGCTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                             <  1:622452/143‑1 (MQ=255)                                                                                                 ggctgcgtCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCaa                                          <  1:825949/136‑1 (MQ=255)                                                                                                    cggagccggCATAAACACAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAacac                                       <  1:126495/136‑1 (MQ=255)                                                                                                      cATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAg                                     <  1:792702/143‑1 (MQ=255)                                                                                                              aTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTCTGTCGGGCAGGCTTCAACACAGGCCGGTcc                             >  2:78462/1‑143 (MQ=255)                                                                                                                     aaGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGCTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGCCATCCCTGCCCCGCAACGCCCCCGTCGCGCAGGCCTCAACCCCGGCCGGcccccccccc                      >  2:31144/1‑137 (MQ=255)                                                                                                                          cACTGTTCCGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattctt                                                                        <  2:845881‑M2/88‑70 (MQ=255)                                                                                                                          cACTGTTCCGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattctt                                                                        >  1:845881‑M2/1‑19 (MQ=255)                                                                                                                           aCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGc                <  1:29350/143‑1 (MQ=255)                                                                                                                                  cGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggccattttt         <  2:706538‑M2/143‑133 (MQ=255)                                                                                                                                  cGGCGTTGAGAaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggcaattttt         <  1:189609‑M2/143‑133 (MQ=255)                                                                                                                                  cGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACCCAGGCCGGTCCCGTCTCCCGATGCCAGcaca         >  1:171752/1‑143 (MQ=255)                                                                                                                                  cGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGACCCGTCTCCAGATACCCGcaca         >  1:720996/1‑143 (MQ=255)                                                                                                                                         gagaaacgccggaacagtgcgctttgtttatgccagatgcggcgtaaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggcaatgtttagtgact  <  1:469820‑M2/143‑140 (MQ=255)                                                                                                                                            |                                                                                                                                            CACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCA  >  NC_000913/3740953‑3741231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.