New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 5723252070 (46.590)18 (0.440) 15/244 NT 0.91% intergenic (+74/‑43) ybcM/ylcH DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH
?NC_000913 = 572334 2010 (48.980)intergenic (+83/‑34) ybcM/ylcH DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2727 total aligned reads displayed.

AAAGATTTCATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTC  >  NC_000913/572190‑572476
                                                                                                                                                |                                                                                                                                              
  aGATTTCATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTATTAAGAAGGAGCAATTCTATCGATTTTGATTTTAGGAAATAAACAAGGCATACTTATGTCACAGGAGCCTGaacaa                                                                                                                                                >  2:310126/1‑143 (MQ=255)
      ttCATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAActcc                                                                                                                                            <  1:152388‑M2/143‑5 (MQ=255)
       tCATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAActccg                                                                                                                                           >  2:486555‑M2/1‑138 (MQ=255)
        cATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAATAAGGAGCAATTCTATCGATTTTGATATTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCAGAACAActccgg                                                                                                                                          <  2:222974‑M2/143‑7 (MQ=255)
         aTAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATACTTATGTCTTCAGAGCCTGAACAActccggt                                                                                                                                         >  2:536028‑M2/1‑136 (MQ=255)
         aTAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAActccggt                                                                                                                                         >  1:122509‑M2/1‑136 (MQ=255)
           aaTCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTGTGAGTTTGGGAAATCAACACGGCATAATTAGGTCACCGGAGCCTGAACAActccggtga                                                                                                                                       >  1:627349‑M2/1‑134 (MQ=255)
            aTCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAActccggtgac                                                                                                                                      <  2:449516‑M2/143‑11 (MQ=255)
            aTCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAACAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCGGAAGAActccggccac                                                                                                                                      <  2:32498‑M2/143‑11 (MQ=255)
                 cttAATATAACAACAAGAGAGATAAGAAAACCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTg                                                                                                                                 <  2:41933/142‑1 (MQ=255)
                      tataACACCAAGAGAGATAAGAAAAGCTTGCAGAGAGAAAAAGTCTATTAAGAAGGAGCAATTCTATCCATTTTGATTTTGACAAATCAACACGGCAAAATCATGTCACCCGAACCTGAAAAACTCCGGTGACTTCAGCGCTa                                                                                                                            >  2:51705/1‑143 (MQ=255)
                        taACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTaaa                                                                                                                          <  1:576077/143‑1 (MQ=255)
                         aaCACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAAc                                                                                                                         >  1:746193/1‑143 (MQ=255)
                           cacCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACgg                                                                                                                       <  1:802713/143‑1 (MQ=255)
                             ccACGAGAGAAAAGAAAAGCGTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATGCTGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACgggg                                                                                                                     <  1:278311/143‑1 (MQ=255)
                             ccAAGAGAGATAAGAAAAGCTTCCAGAGCGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAGATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACgggg                                                                                                                     >  1:13653/1‑143 (MQ=255)
                              cgagagagATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGa                                                                                                                    <  1:172866/141‑1 (MQ=255)
                               aaGAGAGATAAGAAAAGCTTCCAGCGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGGGACTTCTGCGCTAAACGGGGAc                                                                                                                   >  2:501145/1‑143 (MQ=255)
                                   gagaCAGGAACAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTAGGAAAGCAACACGGCATAATTATGTCACCGGAGCCTCAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGttt                                                                                                               <  2:350095/143‑1 (MQ=255)
                                    agaTAAGAAAAGCTTCCCGCGTGTCGCCGTCTTTCAAGCAGGAGCCATTCTGTCGATGTTGAGTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTa                                                                                                              <  1:549123/143‑1 (MQ=255)
                                      aTAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATg                                                                                                            <  1:644011/143‑1 (MQ=255)
                                      aTAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATg                                                                                                            >  2:553747/1‑143 (MQ=255)
                                       tAAGAATAGCTTCCAGAGAGTAACAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATgc                                                                                                           <  2:656772/143‑1 (MQ=255)
                                       tAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGCTTATgc                                                                                                           >  2:603800/1‑143 (MQ=255)
                                        aaGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCAGAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAGCGGGGACGTTTATgcg                                                                                                          >  1:559960/1‑143 (MQ=255)
                                         aGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATgcgc                                                                                                         >  2:238758/1‑143 (MQ=255)
                                          gAAAGGCTTTCGGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGCTTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGca                                                                                                        <  2:121999/143‑1 (MQ=255)
                                          gAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAACCGGGGACGTTTATGCGca                                                                                                        >  1:387018/1‑143 (MQ=255)
                                                  tCCAGGGAGTAAAAGTGTTTGAAGAAGGAGCGATGCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACGCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAAt                                                                                                <  2:199572/143‑1 (MQ=255)
                                                  tCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACaac                                                                                                <  1:601892/143‑2 (MQ=255)
                                                  tCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCACACATACAAt                                                                                                <  1:436529/143‑1 (MQ=255)
                                                   ccAGAGAGTAAAAGGGGTTTAAGAAGCAGCAAGGCTATCGATTGTGCTTTCGCGAAATCAACCCGGCATAATTAGGTCACCGGAGCCTGAACCACTCCGGTGACTTCTGCGCTAAACGGGTACGTTTATGCGCACATACAATc                                                                                               <  1:31143/143‑1 (MQ=255)
                                                     agagagTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCa                                                                                             >  1:216631/1‑143 (MQ=255)
                                                      gagagTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATGCaa                                                                                            >  2:156140/1‑143 (MQ=255)
                                                      gagagTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCaa                                                                                            >  1:475702/1‑143 (MQ=255)
                                                      gagagTAAAAGTGTTTTAAGAAGGAGCAATTCGATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCaa                                                                                            <  2:292434/143‑1 (MQ=255)
                                                         atgacaaGGGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAAct                                                                                         <  2:680234/138‑1 (MQ=255)
                                                         agTAAAAGTGTTTTAAGAAGCAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAAct                                                                                         <  1:771368/143‑1 (MQ=255)
                                                           tAAAAGCGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAActct                                                                                       <  1:423942/143‑1 (MQ=255)
                                                            aaaaGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGCGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAActctc                                                                                      >  2:860729/1‑143 (MQ=255)
                                                                gtgtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCtcttct                                                                                  <  1:199627/143‑1 (MQ=255)
                                                                 tgtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGCCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTtctc                                                                                 <  1:372313/143‑1 (MQ=255)
                                                                 tgtTCTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTtctc                                                                                 <  1:674420/143‑1 (MQ=255)
                                                                     ttAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACGGGAGCCTGAAAAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTGATGCGCACATACAATCCAAACTCTCGTCTCCCtt                                                                             >  2:263097/1‑143 (MQ=255)
                                                                       aagaagGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCCAACTCTCTTCTCCCTTca                                                                           >  1:101703/1‑143 (MQ=255)
                                                                        agaagGAGCAATTGTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTcac                                                                          <  2:434966/143‑1 (MQ=255)
                                                                        agaagGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTcac                                                                          <  2:585986/143‑1 (MQ=255)
                                                                         gAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCCCACATACAATCCAAACTCCCTTCTCCCTTCACA                                                                         >  2:876692‑M1/1‑143 (MQ=255)
                                                                          aaGGAGCAATTGTATCGATTTGGATTTTGGGAGATCAACACGGCATAACTATGTCACCGGAGCCTGAACAACTCCGAAGAATTATTTGTTAATCGGGGACGTTTATGCGCACATACAATCCAAACGCTCTTCTCCCTTCACAG                                                                        <  2:186500‑M1/143‑1 (MQ=255)
                                                                          aaGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTGTATGCGCACATACAATCCAAACTCTCTTCTCCCTTAACAG                                                                        >  1:491666‑M1/1‑143 (MQ=255)
                                                                             ctgcaATTCTATGGCTTTAGATTGTGAGGAATCCACATGGCATAATCATGTCAGCGGAGGCTGAACAACTCCGGTGACTTCTGCGCTAAACGGAGACGTTTATGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATG                                                                     <  2:138814‑M1/141‑1 (MQ=255)
                                                                              aGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCCCAGATGC                                                                    >  2:794067‑M1/1‑143 (MQ=255)
                                                                               gCAATTCTATCGATTTTGATTTTGGGAAATCAACCCGGCATCATTATGTCACCGGAGCCTGAACAACTCCGCTGACCTCTGCGCTAAACGGGGACGTTTATGCGCACATACAGTCCAAACTCCCTTCTCCCTTCACCGATccc                                                                   >  1:519941‑M1/1‑140 (MQ=255)
                                                                                   ttCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGaaa                                                               >  2:383429/1‑143 (MQ=255)
                                                                                   ttCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGaaa                                                               >  1:87175/1‑143 (MQ=255)
                                                                                   ttCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGaaa                                                               <  1:718143/143‑1 (MQ=255)
                                                                                   ttCGATCGATTTTGATTTTGGGAAATCAACACGGCATCATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGaaa                                                               <  2:400651/143‑1 (MQ=255)
                                                                                    tCTATCGATGTGGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCCGAACAACTCCTGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAAt                                                              <  1:448451/143‑1 (MQ=255)
                                                                                        tCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCAc                                                          <  1:91578/143‑1 (MQ=255)
                                                                                          gattttgattttGAGAAATCAACACGGAATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACATCTACGCTAAACGGGGACGTATATGCGCACATACAAACCAAAATCTCTTCTCACAGGACAGATGCAGAAATACaaag                                                        >  2:168572/1‑140 (MQ=255)
                                                                                                 attttgGGAAATCAACACGGCATAATTATGCCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTc                                                 <  2:279070/143‑1 (MQ=255)
                                                                                                  ttttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGCTGCAGAAATGCACCTGCAATTCt                                                >  2:699776/1‑143 (MQ=255)
                                                                                                  ttttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTCCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGCAGTGCAGCTGCACTTCt                                                >  1:322328/1‑143 (MQ=255)
                                                                                                  tgttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCt                                                <  2:752782/141‑1 (MQ=255)
                                                                                                  tgttgGGAAATCAACACGGCATAATGATGTCACCGGAGCCTGAACAGCTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCt                                                <  2:776960/141‑1 (MQ=255)
                                                                                                   tttgGGAAATCAACACGGCATACTTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCtt                                               <  1:534102/143‑1 (MQ=255)
                                                                                                   tttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCtt                                               <  2:84641/143‑1 (MQ=255)
                                                                                                    ctggGAAAGCAACACGGCATAATTGTGGCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCgaattgcaggtgcatttctgc                                               <  1:233217‑M1/142‑22 (MQ=255)
                                                                                                      gggAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTtgc                                            >  1:613338‑M2/1‑140 (MQ=255)
                                                                                                          aaTCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCCCAGATGCAGTAATGCACCTGCAATTCTTtgcatct                                        <  1:731302‑M2/143‑8 (MQ=255)
                                                                                                             cAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGc                                     <  1:336519/143‑1 (MQ=255)
                                                                                                             cAACACGGCATAAGTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGc                                     <  1:656528/143‑1 (MQ=255)
                                                                                                              aaCACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCACCTAGCg                                    >  1:822682/1‑143 (MQ=255)
                                                                                                              aaCACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCGTTGCATCTAGCg                                    >  1:706574/1‑143 (MQ=255)
                                                                                                               acacGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTGTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGt                                   <  1:855279/143‑1 (MQ=255)
                                                                                                                cacGTCATAATTATGTCACCGGAGCCTGAACAAATCCGGTGACTTCTGCGCTAAGCGCGGAAGATTATGCACACATGAAATCCAAACTCTCTTCTCCCTTTGAATAAAAAGAAATGCACCTGCAATTCTTTGCATCTAGCGtt                                  <  2:106007/143‑1 (MQ=255)
                                                                                                                cacGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTGGCGtt                                  <  1:786104/143‑1 (MQ=255)
                                                                                                                 acGGCATAATTATGTCACCGGAGCCTGAACAGCTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGttt                                 <  2:472017/143‑1 (MQ=255)
                                                                                                                 acGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGTTTGTTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGttt                                 <  2:620788/143‑1 (MQ=255)
                                                                                                                    gCATTATTATGTCACCGGAGCGTGAGCTACTCCGGTGACTTCTGCGCTCAACGGGGACGTTTATGCGCACATACAGTCCAAACTCTCTTCTCCCTTCACAGAGGCAGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGAc                              <  2:366125/143‑1 (MQ=255)
                                                                                                                    gCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGAc                              <  2:569055/143‑1 (MQ=255)
                                                                                                                         aTTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTg                         <  2:765743/143‑1 (MQ=255)
                                                                                                                         aTTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTg                         <  1:349294/143‑1 (MQ=255)
                                                                                                                           tATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCACTGCg                       <  2:732724/143‑1 (MQ=255)
                                                                                                                               tCACCGGAGCCTGAACAActccggtgacataattatgccgtgttgatttcccaaaatcaaaatcgatagaattgctccttcttaaaacacttttactctctggaagcttttcttatctctcttggtgttatattaaaacgatt                   <  1:840382‑M2/143‑126 (MQ=255)
                                                                                                                               tCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAgg                   <  1:759159/143‑1 (MQ=255)
                                                                                                                                  ccGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                <  1:246616/143‑1 (MQ=255)
                                                                                                                                  ccGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                >  2:822368/1‑143 (MQ=255)
                                                                                                                                      aGCGTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCg            <  2:637747/143‑1 (MQ=255)
                                                                                                                                          tGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa        <  2:338347/143‑1 (MQ=255)
                                                                                                                                           gAACAACTCCGGTGGCCTCTGAGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCCCCCTTCACAGCTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC       >  1:270439‑M2/1‑143 (MQ=255)
                                                                                                                                           gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC       >  1:507118‑M2/1‑143 (MQ=255)
                                                                                                                                            aacaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCTGAAGTGAACCAGCAAACCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt      <  1:404445‑M2/143‑2 (MQ=255)
                                                                                                                                            aacaacTCCGGTGACTGCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAGACTCTCTTCTCCCTTCACAGATGCAGGAATGCTCCTGCAATTCGTTGCATCTAGCGTTTTACCTCTGCGGAGGGGAAGCGTGAACt      >  1:186388‑M2/1‑142 (MQ=255)
                                                                                                                                             acagcTCCGGGGACTTCTGCGCTAGACGGGGACGTTTATGCGCACAGACAATCCAAACTCTCTTCTCCCTTCACAGGTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtg     >  2:250867‑M2/1‑141 (MQ=255)
                                                                                                                                             acaacTCCGGTAACGTTTGCGCTAACCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTATGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtg     >  2:719499‑M2/1‑141 (MQ=255)
                                                                                                                                               aacTCCGGTGACTTCTGCTCTAAACGGGGACGTTTATGCGCACCTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCCATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat   >  1:291517‑M2/1‑139 (MQ=255)
                                                                                                                                               aacTCCGGTGACTTCTGCGCTAAACGGGTACGTTTATGCGCACATGCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat   >  1:458966‑M2/1‑139 (MQ=255)
                                                                                                                                               aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat   >  1:35886‑M2/1‑139 (MQ=255)
                                                                                                                                                acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc  >  1:689267‑M2/1‑138 (MQ=255)
                                                                                                                                                |                                                                                                                                              
AAAGATTTCATAATCGTTTTAATATAACACCAAGAGAGATAAGAAAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTC  >  NC_000913/572190‑572476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.