New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2191628	45 (0.960)	3 (0.070)	3/252	NT	6.5%	coding (18/720 nt)	yehC	putative fimbrial chaperone YehC
	?	NC_000913	= 2191637	43 (0.960)					coding (9/720 nt)	yehC	putative fimbrial chaperone YehC

TTCTTTATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGAATAG  >  NC_000913/2191496‑2191777                                                                                                                                              |                                                                                                                                             ttcttTATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAg                                                                                                                                             <  2:255209‑M2/143‑2 (MQ=255) gtcttTATTTTCTGCCGGGTAAATAATGCGCGTCCCGGAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAAGAAGCCTTTCATTTGAATGCCTCTTAAATTAAAAGACCGCCATTGGagag                                                                                                                                             >  2:439068/2‑143 (MQ=255)  tcttTATTTTCTGCCGGGTAAATAATGCGCGTCCTTTAGATAACAATTCCGGCATGTGCAGGAAAGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgc                                                                                                                                            >  2:738648‑M2/1‑141 (MQ=255)    tttATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCAGCCATGGGATAgcgg                                                                                                                                          <  1:553645‑M2/143‑5 (MQ=255)    tttATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTACACGGAGGACCATCGAAAAAAGTAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcgg                                                                                                                                          <  1:425189‑M2/143‑5 (MQ=255)     ttATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAACAGGCCCCCATGGGGTGgcggc                                                                                                                                         <  1:567781‑M2/143‑6 (MQ=255)     ttATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcggc                                                                                                                                         >  1:893940‑M2/1‑138 (MQ=255)     ttATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcggc                                                                                                                                         <  1:595226‑M2/143‑6 (MQ=255)        atttCTGCCGGGTAAATAATGCGCGCCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCAt                                                                                                                                      <  2:613614/142‑1 (MQ=255)         tttCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCCCCATGGAATAGCGGCCATg                                                                                                                                     >  2:94241/1‑143 (MQ=255)                  ggTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTCTTAcc                                                                                                                            >  2:623793/1‑143 (MQ=255)                          atGCGCGTCCCGTAGATAAGAATTCTGGCAGGTGCAGGAAGGACCATTGCCAAAATGAGTACAGATAACTGCCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGaaa                                                                                                                    <  2:649824/143‑1 (MQ=255)                           tGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAAc                                                                                                                   <  1:318027/143‑1 (MQ=255)                            gcgcGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCGTGTTTATTACCTGGAGAAACt                                                                                                                  >  1:841418/1‑143 (MQ=255)                              gcgTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTa                                                                                                                <  1:305557/143‑1 (MQ=255)                                        ggtAACATTTCCGGCATTCTCACGAATGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATTGCTCTTAAATTAATAGGCCGCTGTTTTATTTTGGCCATGTTTATTACCTGGAGAAACTTACAATtttatt                                                                                                      <  2:196898/141‑1 (MQ=255)                                        gATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATtttatt                                                                                                      <  1:579458/143‑1 (MQ=255)                                        gATAACAACTCCCCCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAATAGGTCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATtttatt                                                                                                      <  1:579279/143‑1 (MQ=255)                                          tAACAATTCCGGCATGTGCAGGAATGACCATAGAAAAAATGAGTAACGATAATAGGCCTTTCATTTTAATGCCTCTTAAATTCAAAGGCCTCCACGGGATTGCGGCCATGTTTATTACCTGGAGAAACTTACAATtttattta                                                                                                    <  2:599610/143‑1 (MQ=255)                                           aaCAAGTCCGGCATGTACAAGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTttatttat                                                                                                   <  2:675776/143‑1 (MQ=255)                                               aTTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGACCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAAt                                                                                               >  2:663494/1‑143 (MQ=255)                                                    ggCATGTGCAGGAAGGACCATAGAAAAAATGGGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTgc                                                                                          <  2:661563/143‑1 (MQ=255)                                                         gtgCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCcac                                                                                     <  1:518315/143‑1 (MQ=255)                                                          tgCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCcaca                                                                                    >  1:37934/1‑143 (MQ=255)                                                            cAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCATACg                                                                                  >  1:104640/1‑143 (MQ=255)                                                              ggaaggaCCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTCATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCa                                                                                >  2:100077/1‑143 (MQ=255)                                                                      taTAGAAAAAATGAGTGAAGATAATAATCCTCTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCaga                                                                        <  2:727007/142‑1 (MQ=255)                                                                       aTAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATACCTCTTAAATTAAAAGGCCGCCATGGAAAAACAACCATTTTTATTAACTGAAAAAACTTACAATAATATTTATTAATACTGCTCCACACGCATAACAagaa                                                                       >  2:498064/1‑142 (MQ=255)                                                                          gAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCAGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCAGCGCCACACGCATAACCAGagaag                                                                    >  2:908350/1‑143 (MQ=255)                                                                           aaaaaaTGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGcgaaga                                                                   >  1:116707/1‑143 (MQ=255)                                                                           aaaaaaTGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGAATAACCAGagaaga                                                                   >  2:355079/1‑143 (MQ=255)                                                                            aaaaaTGAGTAAAGATAATACCCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGAt                                                                  <  1:524233/143‑1 (MQ=255)                                                                                   aGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACAt                                                           <  1:67669/143‑1 (MQ=255)                                                                                   aGTAAAGATAATAATCCTGGCATGTTAATGGCGCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACAt                                                           <  1:218247/143‑1 (MQ=255)                                                                                    gTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGAAATGATTATTTCCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATc                                                          >  1:129162/1‑143 (MQ=255)                                                                                     tAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcggccttttaatttaagaggcattaaaatgaaaggattattatcttta                                                                                             >  2:683046‑M2/1‑58 (MQ=255)                                                                                     tAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcggccttttaatttaagaggcattaaaatgaaaggattattatcttta                                                                                             <  1:683046‑M2/107‑50 (MQ=255)                                                                                        aGATAATGTTCCTTTCATTTTAATGCCTCTTCTTTGATAATGTCTCCATTGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCt                                                      <  2:889222/143‑1 (MQ=255)                                                                                           taataaTCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGAt                                                   >  1:111895/1‑143 (MQ=255)                                                                                            aataatCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGAtt                                                  <  1:590527/143‑1 (MQ=255)                                                                                            aataatCCTTTCATTTTAATGCCTCTTAAATTAAAAAGCCGCCATGGGATAGCGGCCATGATTATAACGTTGAGACACTTAAAATTTTATTTATTAATCATGCGCAACACGCACAACCAAAGAAACAAACACATCAcaagaat                                                  >  2:693162/1‑137 (MQ=255)                                                                                                 tCCTTTCATTTTAATGCCTCTTAAGTTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACt                                             >  2:493911/1‑143 (MQ=255)                                                                                                   cTTTCGTGTTAAAGCCTCGTGAATGATTAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGa                                           <  2:100962/143‑1 (MQ=255)                                                                                                   cTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAgcggccttttaatttaagaggcattaaaatgaaaggattattatctttactcattttttctatggtccttcctgcacatgccggaattgttatctacgg                                           <  1:725984‑M2/143‑100 (MQ=255)                                                                                                   cTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGa                                           <  1:806677/143‑1 (MQ=255)                                                                                                    tttCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAg                                          >  2:822455/1‑143 (MQ=255)                                                                                                    tttCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAg                                          >  2:205454/1‑143 (MQ=255)                                                                                                     ttCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACGGAGt                                         >  2:565178/1‑143 (MQ=255)                                                                                                      tCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGtt                                        >  2:703454/1‑143 (MQ=255)                                                                                                        aTTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGATTATTACCTGGAGAAGAGTACAATTTTATTTAGTAATCGTGCGCCACACGCCTAACCAGCGAAGATAACACATCACCTGACTGAGCTGCGttcg                                      >  2:847803/1‑141 (MQ=255)                                                                                                                     ttaaattaaaAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAg                         <  2:660342/143‑1 (MQ=255)                                                                                                                     ttaaattaaaAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAg                         >  1:351491/1‑143 (MQ=255)                                                                                                                        aattaaaAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTa                      >  1:63435/1‑143 (MQ=255)                                                                                                                                    gccATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTaaa          <  2:111895/143‑1 (MQ=255)                                                                                                                                     ccATTGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTAAGATTCAGGTATTTTGCTTTAAAc         <  2:558818/143‑1 (MQ=255)                                                                                                                                         gggATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGaa     <  2:127641/143‑1 (MQ=255)                                                                                                                                           gATAGCGGCCATGTTGATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGCTAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGAATa   <  2:468320/143‑1 (MQ=255)                                                                                                                                            aTAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGAATAg  <  2:425189/143‑1 (MQ=255)                                                                                                                                            aTAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGAATAg  <  2:780571/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                             TTCTTTATTTTCTGCCGGGTAAATAATGCGCGTCCCGTAGATAACAATTCCGGCATGTGCAGGAAGGACCATAGAAAAAATGAGTAAAGATAATAATCCTTTCATTTTAATGCCTCTTAAATTAAAAGGCCGCCATGGGATAGCGGCCATGTTTATTACCTGGAGAAACTTACAATTTTATTTATTAATCCTGCGCCACACGCATAACCAGAGAAGATAACACATCACCTGATTGCACTGAGTTATCTGTCAGTTTCAGGTATTTTGCTTTAAACGGAATAG  >  NC_000913/2191496‑2191777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.