New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3847998	26 (0.760)	3 (0.090)	3/256	NT	10.5%	coding (627/1320 nt)	uhpC	inner membrane protein sensing glucose‑6‑phosphate
	?	NC_000913	= 3848018	26 (0.790)					coding (607/1320 nt)	uhpC	inner membrane protein sensing glucose‑6‑phosphate

TATACGGATTCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATG  >  NC_000913/3847871‑3848138                                                                                                                                |                                                                                                                                             tataCGGATTCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAgc                                                                                                                               <  1:13137/143‑1 (MQ=255)    aCGGATTCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAgccgc                                                                                                                            >  1:497359/1‑143 (MQ=255)    aCGGATTCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGGGGAGCAATTTCCAGCGCGCCGTGTCGCCATTCACCGACCGCCGGTCACCCCAACGCCTCCGGGCGCTCTCGTcgccgc                                                                                                                            >  2:23814/1‑143 (MQ=255)         ttCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCtggcggctacgcgatcgcccgca                                                                                                                       <  1:628110‑M1/143‑24 (MQ=255)                  acaTATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAAt                                                                                                              >  1:329542/1‑143 (MQ=255)                            tGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAACATCCCCACGACt                                                                                                    >  1:24243/1‑143 (MQ=255)                                                   ccTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCGGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAatcat                                                                             <  1:325728/143‑1 (MQ=255)                                                   ccTGCCCCTTCTTGGTGTTGAGCATTTTCCTGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAatcat                                                                             <  2:165721/143‑1 (MQ=255)                                                          ctcctcgttgctgCGCACTTCCCACCGCGTCGTCGCGCCATTCACCGACCGCCGGTAAACCTAGCGCCTGCGGGCGACCGCGTAGCCGCCAGCAGAGAACAATCCCCACGACTTTCGCCATACACCCAGCAATCATCATCCCg                                                                      <  2:13076/137‑1 (MQ=255)                                                                gttgttgAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGc                                                                <  2:329542/143‑1 (MQ=255)                                                                     tgggCATTTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGCCTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGcc                                                           <  2:562535/140‑1 (MQ=255)                                                                        gCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCtggcggctacgcgatcgcccgcag                                                                                                                      >  1:286156‑M1/1‑57 (MQ=255)                                                                        gCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCtggcggctacgcgatcgcccgcag                                                                                                                      <  2:286156‑M1/81‑25 (MQ=255)                                                                        gCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTGGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTa                                                        >  1:366908/1‑143 (MQ=255)                                                                           actccccgcgcGTCGTGTCCCCAGTCGCCGCCCGCGGTTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAATAGCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATg                                                     <  2:111638/136‑1 (MQ=255)                                                                                          tgtCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCAAGAAGAGGTTAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGGTGc                                      >  1:604804/1‑143 (MQ=255)                                                                                              gCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATc                                  >  1:475580/1‑143 (MQ=255)                                                                                               acATGCACCGACCGCCGGTAACTCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCCCGACTAGCGCCATACAACCAGCCATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATca                                 <  2:52141/142‑1 (MQ=255)                                                                                                    cACCGCCCGCCGGTAAACCTCACGCCTGCGGCCCATCGCGTAGCCCCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATg                            <  1:173824/143‑1 (MQ=255)                                                                                                    cACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGGAGCCGCTGCCAACACaacg                            >  1:193988/1‑141 (MQ=255)                                                                                                           cgccgGTAAGCCTAACGCCGGCGGGCGACCGCGGAGCCGCCCGCAGAGAAAAACCCCCCCGACTATCGCCATACAACCAGCAAGCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGa                     <  2:302743/143‑1 (MQ=255)                                                                                                            gccgGTAAACCTAACGCCTGCGGGCGAGCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAg                    <  2:266023/143‑1 (MQ=255)                                                                                                            gccgGTAAACCTAACGCCTGAGGACGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAg                    >  2:408895/1‑143 (MQ=255)                                                                                                             ccgGTAAACCTAACGCCTGCGGGCGACCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGt                   <  2:366908/143‑1 (MQ=255)                                                                                                               ggTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTCTCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTgc                 <  2:436983/143‑1 (MQ=255)                                                                                                                gTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGACATACAAGCAGCAATCATCATCCCGGCACACCAGCCGGAATGCAGCGCAGCCGCTGACAACACAATGGGCAGGAGGgcg                >  2:437310/1‑143 (MQ=255)                                                                                                                     ccTTACGCCGACGGGCGATCCGGTAGCCGCGAGCACAGCAAACTCCCCCCGACTATCGCCATACACCCAGCAATCCTCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATTTCTATGGGAATGAGTGCgccgcc           <  2:354629/143‑1 (MQ=255)                                                                                                                      cTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAAGGGGAATGAGTGCGccgacg          >  1:359022/1‑143 (MQ=255)                                                                                                                        aaCGCGTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGAc        <  1:41126/143‑1 (MQ=255)                                                                                                                             cTGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgc                                                                 >  1:286156‑M2/1‑24 (MQ=255)                                                                                                                             cTGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgc                                                                 <  2:286156‑M2/81‑58 (MQ=255)                                                                                                                              tGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgctcaacaacaagaaggggcagggttgacgcgtaaagagatcctcaccaaatatgtgttgctgaa  <  1:628110‑M2/143‑121 (MQ=255)                                                                                                                                |                                                                                                                                             TATACGGATTCAGCAACACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATG  >  NC_000913/3847871‑3848138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.