New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3847998	26 (0.760)	3 (0.090)	3/256	NT	10.5%	coding (627/1320 nt)	uhpC	inner membrane protein sensing glucose‑6‑phosphate
	?	NC_000913	= 3848018	26 (0.790)					coding (607/1320 nt)	uhpC	inner membrane protein sensing glucose‑6‑phosphate

ACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCA  >  NC_000913/3847888‑3848159                                                                                                                                   |                                                                                                                                              acaTATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAAt                                                                                                                                   >  1:329542/1‑143 (MQ=255)           tGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAACATCCCCACGACt                                                                                                                         >  1:24243/1‑143 (MQ=255)                                  ccTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCGGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAatcat                                                                                                  <  1:325728/143‑1 (MQ=255)                                  ccTGCCCCTTCTTGGTGTTGAGCATTTTCCTGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAatcat                                                                                                  <  2:165721/143‑1 (MQ=255)                                         ctcctcgttgctgCGCACTTCCCACCGCGTCGTCGCGCCATTCACCGACCGCCGGTAAACCTAGCGCCTGCGGGCGACCGCGTAGCCGCCAGCAGAGAACAATCCCCACGACTTTCGCCATACACCCAGCAATCATCATCCCg                                                                                           <  2:13076/137‑1 (MQ=255)                                               gttgttgAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGc                                                                                     <  2:329542/143‑1 (MQ=255)                                                    tgggCATTTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGCCTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGcc                                                                                <  2:562535/140‑1 (MQ=255)                                                       gCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTGGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTa                                                                             >  1:366908/1‑143 (MQ=255)                                                          actccccgcgcGTCGTGTCCCCAGTCGCCGCCCGCGGTTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAATAGCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATg                                                                          <  2:111638/136‑1 (MQ=255)                                                                         tgtCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCAAGAAGAGGTTAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGGTGc                                                           >  1:604804/1‑143 (MQ=255)                                                                             gCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATc                                                       >  1:475580/1‑143 (MQ=255)                                                                              acATGCACCGACCGCCGGTAACTCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCCCGACTAGCGCCATACAACCAGCCATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATca                                                      <  2:52141/142‑1 (MQ=255)                                                                                   cACCGCCCGCCGGTAAACCTCACGCCTGCGGCCCATCGCGTAGCCCCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATg                                                 <  1:173824/143‑1 (MQ=255)                                                                                   cACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGGAGCCGCTGCCAACACaacg                                                 >  1:193988/1‑141 (MQ=255)                                                                                          cgccgGTAAGCCTAACGCCGGCGGGCGACCGCGGAGCCGCCCGCAGAGAAAAACCCCCCCGACTATCGCCATACAACCAGCAAGCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGa                                          <  2:302743/143‑1 (MQ=255)                                                                                           gccgGTAAACCTAACGCCTGCGGGCGAGCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAg                                         <  2:266023/143‑1 (MQ=255)                                                                                           gccgGTAAACCTAACGCCTGAGGACGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAg                                         >  2:408895/1‑143 (MQ=255)                                                                                            ccgGTAAACCTAACGCCTGCGGGCGACCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGt                                        <  2:366908/143‑1 (MQ=255)                                                                                              ggTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTCTCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTgc                                      <  2:436983/143‑1 (MQ=255)                                                                                               gTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGACATACAAGCAGCAATCATCATCCCGGCACACCAGCCGGAATGCAGCGCAGCCGCTGACAACACAATGGGCAGGAGGgcg                                     >  2:437310/1‑143 (MQ=255)                                                                                                    ccTTACGCCGACGGGCGATCCGGTAGCCGCGAGCACAGCAAACTCCCCCCGACTATCGCCATACACCCAGCAATCCTCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATTTCTATGGGAATGAGTGCgccgcc                                <  2:354629/143‑1 (MQ=255)                                                                                                     cTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAAGGGGAATGAGTGCGccgacg                               >  1:359022/1‑143 (MQ=255)                                                                                                       aaCGCGTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGAc                             <  1:41126/143‑1 (MQ=255)                                                                                                            cTGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgc                                                                                      <  2:286156‑M2/81‑58 (MQ=255)                                                                                                            cTGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgc                                                                                      >  1:286156‑M2/1‑24 (MQ=255)                                                                                                             tGCGGGCGATCGCGTAGCCGCCAgcaggcgttaggtttaccggcggtcggtgaatggcgacacgacgcgctggaaattgctcaacaacaagaaggggcagggttgacgcgtaaagagatcctcaccaaatatgtgttgctgaa                       <  1:628110‑M2/143‑121 (MQ=255)                                                                                                                   cgctCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCgt                 <  1:353235/140‑1 (MQ=255)                                                                                                                       cgcgGAGCCGCGAGCAGAGAACGATCCCCGCGACCATCCCCATACAACCAGCGATCAGCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTc             <  2:393019/143‑1 (MQ=255)                                                                                                                          gTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGGATGAGTGCGCCGCCGACGTTATACGCCCTGTTccct          >  1:333141/1‑141 (MQ=255)                                                                                                                                  cagcagGGAAAACTCCCCACGCCACTCGCTTGTCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCcca  <  1:276698/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                              ACATATTTGGTGAGGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCA  >  NC_000913/3847888‑3848159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.