New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	304784 =	34 (1.000)	3 (0.090)	3/252	NT	8.6%	coding (422/711 nt)	ecpE	putative fimbrial chaperone EcpE
	?	NC_000913	304813 =	31 (0.950)					coding (393/711 nt)	ecpE	putative fimbrial chaperone EcpE

TCACATCCTGGCTTAATCAGTAGCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTC  >  NC_000913/304652‑304923                                                                                                                                     |                                                                                                                                            tCACCTCCCGGCTTAATCAGCAGCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCCCCTTGTCGAAGGACCATTTAAACTGCACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGt                                                                                                                                   <  1:338380/143‑1 (MQ=255) ctacctCCTGGCTTGAGCAGGAGCTGAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGt                                                                                                                                   <  2:70178/138‑1 (MQ=255)       ccTGGCTTAATCAGTAGCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCGATCACCACCACCGGCTCCGTGCTGAc                                                                                                                             >  2:640380/1‑143 (MQ=255)       ccTGGCTTAATCAGTAGCTCAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGAc                                                                                                                             <  1:385755/143‑1 (MQ=255)                  gggggagagcgagtattttaagttttactatcatggtccacgggataaccgcgagcgctactaccgggtctcatttcgcgaggtccccactcgtaaccatacaagacgcagcccaACCGGCTCCGTGCTGACCACGCCGCCgg                                                                                                                  >  2:254459‑M1/116‑143 (MQ=255)                       gCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAGTGGTATCCATCACCACCACCGGCTCGGGGCTGACCACGCCGCCGGTgggg                                                                                                             >  1:400993/1‑143 (MQ=255)                          tAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTg                                                                                                          >  1:592890/1‑143 (MQ=255)                             agtattttaaattttactatcatggtccacgggataaccgcgagcgctactaccgggtctcatttcgcgaggtccccactcgtaaccatacaagacgcagcccaACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGt                                                                                                       >  1:353414‑M1/105‑143 (MQ=255)                                aTGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCtt                                                                                                    >  1:560867/1‑143 (MQ=255)                                  gtgtTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAATCTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGt                                                                                                  <  2:86295/143‑1 (MQ=255)                                    gtTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTCTGGCTGCGTCTTGTAt                                                                                                >  1:650243/1‑143 (MQ=255)                                            tgtTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGCCTTGTATGGTTCCgc                                                                                        >  2:255965/1‑142 (MQ=255)                                            actatcatggtccacgggataaccgcgagcgctactaccgggtctcatttcgcgaggtccccactcgtaaccatacaagacgcagcccaACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGa                                                                                        >  1:31071‑M1/90‑143 (MQ=255)                                              ttacttacCGTTCCTGTCACCTTGTCGGAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTTTGGTTACGAGt                                                                                      >  2:229208/1‑143 (MQ=255)                                                aaatacCGGTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTgg                                                                                    <  1:376776/140‑1 (MQ=255)                                                 cttacCGTTCCTGTCGCCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTggg                                                                                   <  2:383374/143‑1 (MQ=255)                                                 cttacCGTGCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTggg                                                                                   <  2:391746/143‑1 (MQ=255)                                                  ttacCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTGCGAGTgggg                                                                                  >  1:129963/1‑143 (MQ=255)                                                           cTGTCAGCTTGTCAAAGCACCATTGAAACCGAACCGGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGTGCTGCGTCTTGCATGGTTACGAGTGGGGACCTCGCGa                                                                         <  1:159355/143‑1 (MQ=255)                                                            tGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGaa                                                                        <  1:471703/143‑1 (MQ=255)                                                              tCACCTTGTCGAAGTACTACTTAAACTGAACCTGACGTGGGCGTACTACCAGAATGGTATCCATCACCTCCACCGGCTCCGTGCTGACCACGCCGCCGGTTGTGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAAt                                                                      <  2:565272/143‑1 (MQ=255)                                                              gcgccgtGTCGAAGGACCAGTGCAACTGAACCTGACGTGGTCGTAGTACCAGAATGGTATCCATCACCACCACCGGCGCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAAt                                                                      <  1:92280/137‑1 (MQ=255)                                                               cACCTTGTCGAAGGATCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATg                                                                     <  1:376233/143‑1 (MQ=255)                                                                ccgttGTCGAAGGACCATTTAGACTGAGCCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATga                                                                    <  1:589088/140‑1 (MQ=255)                                                                        gAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTCCGTCTTGTATGGTTACGCGTCTGGACCTCGCGAAATGAGACCCgga                                                            >  1:404745/1‑142 (MQ=255)                                                                         aaGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGGCTTGGATGGTTACGAGAGGGGACCTCGCGAAAGGAGCCCCggca                                                           >  2:598788/1‑141 (MQ=255)                                                                         aaGGACCATTTAAACTGAACCTGACGTGGTCGTACTACAAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTCCGCGCGGGGACCCCCCGCAAAGACACCCGgtc                                                           >  1:258940/1‑142 (MQ=255)                                                                             aCCCTTTAAACTGATCCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGtagtag                                                       <  1:87364/143‑1 (MQ=255)                                                                               cATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAgcg                                                     >  1:192139/1‑143 (MQ=255)                                                                                   tAAACCGAACCTGACGCGGTCGTACTACCCGAATGGTATCCAGCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTcg                                                 <  2:642447/143‑1 (MQ=255)                                                                                      aCTGAACCTGACGTGGTCGTACTACCAGAAGGGTAGCCATCACCGCCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCgg                                              <  2:592890/143‑1 (MQ=255)                                                                                       cTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGt                                             <  2:560867/143‑1 (MQ=255)                                                                                                   tGGTCGTACTACCAGAATGGTATCCAGCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTGACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGAc                                 <  2:284814/143‑1 (MQ=255)                                                                                                               cAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTaaa                     >  1:462453/1‑143 (MQ=255)                                                                                                                  aaTGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTTGTCGCGCTCGCGCGTATCCCGTGGACCATGATAGTAAAAtg                  >  2:620356/1‑142 (MQ=255)                                                                                                                      gTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTGGTAGCGCGCGCGGTTATCCCGTGGAGCATGATAGTAAAATTGaaa              >  1:23699/1‑143 (MQ=255)                                                                                                                       tATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGAACCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTaaaa             >  1:81525/1‑143 (MQ=255)                                                                                                                                  accaccGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGCTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCtctc  <  2:225218/143‑1 (MQ=255)                                                                                                                                     |                                                                                                                                            TCACATCCTGGCTTAATCAGTAGCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTC  >  NC_000913/304652‑304923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.