New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	304784 =	34 (1.000)	3 (0.090)	3/252	NT	8.6%	coding (422/711 nt)	ecpE	putative fimbrial chaperone EcpE
	?	NC_000913	304813 =	31 (0.950)					coding (393/711 nt)	ecpE	putative fimbrial chaperone EcpE

GCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTCACCAGCCTGCAACGCCAGCTGGCGG  >  NC_000913/304674‑304948                                                                                                                                            |                                                                                                                                        gCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAGTGGTATCCATCACCACCACCGGCTCGGGGCTGACCACGCCGCCGGTgggg                                                                                                                                      >  1:400993/1‑143 (MQ=255)    tAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTg                                                                                                                                   >  1:592890/1‑143 (MQ=255)       agtattttaaattttactatcatggtccacgggataaccgcgagcgctactaccgggtctcatttcgcgaggtccccactcgtaaccatacaagacgcagcccaACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGt                                                                                                                                >  1:353414‑M1/105‑143 (MQ=255)          aTGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCtt                                                                                                                             >  1:560867/1‑143 (MQ=255)            gtgtTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAATCTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGt                                                                                                                           <  2:86295/143‑1 (MQ=255)              gtTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTCTGGCTGCGTCTTGTAt                                                                                                                         >  1:650243/1‑143 (MQ=255)                      tgtTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGCCTTGTATGGTTCCgc                                                                                                                 >  2:255965/1‑142 (MQ=255)                      actatcatggtccacgggataaccgcgagcgctactaccgggtctcatttcgcgaggtccccactcgtaaccatacaagacgcagcccaACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGa                                                                                                                 >  1:31071‑M1/90‑143 (MQ=255)                        ttacttacCGTTCCTGTCACCTTGTCGGAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTTTGGTTACGAGt                                                                                                               >  2:229208/1‑143 (MQ=255)                          aaatacCGGTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTgg                                                                                                             <  1:376776/140‑1 (MQ=255)                           cttacCGTTCCTGTCGCCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTggg                                                                                                            <  2:383374/143‑1 (MQ=255)                           cttacCGTGCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTggg                                                                                                            <  2:391746/143‑1 (MQ=255)                            ttacCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTGCGAGTgggg                                                                                                           >  1:129963/1‑143 (MQ=255)                                     cTGTCAGCTTGTCAAAGCACCATTGAAACCGAACCGGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGTGCTGCGTCTTGCATGGTTACGAGTGGGGACCTCGCGa                                                                                                  <  1:159355/143‑1 (MQ=255)                                      tGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGaa                                                                                                 <  1:471703/143‑1 (MQ=255)                                        tCACCTTGTCGAAGTACTACTTAAACTGAACCTGACGTGGGCGTACTACCAGAATGGTATCCATCACCTCCACCGGCTCCGTGCTGACCACGCCGCCGGTTGTGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAAt                                                                                               <  2:565272/143‑1 (MQ=255)                                        gcgccgtGTCGAAGGACCAGTGCAACTGAACCTGACGTGGTCGTAGTACCAGAATGGTATCCATCACCACCACCGGCGCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAAt                                                                                               <  1:92280/137‑1 (MQ=255)                                         cACCTTGTCGAAGGATCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATg                                                                                              <  1:376233/143‑1 (MQ=255)                                          ccgttGTCGAAGGACCATTTAGACTGAGCCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATga                                                                                             <  1:589088/140‑1 (MQ=255)                                                  gAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTCCGTCTTGTATGGTTACGCGTCTGGACCTCGCGAAATGAGACCCgga                                                                                     >  1:404745/1‑142 (MQ=255)                                                   aaGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGGCTTGGATGGTTACGAGAGGGGACCTCGCGAAAGGAGCCCCggca                                                                                    >  2:598788/1‑141 (MQ=255)                                                   aaGGACCATTTAAACTGAACCTGACGTGGTCGTACTACAAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTCCGCGCGGGGACCCCCCGCAAAGACACCCGgtc                                                                                    >  1:258940/1‑142 (MQ=255)                                                       aCCCTTTAAACTGATCCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGtagtag                                                                                <  1:87364/143‑1 (MQ=255)                                                         cATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAgcg                                                                              >  1:192139/1‑143 (MQ=255)                                                             tAAACCGAACCTGACGCGGTCGTACTACCCGAATGGTATCCAGCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTcg                                                                          <  2:642447/143‑1 (MQ=255)                                                                aCTGAACCTGACGTGGTCGTACTACCAGAAGGGTAGCCATCACCGCCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCgg                                                                       <  2:592890/143‑1 (MQ=255)                                                                 cTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGt                                                                      <  2:560867/143‑1 (MQ=255)                                                                             tGGTCGTACTACCAGAATGGTATCCAGCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTGACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGAc                                                          <  2:284814/143‑1 (MQ=255)                                                                                      tcgtaaccatacaagacgcagcccaaccggcggcgtggtcagcacggagccggtTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGt                                                 >  1:31071‑M2/55‑143 (MQ=255)                                                                                         cAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTaaa                                              >  1:462453/1‑143 (MQ=255)                                                                                            aaTGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTTGTCGCGCTCGCGCGTATCCCGTGGACCATGATAGTAAAAtg                                           >  2:620356/1‑142 (MQ=255)                                                                                                gTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTGGTAGCGCGCGCGGTTATCCCGTGGAGCATGATAGTAAAATTGaaa                                       >  1:23699/1‑143 (MQ=255)                                                                                                 tATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGAACCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTaaaa                                      >  1:81525/1‑143 (MQ=255)                                                                                                     acgcagcccaaccggcggcgtggtcagcacggagccggtTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACt                                  >  1:353414‑M2/40‑143 (MQ=255)                                                                                                            accaccGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGCTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCtctc                           <  2:225218/143‑1 (MQ=255)                                                                                                                ccggcggcgtggtcagcacggagccggtTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAACTTAAAATACTCGCTCtccccc                       >  2:254459‑M2/29‑142 (MQ=255)                                                                                                                   GCTCCGTGCTGCCCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTCACCAGcc                    >  2:390147‑M1/1‑143 (MQ=255)                                                                                                                       cGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCAGGTAGTAGCGCTCGCGGGTATCCCGTGGACCCTGCTAGTAAACTTTAAAATACTCGCGTTCACCAGCCTGCa                >  2:586658/1‑143 (MQ=255)                                                                                                                                    ccgccgGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTCACCAGCCTGCAACGCCAGCTGGCg   <  1:640380/143‑1 (MQ=255)                                                                                                                                     cgccgGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAACTGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGCCCATGCTAGTAAACTTTAAACTACTCGCTCTCACCACCCTGCACCACCCGCTCGccg  >  2:258072/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                        GCTTAAACCATGTGTTGCCAGTGTTACTTACCGTTCCTGTCACCTTGTCGAAGGACCATTTAAACTGAACCTGACGTGGTCGTACTACCAGAATGGTATCCATCACCACCACCGGCTCCGTGCTGACCACGCCGCCGGTTGGGCTGCGTCTTGTATGGTTACGAGTGGGGACCTCGCGAAATGAGACCCGGTAGTAGCGCTCGCGGTTATCCCGTGGACCATGATAGTAAAATTTAAAATACTCGCTCTCACCAGCCTGCAACGCCAGCTGGCGG  >  NC_000913/304674‑304948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.