| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729475 = | 24 (0.700) | 3 (0.100) | 3/244 | NT | 14.9% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA |
| ? | NC_000913 | = 4168363 | 12 (0.380) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
ATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGT > NC_000913/2729333‑2729616 | gttGAGGTCGTCGACTTGCACTCACAACCCCGCAGGTGGCGTCGCCGAGGGGATTCGAGCCCGTGTTCCCAGCGATAAAGGGCAGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGata < 2:405234/142‑1 (MQ=11)atcgAGGTCGGCGACTTTCACCCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGata < 1:547001/140‑1 (MQ=11) tgctcacagaggttgcctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataagcccgttcgcctgctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaatg > 2:665172‑M1/141‑142 (MQ=255) tgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaactatcacgcaccgcgtgataagcaAtt < 2:557536‑M1/3‑1 (MQ=255) tgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgagagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtt < 2:58168‑M1/3‑1 (MQ=255) tGAGGTCGGCGACTTTCACTCACAAACCGGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAtt < 2:278879/143‑1 (MQ=14) tgttggCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGTGATTCGAACCCCTGTTACCGCCGTGAAAGGGCTGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc < 2:250076/139‑1 (MQ=0) gcacagattgtctgagagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt > 1:646324‑M1/136‑143 (MQ=255) acacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaacgaaagctcaccctacacgaaaatatcacccaacgcgagacaagcaAGTTTCgt < 2:290564‑M1/8‑1 (MQ=255) aggtgACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtg > 2:340549/5‑143 (MQ=1) ccttGACAGGGCGCGGTCCTGCGCTTCTCGTCGAATGGCTCACGAAAATTGCTTATCCCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTTTTCAGCCTCACTCCCAAcgc < 2:655014/140‑1 (MQ=1) gccgttcgctttctattaatgaaagctcaacctacacaaaaatatcacgcaacgcgtgataagcaATTTTCGTGTCGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAAc < 1:529714‑M1/78‑1 (MQ=255) gtCCTCGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCTCGCGTTGCGTGATATTTTCGGCTATTGGGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 2:585729/143‑1 (MQ=11) cTGGGCCTCTAGACGAAGGGGACATGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc > 2:480702/1‑143 (MQ=17) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGACTTATTCTCTTCGGCCTCACTCCCAACGCCTACACGCCTTGCTAtacg > 2:525367/1‑140 (MQ=11) ctACACGAAGGGGTCACTGAAATTGCTCATCTCGCGTTGCGTGCTATTTTCGTGTAGGCTGACCTTTCATCAATAGCAAGCGTACGTCCTTATTCTCTTCCGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTGTtca < 2:57203/143‑1 (MQ=11) aGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 2:116857/1‑143 (MQ=35) aGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 2:234054/1‑143 (MQ=35) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 1:341523/143‑1 (MQ=38) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca > 2:38301/1‑143 (MQ=37) cGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGa < 2:541294/143‑1 (MQ=39) cGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGa < 2:341532/143‑1 (MQ=39) cGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGa < 2:79112/143‑1 (MQ=39) gggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTTTTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATc > 2:78173/1‑143 (MQ=37) ggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt > 1:193429/1‑143 (MQ=37) tacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGCAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCAAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg < 1:556107‑M1/110‑1 (MQ=255) acacGGAAATTGCTTATCACGCGTGGCGGGATATGTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCGTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt < 2:172208/143‑1 (MQ=11) cacGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCGACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtg < 2:456004/143‑1 (MQ=38) acgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 1:198651‑M1/113‑1 (MQ=255) aaaaTTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAg > 1:141671/1‑143 (MQ=38) aTTGCTTATCGCGCGTTGCGCGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCAc < 1:99412/143‑1 (MQ=255) tGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCACTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTg < 2:522876/143‑1 (MQ=38) aCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATGTGTTTGGGCACTGCAAAGTAc > 1:38763/1‑143 (MQ=255) gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc < 2:427353/143‑1 (MQ=255) tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCATTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGCGCACTGCACAGTACGcttct > 2:131030/1‑143 (MQ=255) tggtatTTTCTTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCCTAAACGCCTTGCTATTCACTTTTCATCAGACCATCTGTGAGATCACTGCAAAGTACGCTTCTTtaa < 2:408238/140‑1 (MQ=14) tGATAGTTTCGTGTAGGGTGAGCTTTCAGTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCAGCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaa < 1:570760/143‑1 (MQ=255) ggATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCGGCCTCACTCCCAACGCGTAAACGCGTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaa < 2:330322/142‑1 (MQ=255) tatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACCATCTGTGCGAGCACTGCAAGATCCCCTTCTTtaaggt > 1:286833/1‑143 (MQ=14) | ATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGT > NC_000913/2729333‑2729616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |