| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729475 = | 24 (0.700) | 3 (0.100) | 3/244 | NT | 14.9% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA |
| ? | NC_000913 | = 4168363 | 12 (0.380) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
TAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168221‑4168502 | tAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTAGTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCa > 1:562849/1‑143 (MQ=255) tGCTCACAGAGGTTGCCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGCCCGTTCGCCTGCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatg > 2:665172‑M2/1‑140 (MQ=255) tGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAACTATCACGCACCGCGTGATAAGCAatt < 2:557536‑M2/143‑4 (MQ=255) tGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGAGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatt < 2:58168‑M2/143‑4 (MQ=255) gcacagATTGTCTGAGAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt > 1:646324‑M2/2‑135 (MQ=255) acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAACGAAAGCTCACCCTACACGAAAATATCACCCAACGCGAGACAAGCAagtttcgt < 2:290564‑M2/143‑9 (MQ=255) gATGGTCTGAGAGAAAGTGAAAAGCAAGGCGTGTGCGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTccc < 2:536112/143‑1 (MQ=255) tGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCtt < 2:365400/143‑1 (MQ=38) tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTc > 1:7263/1‑143 (MQ=38) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag > 1:362052/1‑143 (MQ=35) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTATATTAATGAAAGCTCACCCTACACGAAAATAGCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag > 2:398440/1‑143 (MQ=25) gTGGAAAGCGAGGCGTTTAGGCGTTGGGAGGGAGGCTGAAGAGAAGAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGccc < 1:396898/143‑1 (MQ=11) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAGTTTCGTGTCCCCTTCGTCTAGAGGccc > 1:38041/1‑143 (MQ=17) gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATCTCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGACGCCCAg > 2:655804/1‑143 (MQ=17) aacgCCCTTCGCTCTCTACTGATGGCCGCTCAACCCACACGAAATTATCACGCAACGCGTGATAAGCAATGTTCGTGCCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAg < 2:1505/140‑1 (MQ=1) gCCGTTCGCTTTCTATTAATGAAAGCTCAACCTACACAAAAATATCACGCAACGCGTGATAAGCAattttcgtgtcgggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaac < 1:529714‑M2/143‑79 (MQ=255) gacaGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTtgtg < 1:596771/140‑1 (MQ=1) tACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagcaagcgaacggccttattctcttcagcctcactccaaacgcgtaaacgccttgctattcacttttcatcagacaatctg < 1:556107‑M2/143‑111 (MQ=255) acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatcagacaatctgtgt < 1:198651‑M2/143‑114 (MQ=255) atCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAata < 1:398735/143‑1 (MQ=2) cACGCAACGCGTGATAAGCAATTTCCGTGTCCCCGTCGTCGAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATAtc < 1:82889/143‑1 (MQ=11) aaCGAGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGCGGGAGCGGTCTCCACCCTATCACGGCGGTGACATGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCaaa < 1:280340/143‑1 (MQ=11) aGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGGAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCg > 2:498900/1‑143 (MQ=255) | TAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCG > NC_000913/4168221‑4168502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |