| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1463439 = | 235 (1.640) | 17 (0.130) | 5/262 | NT | 6.8% | intergenic (+1/‑100) | paaK/paaX | phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX |
| ? | NC_000913 | 1463490 = | 242 (1.780) | intergenic (+52/‑49) | paaK/paaX | phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX | |||||
CCACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1463594‑1463439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatacgACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCATC > NC_000913/1463490‑1463638 CCACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑C < 1:1510552/150‑1CCACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑C < 1:741746/150‑1CCACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑C > 1:2234093/1‑150 CACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGTCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑Ca > 2:2404670/1‑149 CACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CG > 2:462165/1‑150 ACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGA > 1:2175182/1‑150 TGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATA < 2:8628/150‑1 TGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATA < 2:366808/150‑1 cACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAa > 1:2112670/2‑149 aACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC > 1:30266/2‑150 GACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC < 1:704958/150‑1 GACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC > 1:33877/1‑150 GACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC > 2:1524809/1‑150 GACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC > 2:2240184/1‑150 GACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTCGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATAC > 2:732828/1‑150 ACCGGAACAGCGTTTACAGCATGTTGTATAAAAGTATCAAGTTTACTCATTCACTTCAGTCTGTTGTTATTGTTTTGATTTATTAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG < 2:1810413/150‑1 ACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG < 2:2161766/150‑1 ACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG > 1:893568/1‑150 ACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG < 2:2267647/150‑1 ACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG < 1:1053485/150‑1 TACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATA < 2:1818851/134‑1 TACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATA > 1:1818851/1‑134 AGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTC > 1:758137/1‑150 AGGTCCTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCGATGATTAATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATGCAACATGCTGTAAACGCTGTTC > 2:195699/1‑150 GTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTC > 1:1976132/1‑150 CTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTG > 1:1389973/1‑150 CTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCGGTAAACGCTGTTCAGGTCAGTG > 2:1025328/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 1:271472/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 2:1225121/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 2:1447789/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 2:2456235/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 1:678710/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 1:670365/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 1:522263/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCC > 1:1657496/1‑137 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCC < 2:1657496/137‑1 GGCCCTGGCGCTTTACCCCACCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTATATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACA > 1:1678381/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCT > 1:1030797/1‑150 GGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACGACCTGTGCTATGATTCATAAATAACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCT > 2:2044799/1‑150 gtctATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCT < 1:1965286/146‑1 CGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTT > 2:125609/1‑150 GATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTC > 1:1881137/1‑150 GATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTC > 1:2336303/1‑150 ATACGACCTGTGCTATGATTCATAAATCGCAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC > 2:14845/1‑150 ATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC < 2:987969/150‑1 ATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC < 1:1689302/150‑1 ATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC < 2:1972656/150‑1 ATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCC < 1:360641/150‑1 CGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCAa > 1:1314815/1‑149 CGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATCAGTAAACTTGATACTTATATCCAACATCATCTAAAAGCTGTTCCGGTCAGTGGCACATCTTTCATCTCCTCTCTGTATGGTGATTCGCTTACCAAT > 1:653804/1‑150 GACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCATC > 2:160916/1‑150 CCACTGACCGGAACAGCGTTTACAGCATGTTGGATAAAAGTATCAAGTTTACTCATTCGCTTCAGTCTGTTGTTATTGTTGTGATTTATGAATCATAGCACAGGTCGTATCGACTTCTGGCCCTGGCGCTTTACCCCACCAGGGCCAGA‑‑‑CGATACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1463594‑1463439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatacgACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTCGCTTTCCCATC > NC_000913/1463490‑1463638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |