mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 372 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 101 (0.710) | 3 (0.020) | 3/254 | NT | 3.0% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase CreC/putative inner membrane protein |
| ? | NC_000913 | = 4638170 | 99 (0.750) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase CreC/putative inner membrane protein | |||||
| * | ? | NC_000913 | 4635842 = | 155 (1.080) | 7 (0.050) | 6/264 | NT | 4.7% | coding (322/474 nt) | creA | PF05981 family protein CreA |
| ? | NC_000913 | 4635880 = | 138 (1.010) | coding (360/474 nt) | creA | PF05981 family protein CreA | |||||
| * | ? | NC_000913 | 4635837 = | 151 (1.060) | 4 (0.030) | 4/268 | NT | 2.7% | coding (317/474 nt) | creA | PF05981 family protein CreA |
| ? | NC_000913 | 4635885 = | 138 (0.990) | coding (365/474 nt) | creA | PF05981 family protein CreA | |||||
| * | ? | NC_000913 | = 4621838 | 143 (1.000) | 4 (0.030) | 4/260 | NT | 2.8% | coding (70/1332 nt) | yjjJ | toxin YjjJ |
| ? | NC_000913 | = 4621865 | 143 (1.060) | coding (97/1332 nt) | yjjJ | toxin YjjJ | |||||
| * | ? | NC_000913 | 4568311 = | 141 (0.990) | 4 (0.030) | 4/264 | NT | 3.3% | coding (209/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| ? | NC_000913 | 4568374 = | 100 (0.730) | coding (146/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||
| * | ? | NC_000913 | = 4562622 | 132 (0.920) | 3 (0.020) | 3/260 | NT | 2.3% | coding (54/1179 nt) | yjiJ | putative transporter YjiJ |
| ? | NC_000913 | = 4562653 | 129 (0.960) | coding (23/1179 nt) | yjiJ | putative transporter YjiJ | |||||
| * | ? | NC_000913 | 4543430 = | 147 (1.030) | 3 (0.020) | 3/258 | NT | 2.2% | coding (316/549 nt) | fimA | type 1 fimbriae major subunit |
| ? | NC_000913 | 4543484 = | 124 (0.930) | coding (370/549 nt) | fimA | type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4534130 = | 118 (0.820) | 4 (0.030) | 4/256 | NT | 3.4% | intergenic (‑77/+300) | topAI/yjhZ | KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ |
| ? | NC_000913 | 4534171 = | 120 (0.900) | intergenic (‑118/+259) | topAI/yjhZ | KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ | |||||
| * | ? | NC_000913 | 4531468 = | 138 (0.960) | 3 (0.020) | 3/266 | NT | 2.3% | coding (184/1122 nt) | sgcX | KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | 4531508 = | 117 (0.850) | coding (144/1122 nt) | sgcX | KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | = 4530145 | 136 (0.950) | 3 (0.020) | 3/264 | NT | 2.2% | coding (99/1314 nt) | sgcC | putative PTS enzyme IIC component SgcC |
| ? | NC_000913 | = 4530173 | 142 (1.040) | coding (71/1314 nt) | sgcC | putative PTS enzyme IIC component SgcC | |||||