breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	4,139	G→A	8.8%	D136N (GAT→AAT) ‡	thrC →	threonine synthase
RA	4,140	A→T	8.9%	D136V (GAT→GTT) ‡	thrC →	threonine synthase
RA	4,141	T→C	9.1%	D136D (GAT→GAC) ‡	thrC →	threonine synthase
RA	10,619	G→T	5.0%	intergenic (‑125/+24)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	10,620	A→T	5.0%	intergenic (‑126/+23)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	10,621	A→T	5.0%	intergenic (‑127/+22)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	10,622	A→C	5.1%	intergenic (‑128/+21)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	11,127	C→G	8.6%	S77T (AGT→ACT)  L100V (CTA→GTA)	yaaW ← mbiA →	putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA
RA	11,136	C→A	5.7%	G74V (GGT→GTT)  P103T (CCA→ACA)	yaaW ← mbiA →	putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA
RA	13,583	T→G	7.6%	V474G (GTT→GGT)	dnaK →	chaperone protein DnaK
RA	13,586	C→A	7.9%	T475N (ACC→AAC)	dnaK →	chaperone protein DnaK
RA	14,116	A→G	6.9%	intergenic (+37/‑52)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,119	G→A	6.8%	intergenic (+40/‑49)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,124	T→A	6.5%	intergenic (+45/‑44)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,129	T→C	6.9%	intergenic (+50/‑39)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	14,132	C→T	6.7%	intergenic (+53/‑36)	dnaK → / → dnaJ	chaperone protein DnaK/chaperone protein DnaJ
RA	16,923	T→G	5.7%	K13T (AAG→ACG)	mokC ←	regulatory protein MokC
RA	16,926	C→A	6.3%	R12L (CGT→CTT)	mokC ←	regulatory protein MokC
RA	17,527	G→C	5.4%	S13S (TCG→TCC)	nhaA →	Na(+):H(+) antiporter NhaA
RA	17,528	G→C	5.4%	G14R (GGA→CGA)	nhaA →	Na(+):H(+) antiporter NhaA
RA	18,678	A→G	6.3%	intergenic (+23/‑37)	nhaA → / → nhaR	Na(+):H(+) antiporter NhaA/DNA‑binding transcriptional activator NhaR
RA	18,680	A→T	7.0%	intergenic (+25/‑35)	nhaA → / → nhaR	Na(+):H(+) antiporter NhaA/DNA‑binding transcriptional activator NhaR
RA	18,681	A→T	6.4%	intergenic (+26/‑34)	nhaA → / → nhaR	Na(+):H(+) antiporter NhaA/DNA‑binding transcriptional activator NhaR
RA	18,683	C→T	6.0%	intergenic (+28/‑32)	nhaA → / → nhaR	Na(+):H(+) antiporter NhaA/DNA‑binding transcriptional activator NhaR
RA	51,907	T→G	6.5%	E175A (GAA→GCA) ‡	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	51,908	C→G	5.7%	E175Q (GAA→CAA) ‡	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	51,909	C→A	7.0%	L174L (CTG→CTT)	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	59,297	T→G	5.0%	intergenic (+18/+390)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,301	A→C	5.1%	intergenic (+22/+386)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,625	G→A	9.7%	intergenic (+346/+62)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,626	A→G	9.7%	intergenic (+347/+61)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,627	C→T	8.9%	intergenic (+348/+60)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,628	T→C	9.6%	intergenic (+349/+59)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	63,070	G→A	7.3%	D65D (GAC→GAT) ‡	rapA ←	RNA polymerase‑binding ATPase and RNAP recycling factor
RA	63,072	C→G	7.3%	D65H (GAC→CAC) ‡	rapA ←	RNA polymerase‑binding ATPase and RNAP recycling factor
RA	63,074	T→C	7.1%	H64R (CAT→CGT)	rapA ←	RNA polymerase‑binding ATPase and RNAP recycling factor
RA	78,830	T→A	10.0%	intergenic (+31/+18)	setA → / ← leuD	sugar exporter SetA/3‑isopropylmalate dehydratase subunit LeuD
RA	78,831	T→A	10.0%	intergenic (+32/+17)	setA → / ← leuD	sugar exporter SetA/3‑isopropylmalate dehydratase subunit LeuD
RA	83,587	A→C	9.2%	intergenic (‑58/+35)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	83,590	G→T	9.0%	intergenic (‑61/+32)	leuA ← / ← leuL	2‑isopropylmalate synthase/leu operon leader peptide
RA	87,881	A→G	6.8%	intergenic (+33/‑147)	ilvH → / → cra	acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit/DNA‑binding transcriptional dual regulator Cra
RA	87,884	T→A	6.6%	intergenic (+36/‑144)	ilvH → / → cra	acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit/DNA‑binding transcriptional dual regulator Cra
RA	87,887	C→T	6.5%	intergenic (+39/‑141)	ilvH → / → cra	acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit/DNA‑binding transcriptional dual regulator Cra
RA	92,965	T→C	5.8%	V518A (GTT→GCT) ‡	ftsI →	peptidoglycan DD‑transpeptidase FtsI
RA	92,966	T→A	5.8%	V518V (GTT→GTA) ‡	ftsI →	peptidoglycan DD‑transpeptidase FtsI
RA	92,967	G→A	7.3%	A519T (GCG→ACG)	ftsI →	peptidoglycan DD‑transpeptidase FtsI
RA	103,611	A→T	5.6%	S153C (AGC→TGC)	ftsQ →	cell division protein FtsQ
RA	103,614	A→T	6.2%	K154* (AAG→TAG) ‡	ftsQ →	cell division protein FtsQ
RA	103,615	A→T	6.2%	K154M (AAG→ATG) ‡	ftsQ →	cell division protein FtsQ
RA	103,618	A→T	6.7%	Q155L (CAG→CTG)	ftsQ →	cell division protein FtsQ
RA	105,046	A→C	5.2%	Q355H (CAA→CAC)	ftsA →	cell division protein FtsA
RA	105,047	G→T	5.3%	V356L (GTG→TTG)	ftsA →	cell division protein FtsA
RA	111,013	G→A	5.9%	intergenic (+29/‑31)	secA → / → mutT	protein translocation ATPase/8‑oxo‑dGTP diphosphatase
RA	111,016	T→C	6.0%	intergenic (+32/‑28)	secA → / → mutT	protein translocation ATPase/8‑oxo‑dGTP diphosphatase
RA	111,571	G→T	5.1%	intergenic (+138/+78)	mutT → / ← yacG	8‑oxo‑dGTP diphosphatase/DNA gyrase inhibitor YacG
RA	111,572	C→T	5.2%	intergenic (+139/+77)	mutT → / ← yacG	8‑oxo‑dGTP diphosphatase/DNA gyrase inhibitor YacG
RA	120,154	Δ1 bp	9.0%	intergenic (+19/+24)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	120,158:1	+A	10.1%	intergenic (+23/+20)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	120,999	T→C	5.5%	T185A (ACC→GCC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,000	C→G	5.5%	A184A (GCG→GCC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,004	T→C	5.5%	Q183R (CAG→CGG)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,007	G→A	5.6%	P182L (CCG→CTG)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,011	C→G	6.2%	G181R (GGC→CGC)	aroP ←	aromatic amino acid:H(+) symporter AroP
RA	121,012	G→A	5.8%	G180G (GGC→GGT)	aroP ←	aromatic amino acid:H(+) symporter AroP
JC JC	122,012	IS1 (+) +9 bp	7.9%	intergenic (‑461/‑72)	aroP ← / → pdhR	aromatic amino acid:H(+) symporter AroP/DNA‑binding transcriptional dual regulator PdhR
RA	124,241	C→T	100%	Q409* (CAG→TAG)	aceE →	pyruvate dehydrogenase E1 component
RA	124,866	A→C	5.0%	D617A (GAC→GCC)	aceE →	pyruvate dehydrogenase E1 component
RA	125,226	G→T	8.6%	R737L (CGT→CTT)	aceE →	pyruvate dehydrogenase E1 component
RA	125,232	T→G	6.6%	V739G (GTC→GGC) ‡	aceE →	pyruvate dehydrogenase E1 component
RA	125,233	C→A	7.5%	V739V (GTC→GTA) ‡	aceE →	pyruvate dehydrogenase E1 component
RA	125,817	A→G	5.7%	K41K (AAA→AAG)	aceF →	pyruvate dehydrogenase, E2 subunit
RA	126,405	A→G	5.3%	S237S (TCA→TCG)	aceF →	pyruvate dehydrogenase, E2 subunit
RA	127,603	C→G	5.7%	intergenic (+16/‑309)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,604	A→T	5.5%	intergenic (+17/‑308)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,605	A→T	5.3%	intergenic (+18/‑307)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,606	C→G	5.6%	intergenic (+19/‑306)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	136,530	C→T	7.0%	intergenic (‑66/+40)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,532	G→C	7.1%	intergenic (‑68/+38)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,535	G→C	6.9%	intergenic (‑71/+35)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	136,537	A→G	6.9%	intergenic (‑73/+33)	speE ← / ← yacC	spermidine synthase/putative lipoprotein YacC
RA	137,018	G→C	5.9%	intergenic (‑101/‑65)	yacC ← / → cueO	putative lipoprotein YacC/cuprous oxidase/multicopper oxidase with role in copper homeostasis
RA	137,020	A→T	6.1%	intergenic (‑103/‑63)	yacC ← / → cueO	putative lipoprotein YacC/cuprous oxidase/multicopper oxidase with role in copper homeostasis
RA	137,022	G→C	6.4%	intergenic (‑105/‑61)	yacC ← / → cueO	putative lipoprotein YacC/cuprous oxidase/multicopper oxidase with role in copper homeostasis
RA	143,533	T→C	8.5%	L252P (CTG→CCG) ‡	yadG →	putative ABC transporter ATP‑binding protein YadG
RA	143,534	G→A	9.0%	L252L (CTG→CTA) ‡	yadG →	putative ABC transporter ATP‑binding protein YadG
RA	146,291	G→C	5.5%	S404T (AGT→ACT)	yadE →	putative polysaccharide deacetylase lipoprotein
RA	146,733	G→A	5.7%	intergenic (‑39/‑235)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,734	A→T	5.9%	intergenic (‑40/‑234)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,735	T→C	6.1%	intergenic (‑41/‑233)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	151,519	A→C	5.9%	I27M (ATT→ATG)	yadK ←	putative fimbrial protein YadK
RA	151,522	G→T	6.1%	A26A (GCC→GCA)	yadK ←	putative fimbrial protein YadK
RA	153,928	G→A	5.0%	S500L (TCA→TTA)	htrE ←	putative fimbrial usher protein HtrE
RA	153,935	T→C	5.0%	N498D (AAT→GAT)	htrE ←	putative fimbrial usher protein HtrE
RA	165,038	T→G	6.3%	P103P (CCT→CCG)	mrcB →	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
RA	165,039	G→C	6.2%	A104P (GCG→CCG) ‡	mrcB →	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
RA	165,040	C→A	6.3%	A104E (GCG→GAG) ‡	mrcB →	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB
RA	167,917	A→C	12.3%	Q145P (CAG→CCG) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,918	G→C	12.3%	Q145H (CAG→CAC) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,919	G→T	13.3%	G146C (GGC→TGC)	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	175,144	Δ1 bp	7.4%	coding (38/1422 nt)	clcA →	chloride:H(+) antiporter ClcA
RA	175,149:1	+G	7.6%	coding (43/1422 nt)	clcA →	chloride:H(+) antiporter ClcA
RA	175,486	T→A	10.4%	V127E (GTA→GAA)	clcA →	chloride:H(+) antiporter ClcA
RA	176,977	A→G	9.0%	intergenic (+23/+24)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,978	A→T	9.5%	intergenic (+24/+23)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,979	C→T	9.4%	intergenic (+25/+22)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	182,659	C→T	5.9%	A66V (GCG→GTG)	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,661	G→C	5.9%	V67L (GTA→CTA)	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,664	G→C	5.8%	A68P (GCA→CCA) ‡	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,666	A→G	5.7%	A68A (GCA→GCG) ‡	cdaR →	DNA‑binding transcriptional activator CdaR
RA	191,892	T→A	21.7%	L13Q (CTG→CAG)	pyrH →	UMP kinase
RA	192,085	C→A	9.5%	D77E (GAC→GAA)	pyrH →	UMP kinase
RA	199,150	G→A	5.4%	S408N (AGC→AAC)	bamA →	outer membrane protein assembly factor BamA
RA	202,259	C→A	7.8%	G53G (GGC→GGA)	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,260	C→A	7.3%	H54N (CAT→AAT)	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,263	T→G	7.1%	F55V (TTC→GTC) ‡	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	202,264	T→G	7.1%	F55C (TTC→TGC) ‡	fabZ →	3‑hydroxy‑acyl‑[acyl‑carrier‑protein] dehydratase
RA	203,391	A→G	6.3%	E15G (GAA→GGA) ‡	lpxB →	lipid A disaccharide synthase
RA	203,392	A→T	6.3%	E15D (GAA→GAT) ‡	lpxB →	lipid A disaccharide synthase
RA	203,393	A→T	6.3%	T16S (ACC→TCC) ‡	lpxB →	lipid A disaccharide synthase
RA	203,394	C→T	6.3%	T16I (ACC→ATC) ‡	lpxB →	lipid A disaccharide synthase
RA	207,483	A→C	7.4%	V786V (GTA→GTC)	dnaE →	DNA polymerase III subunit alpha
RA	207,486	G→T	7.6%	M787I (ATG→ATT)	dnaE →	DNA polymerase III subunit alpha
RA	209,604	T→C	5.6%	intergenic (+24/‑75)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,608	T→C	5.5%	intergenic (+28/‑71)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,609	T→G	5.5%	intergenic (+29/‑70)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,610	C→A	5.5%	intergenic (+30/‑69)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,611	G→A	5.7%	intergenic (+31/‑68)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,615	G→A	5.6%	intergenic (+35/‑64)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	217,030	C→T	6.0%	intergenic (‑27/+27)	yaeF ← / ← proS	peptidase C92 family protein/proline‑‑tRNA ligase
RA	217,037	A→T	7.6%	intergenic (‑34/+20)	yaeF ← / ← proS	peptidase C92 family protein/proline‑‑tRNA ligase
RA	217,044	A→G	7.7%	intergenic (‑41/+13)	yaeF ← / ← proS	peptidase C92 family protein/proline‑‑tRNA ligase
RA	231,007	C→A	6.1%	intergenic (‑126/‑115)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	231,008	T→G	6.0%	intergenic (‑127/‑114)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	240,840	T→G	8.3%	intergenic (+24/+19)	ivy → / ← fadE	periplasmic chaperone, inhibitor of vertebrate C‑type lysozyme/acyl‑CoA dehydrogenase
RA	240,841	T→A	8.3%	intergenic (+25/+18)	ivy → / ← fadE	periplasmic chaperone, inhibitor of vertebrate C‑type lysozyme/acyl‑CoA dehydrogenase
RA	240,842	T→A	8.3%	intergenic (+26/+17)	ivy → / ← fadE	periplasmic chaperone, inhibitor of vertebrate C‑type lysozyme/acyl‑CoA dehydrogenase
RA	240,843	C→A	8.2%	intergenic (+27/+16)	ivy → / ← fadE	periplasmic chaperone, inhibitor of vertebrate C‑type lysozyme/acyl‑CoA dehydrogenase
RA	245,783	A→T	5.6%	L8H (CTT→CAT) ‡	yafK ←	L,D‑transpeptidase domain‑containing protein YafK
RA	245,784	G→T	5.9%	L8I (CTT→ATT) ‡	yafK ←	L,D‑transpeptidase domain‑containing protein YafK
RA	245,789	A→C	5.7%	L6* (TTA→TGA) ‡	yafK ←	L,D‑transpeptidase domain‑containing protein YafK
RA	245,790	A→T	5.7%	L6I (TTA→ATA) ‡	yafK ←	L,D‑transpeptidase domain‑containing protein YafK
RA	254,223	A→T	5.4%	intergenic (+21/+36)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,228	A→T	5.4%	intergenic (+26/+31)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,233	A→T	5.6%	intergenic (+31/+26)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	254,238	A→T	5.4%	intergenic (+36/+21)	prfH → / ← pepD	putative peptide chain release factor/peptidase D
RA	263,351	T→A	5.5%	S107C (AGC→TGC)	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	263,352	T→A	5.8%	Q106H (CAA→CAT) ‡	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	263,353	T→A	5.8%	Q106L (CAA→CTA) ‡	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	265,578	C→T	5.0%	intergenic (‑35/+42)	ykfF ← / ← ykfB	CP4‑6 prophage; protein YkfF/CP4‑6 prophage; protein YkfB
RA	282,513	T→C	5.3%	L79P (CTG→CCG)	yagE →	CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase
RA	282,518	G→A	5.2%	G81S (GGC→AGC)	yagE →	CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase
RA	292,302	C→G	8.7%	intergenic (+71/+20)	yagJ → / ← yagK	CP4‑6 prophage; protein YagJ/CP4‑6 prophage; uncharacterized protein YagK
RA	299,377	A→T	5.4%	Y520N (TAC→AAC)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	299,378	A→T	5.5%	V519V (GTT→GTA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,689	G→T	7.4%	T82T (ACC→ACA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,692	A→C	7.8%	I81M (ATT→ATG)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,695	G→T	7.3%	V80V (GTC→GTA)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	300,698	A→C	7.8%	A79A (GCT→GCG)	paoC ←	aldehyde dehydrogenase: molybdenum cofactor‑binding subunit
RA	302,225	T→A	7.0%	N117Y (AAT→TAT)	paoA ←	aldehyde dehydrogenase, Fe‑S subunit
RA	302,227	A→T	6.9%	L116H (CTT→CAT)	paoA ←	aldehyde dehydrogenase, Fe‑S subunit
RA	304,083	G→T	6.6%	P34T (CCC→ACC)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,085	A→C	6.6%	I33S (ATT→AGT)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,088	G→T	6.0%	T32N (ACT→AAT)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,090	A→C	6.6%	G31G (GGT→GGG)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	312,303	T→G	5.7%	V64V (GTT→GTG)	ykgL →	uncharacterized protein YkgL
RA	312,304	A→T	5.4%	I65L (ATA→TTA) ‡	ykgL →	uncharacterized protein YkgL
RA	312,306	A→T	5.7%	I65I (ATA→ATT) ‡	ykgL →	uncharacterized protein YkgL
RA	312,308	A→T	5.6%	N66I (AAC→ATC)	ykgL →	uncharacterized protein YkgL
RA	317,566	G→A	8.7%	intergenic (‑430/+160)	ykgA ← / ← rclC	putative DNA‑binding transcriptional regulator YkgA/reactive chlorine species resistance protein C
RA	317,571	T→C	8.5%	intergenic (‑435/+155)	ykgA ← / ← rclC	putative DNA‑binding transcriptional regulator YkgA/reactive chlorine species resistance protein C
RA	318,649	T→C	8.4%	intergenic (‑82/+27)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,651	T→A	8.6%	intergenic (‑84/+25)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,652	T→A	8.5%	intergenic (‑85/+24)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	318,654	G→A	8.4%	intergenic (‑87/+22)	rclB ← / ← rclA	DUF1471 domain‑containing protein RclB/putative pyridine nucleotide‑disulfide oxidoreductase RclA
RA	324,575	T→C	10.1%	intergenic (+122/+121)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,579	A→G	10.0%	intergenic (+126/+117)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,580	C→G	10.0%	intergenic (+127/+116)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,581	C→T	10.0%	intergenic (+128/+115)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,585	G→A	9.9%	intergenic (+132/+111)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,874	T→G	5.4%	N164T (AAC→ACC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,875	T→A	5.4%	N164Y (AAC→TAC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,876	C→A	6.0%	R163S (AGG→AGT)	ykgH ←	uncharacterized protein YkgH
RA	327,213	G→C	5.9%	S12* (TCA→TGA)	betA ←	choline dehydrogenase
RA	328,375	A→C	8.7%	I120S (ATC→AGC)	betB ←	betaine aldehyde dehydrogenase
RA	328,377	C→G	8.7%	L119L (CTG→CTC) ‡	betB ←	betaine aldehyde dehydrogenase
RA	328,379	G→T	8.8%	L119M (CTG→ATG) ‡	betB ←	betaine aldehyde dehydrogenase
RA	329,523	T→A	5.2%	S21T (TCC→ACC)	betT →	choline:H(+) symporter
RA	335,166	T→A	7.7%	intergenic (‑144/‑114)	yahC ← / → yahD	uncharacterized protein YahC/ankyrin repeat‑containing protein YahD
RA	344,704	A→T	5.8%	K177* (AAA→TAA) ‡	yahL →	uncharacterized protein YahL
RA	344,705	A→T	6.2%	K177I (AAA→ATA) ‡	yahL →	uncharacterized protein YahL
RA	347,693	C→A	9.6%	G251C (GGC→TGC)	prpR ←	DNA‑binding transcriptional dual regulator PrpR
RA	347,698	C→A	8.7%	G249V (GGG→GTG)	prpR ←	DNA‑binding transcriptional dual regulator PrpR
RA	349,760	A→G	5.0%	intergenic (+188/‑252)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	349,761	A→C	5.1%	intergenic (+189/‑251)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	349,767	A→T	5.1%	intergenic (+195/‑245)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	349,768	T→A	5.0%	intergenic (+196/‑244)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	349,769	A→T	6.1%	intergenic (+197/‑243)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	349,776	C→T	6.0%	intergenic (+204/‑236)	prpB → / → prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
RA	357,156	T→A	6.6%	L329Q (CTG→CAG)	codA →	cytosine/isoguanine deaminase
RA	357,160	A→C	5.7%	Q330H (CAA→CAC)	codA →	cytosine/isoguanine deaminase
RA	357,161	G→T	5.6%	V331L (GTG→TTG)	codA →	cytosine/isoguanine deaminase
RA	357,165	T→A	5.8%	L332Q (CTG→CAG)	codA →	cytosine/isoguanine deaminase
RA	357,698	G→T	9.7%	intergenic (+244/+93)	codA → / ← cynR	cytosine/isoguanine deaminase/DNA‑binding transcriptional dual regulator CynR
RA	357,778	C→T	5.8%	intergenic (+324/+13)	codA → / ← cynR	cytosine/isoguanine deaminase/DNA‑binding transcriptional dual regulator CynR
RA	361,220	A→C	6.0%	intergenic (+74/+29)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,223	G→T	6.1%	intergenic (+77/+26)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,224	C→G	6.6%	intergenic (+78/+25)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,225	A→C	6.1%	intergenic (+79/+24)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,228	G→T	6.3%	intergenic (+82/+21)	cynX → / ← lacA	cyanate transporter/galactoside O‑acetyltransferase
RA	361,895	A→C	5.2%	intergenic (‑35/+31)	lacA ← / ← lacY	galactoside O‑acetyltransferase/lactose permease
RA	361,901	T→G	5.3%	intergenic (‑41/+25)	lacA ← / ← lacY	galactoside O‑acetyltransferase/lactose permease
RA	361,909	C→T	5.2%	intergenic (‑49/+17)	lacA ← / ← lacY	galactoside O‑acetyltransferase/lactose permease
RA	361,968	G→C	6.2%	G404G (GGC→GGG)	lacY ←	lactose permease
RA	361,971	G→C	6.2%	P403P (CCC→CCG)	lacY ←	lactose permease
RA	361,974	G→C	6.2%	G402G (GGC→GGG)	lacY ←	lactose permease
RA	374,682	C→T	6.7%	P272L (CCG→CTG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,683	G→C	7.0%	P272P (CCG→CCC) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,688	G→C	5.5%	R274P (CGA→CCA) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,689	A→G	5.5%	R274R (CGA→CGG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	377,836	G→C	7.9%	P178R (CCG→CGG)	frmB ←	S‑formylglutathione hydrolase FrmB
RA	385,724	T→A	6.4%	W165R (TGG→AGG)	tauA →	taurine ABC transporter periplasmic binding protein
RA	394,472	G→A	5.1%	intergenic (+54/‑34)	yaiT → / → iprA	putative autotransporter YaiT/putative DNA‑binding transcriptional regulator IprA
RA	394,473	G→T	5.5%	intergenic (+55/‑33)	yaiT → / → iprA	putative autotransporter YaiT/putative DNA‑binding transcriptional regulator IprA
RA	394,474	A→C	5.1%	intergenic (+56/‑32)	yaiT → / → iprA	putative autotransporter YaiT/putative DNA‑binding transcriptional regulator IprA
RA	394,475	T→C	5.2%	intergenic (+57/‑31)	yaiT → / → iprA	putative autotransporter YaiT/putative DNA‑binding transcriptional regulator IprA
RA	394,632	G→A	6.0%	D43N (GAT→AAT) ‡	iprA →	putative DNA‑binding transcriptional regulator IprA
RA	394,633	A→G	6.1%	D43G (GAT→GGT) ‡	iprA →	putative DNA‑binding transcriptional regulator IprA
RA	394,636	C→T	5.9%	T44I (ACT→ATT) ‡	iprA →	putative DNA‑binding transcriptional regulator IprA
RA	394,637	T→C	6.1%	T44T (ACT→ACC) ‡	iprA →	putative DNA‑binding transcriptional regulator IprA
RA	399,801	A→G	6.0%	Q70R (CAA→CGA)	yaiZ →	DUF2754 domain‑containing protein YaiZ
RA	399,806	G→T	6.0%	intergenic (+1/+23)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,808	A→T	6.1%	intergenic (+3/+21)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,810	A→C	6.0%	intergenic (+5/+19)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	399,815	C→T	5.9%	intergenic (+10/+14)	yaiZ → / ← ddlA	DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A
RA	403,178	T→C	7.5%	intergenic (+16/‑103)	phoA → / → psiF	alkaline phosphatase/PsiF family protein
RA	403,182	T→A	7.5%	intergenic (+20/‑99)	phoA → / → psiF	alkaline phosphatase/PsiF family protein
RA	403,183	T→A	7.4%	intergenic (+21/‑98)	phoA → / → psiF	alkaline phosphatase/PsiF family protein
RA	403,187	G→A	7.7%	intergenic (+25/‑94)	phoA → / → psiF	alkaline phosphatase/PsiF family protein
RA	404,113	A→C	7.4%	A137A (GCA→GCC)	dgcC →	diguanylate cyclase DgcC
RA	404,115	G→C	7.5%	G138A (GGC→GCC)	dgcC →	diguanylate cyclase DgcC
RA	404,117	G→T	7.5%	G139C (GGC→TGC)	dgcC →	diguanylate cyclase DgcC
RA	420,941	T→A	10.7%	intergenic (+31/‑45)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,942	G→T	10.2%	intergenic (+32/‑44)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,945	A→C	10.6%	intergenic (+35/‑41)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,946	T→A	10.6%	intergenic (+36/‑40)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	422,537	T→G	7.9%	L7R (CTG→CGG)	malZ →	maltodextrin glucosidase
RA	422,540	C→A	7.8%	P8Q (CCG→CAG)	malZ →	maltodextrin glucosidase
RA	423,989	A→C	5.7%	N491T (AAC→ACC) ‡	malZ →	maltodextrin glucosidase
RA	423,990	C→G	5.8%	N491K (AAC→AAG) ‡	malZ →	maltodextrin glucosidase
RA	423,995	C→G	5.9%	P493R (CCG→CGG) ‡	malZ →	maltodextrin glucosidase
RA	423,996	G→T	5.6%	P493P (CCG→CCT) ‡	malZ →	maltodextrin glucosidase
RA	431,107	A→T	7.2%	intergenic (+155/+22)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,109	A→T	7.2%	intergenic (+157/+20)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,111	A→T	7.0%	intergenic (+159/+18)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	443,022	G→A	6.3%	intergenic (+25/+29)	thiI → / ← yajL	tRNA uridine 4‑sulfurtransferase/protein/nucleic acid deglycase 3
RA	443,023	T→C	6.4%	intergenic (+26/+28)	thiI → / ← yajL	tRNA uridine 4‑sulfurtransferase/protein/nucleic acid deglycase 3
RA	446,786	C→T	5.8%	intergenic (‑120/+29)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,787	G→A	5.8%	intergenic (‑121/+28)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,788	T→C	5.7%	intergenic (‑122/+27)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	446,789	A→G	5.6%	intergenic (‑123/+26)	yajR ← / ← cyoE	putative major facilitator superfamily transport protein YajR/heme O synthase
RA	454,853	T→C	7.0%	intergenic (+64/‑280)	bolA → / → tig	DNA‑binding transcriptional dual regulator BolA/trigger factor
RA	454,856	G→A	7.4%	intergenic (+67/‑277)	bolA → / → tig	DNA‑binding transcriptional dual regulator BolA/trigger factor
RA	458,738	G→A	5.8%	intergenic (+38/‑150)	clpX → / → lon	ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease
RA	458,742	T→A	5.3%	intergenic (+42/‑146)	clpX → / → lon	ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease
RA	458,743	T→A	5.3%	intergenic (+43/‑145)	clpX → / → lon	ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease
RA	458,744	T→A	5.2%	intergenic (+44/‑144)	clpX → / → lon	ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease
RA	464,354	C→A	9.1%	intergenic (+46/‑48)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	464,356	A→T	8.6%	intergenic (+48/‑46)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	464,358	T→G	9.4%	intergenic (+50/‑44)	ybaV → / → fadM	helix‑hairpin‑helix 3 family protein/thioesterase III
RA	475,971	C→G	8.0%	intergenic (+20/+11)	ybaY → / ← atl	PF09619 family lipoprotein YbaY/DNA base‑flipping protein
RA	475,972	C→G	8.4%	intergenic (+21/+10)	ybaY → / ← atl	PF09619 family lipoprotein YbaY/DNA base‑flipping protein
RA	478,750	C→T	7.3%	intergenic (‑133/+31)	pdeB ← / ← ylaC	c‑di‑GMP phosphodiesterase PdeB/putative inner membrane protein
RA	478,752	G→A	7.3%	intergenic (‑135/+29)	pdeB ← / ← ylaC	c‑di‑GMP phosphodiesterase PdeB/putative inner membrane protein
RA	478,757	T→C	7.1%	intergenic (‑140/+24)	pdeB ← / ← ylaC	c‑di‑GMP phosphodiesterase PdeB/putative inner membrane protein
RA	478,759	A→G	7.2%	intergenic (‑142/+22)	pdeB ← / ← ylaC	c‑di‑GMP phosphodiesterase PdeB/putative inner membrane protein
RA	481,225	T→G	7.8%	intergenic (‑517/+29)	tomB ← / ← acrB	protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB
RA	481,228	C→A	7.8%	intergenic (‑520/+26)	tomB ← / ← acrB	protein that modulates Hha toxicity/multidrug efflux pump RND permease AcrB
RA	494,032	A→T	8.2%	intergenic (+9/‑44)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	494,033	C→G	8.3%	intergenic (+10/‑43)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	494,034	A→T	8.2%	intergenic (+11/‑42)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	495,015	A→G	5.9%	intergenic (+5/‑105)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,026	A→T	8.1%	intergenic (+16/‑94)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,027	T→G	8.6%	intergenic (+17/‑93)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,028	C→A	8.5%	intergenic (+18/‑92)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,029	A→T	8.3%	intergenic (+19/‑91)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	495,040	C→T	7.7%	intergenic (+30/‑80)	recR → / → htpG	DNA repair protein RecR/chaperone protein HtpG
RA	512,212	T→G	5.4%	V191G (GTG→GGG)	glsA →	glutaminase 1
RA	531,581	A→G	6.7%	L214S (TTG→TCG)	allS ←	DNA‑binding transcriptional activator AllS
RA	531,584	C→T	6.8%	R213Q (CGA→CAA)	allS ←	DNA‑binding transcriptional activator AllS
RA	533,846	T→C	5.5%	intergenic (+20/‑70)	allR → / → gcl	DNA‑binding transcriptional repressor AllR/glyoxylate carboligase
RA	533,849	G→A	5.4%	intergenic (+23/‑67)	allR → / → gcl	DNA‑binding transcriptional repressor AllR/glyoxylate carboligase
RA	556,018	G→A	8.6%	intergenic (+22/+14)	cysS → / ← ybcI	cysteine‑‑tRNA ligase/conserved inner membrane protein YbcI
RA	556,019	T→A	8.5%	intergenic (+23/+13)	cysS → / ← ybcI	cysteine‑‑tRNA ligase/conserved inner membrane protein YbcI
RA	556,020	T→A	8.5%	intergenic (+24/+12)	cysS → / ← ybcI	cysteine‑‑tRNA ligase/conserved inner membrane protein YbcI
RA	556,021	T→C	8.5%	intergenic (+25/+11)	cysS → / ← ybcI	cysteine‑‑tRNA ligase/conserved inner membrane protein YbcI
RA	556,642	A→C	5.1%	intergenic (‑89/+19)	ybcI ← / ← ybcJ	conserved inner membrane protein YbcI/putative RNA‑binding protein YbcJ
RA	585,863	T→C	5.9%	intergenic (‑230/+284)	ompT ← / ← envY	outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY
RA	585,866	G→A	5.5%	intergenic (‑233/+281)	ompT ← / ← envY	outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY
RA	594,946	C→A	12.0%	Q166H (CAG→CAT) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,948	G→C	11.7%	Q166E (CAG→GAG) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,950	T→G	11.2%	H165P (CAT→CCT)	cusR ←	DNA‑binding transcriptional activator CusR
RA	595,519	T→A	8.8%	intergenic (‑76/‑81)	cusR ← / → cusC	DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel
RA	595,520	T→A	8.8%	intergenic (‑77/‑80)	cusR ← / → cusC	DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel
RA	596,807	T→G	7.0%	I403S (ATT→AGT)	cusC →	copper/silver export system outer membrane channel
RA	596,810	C→A	6.9%	T404N (ACT→AAT)	cusC →	copper/silver export system outer membrane channel
RA	603,391	C→G	6.3%	intergenic (+56/+25)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	603,393	T→A	7.2%	intergenic (+58/+23)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	603,395	C→G	6.2%	intergenic (+60/+21)	pheP → / ← ybdG	phenylalanine:H(+) symporter PheP/miniconductance mechanosensitive channel YbdG
RA	604,752	G→T	5.2%	intergenic (‑89/+19)	ybdG ← / ← nfsB	miniconductance mechanosensitive channel YbdG/NAD(P)H nitroreductase NfsB
RA	604,753	A→C	5.7%	intergenic (‑90/+18)	ybdG ← / ← nfsB	miniconductance mechanosensitive channel YbdG/NAD(P)H nitroreductase NfsB
RA	610,192	A→G	5.1%	intergenic (‑113/+62)	entD ← / ← fepA	phosphopantetheinyl transferase EntD/ferric enterobactin outer membrane transporter
RA	613,549	T→G	5.1%	R271R (CGT→CGG)	fes →	enterochelin esterase
RA	613,551	C→A	6.3%	A272D (GCC→GAC)	fes →	enterochelin esterase
RA	632,070	T→G	6.8%	intergenic (+71/‑112)	cstA → / → ybdD	carbon starvation protein A/conserved protein YbdD
RA	632,075	G→A	6.4%	intergenic (+76/‑107)	cstA → / → ybdD	carbon starvation protein A/conserved protein YbdD
RA	632,076	G→C	6.4%	intergenic (+77/‑106)	cstA → / → ybdD	carbon starvation protein A/conserved protein YbdD
RA	632,077	T→C	6.5%	intergenic (+78/‑105)	cstA → / → ybdD	carbon starvation protein A/conserved protein YbdD
RA	632,082	C→A	6.3%	intergenic (+83/‑100)	cstA → / → ybdD	carbon starvation protein A/conserved protein YbdD
RA	641,355	G→A	7.1%	intergenic (+37/+84)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	641,358	G→T	7.1%	intergenic (+40/+81)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	641,360	C→T	6.5%	intergenic (+42/+79)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	641,361	A→G	6.4%	intergenic (+43/+78)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	641,363	A→C	6.5%	intergenic (+45/+76)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	641,366	T→C	6.3%	intergenic (+48/+73)	ahpF → / ← uspG	alkyl hydroperoxide reductase, AhpF component/universal stress protein G
RA	644,030	A→G	11.4%	intergenic (‑63/+167)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,034	T→C	11.6%	intergenic (‑67/+163)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,036	A→T	11.6%	intergenic (‑69/+161)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,038	G→A	11.7%	intergenic (‑71/+159)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	644,042	C→T	11.8%	intergenic (‑75/+155)	rnk ← / ← rna	nucleoside diphosphate kinase regulator/RNase I
RA	645,069	G→A	6.6%	intergenic (‑66/+48)	rna ← / ← citT	RNase I/citrate:succinate antiporter
RA	645,070	G→A	6.6%	intergenic (‑67/+47)	rna ← / ← citT	RNase I/citrate:succinate antiporter
RA	645,073	T→C	6.7%	intergenic (‑70/+44)	rna ← / ← citT	RNase I/citrate:succinate antiporter
RA	645,074	T→C	6.7%	intergenic (‑71/+43)	rna ← / ← citT	RNase I/citrate:succinate antiporter
RA	654,560	A→C	8.5%	intergenic (+18/+23)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	654,563	C→G	8.0%	intergenic (+21/+20)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	654,566	G→T	7.1%	intergenic (+24/+17)	dpiA → / ← dcuC	DNA‑binding transcriptional dual regulator DpiA/anaerobic C4‑dicarboxylate transporter DcuC
RA	657,531	T→G	11.1%	intergenic (+30/+24)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,533	A→T	10.8%	intergenic (+32/+22)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,535	C→A	10.7%	intergenic (+34/+20)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	659,204	C→T	8.6%	intergenic (+54/+47)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,205	A→T	9.3%	intergenic (+55/+46)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,206	A→T	8.4%	intergenic (+56/+45)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	659,207	A→G	8.7%	intergenic (+57/+44)	tatE → / ← lipA	twin arginine protein translocation system ‑ TatE protein/lipoyl synthase
RA	660,180	A→G	6.4%	Y13H (TAC→CAC)	lipA ←	lipoyl synthase
RA	660,183	T→A	6.0%	K12* (AAA→TAA)	lipA ←	lipoyl synthase
RA	660,186	C→T	5.9%	V11I (GTT→ATT)	lipA ←	lipoyl synthase
RA	662,683	A→T	9.6%	intergenic (‑41/+69)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,684	G→T	9.5%	intergenic (‑42/+68)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,685	A→C	10.0%	intergenic (‑43/+67)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,686	A→T	10.0%	intergenic (‑44/+66)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	672,242	T→G	7.8%	I848L (ATT→CTT)	leuS ←	leucine‑‑tRNA ligase
RA	672,243	C→T	8.0%	V847V (GTG→GTA) ‡	leuS ←	leucine‑‑tRNA ligase
RA	672,244	A→G	8.0%	V847A (GTG→GCG) ‡	leuS ←	leucine‑‑tRNA ligase
RA	672,245	C→A	8.6%	V847L (GTG→TTG) ‡	leuS ←	leucine‑‑tRNA ligase
RA	681,694	A→G	6.1%	intergenic (+31/+29)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,699	T→A	6.4%	intergenic (+36/+24)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,700	T→A	6.4%	intergenic (+37/+23)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	681,705	C→T	6.3%	intergenic (+42/+18)	djlC → / ← hscC	co‑chaperone DjlC/chaperone protein HscC
RA	691,390	G→C	7.8%	A132G (GCC→GGC)	ybeX ←	CorC‑HlyC family protein YbeX
RA	696,325	G→T	6.4%	intergenic (+49/+105)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	696,328	A→C	6.2%	intergenic (+52/+102)	ubiF → / ← glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
RA	699,432	G→A	5.3%	intergenic (‑255/+142)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,433	C→A	6.1%	intergenic (‑256/+141)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,439	G→T	5.2%	intergenic (‑262/+135)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,440	A→C	5.2%	intergenic (‑263/+134)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,446	T→G	5.3%	intergenic (‑269/+128)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,447	T→C	5.3%	intergenic (‑270/+127)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,556	C→T	5.2%	intergenic (‑379/+18)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	699,559	A→G	5.2%	intergenic (‑382/+15)	asnB ← / ← umpH	asparagine synthetase B/UMP phosphatase
RA	710,170	C→T	10.9%	intergenic (+54/+30)	chiQ → / ← fur	lipoprotein ChiQ/DNA‑binding transcriptional dual regulator Fur
RA	710,173	A→G	10.8%	intergenic (+57/+27)	chiQ → / ← fur	lipoprotein ChiQ/DNA‑binding transcriptional dual regulator Fur
RA	715,762	G→A	5.4%	K117K (AAG→AAA)	ybfP →	lipoprotein YbfP
RA	721,004	T→A	5.1%	intergenic (+164/+52)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,006	T→A	5.2%	intergenic (+166/+50)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,009	T→A	5.3%	intergenic (+169/+47)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	721,011	T→A	5.2%	intergenic (+171/+45)	ybfK → / ← kdpE	uncharacterized protein YbfK/DNA‑binding transcriptional activator KdpE
RA	729,376	G→T	9.2%	intergenic (+36/‑207)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,377	A→T	9.3%	intergenic (+37/‑206)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,378	A→T	9.7%	intergenic (+38/‑205)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,379	A→C	9.7%	intergenic (+39/‑204)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	736,372	C→T	5.3%	intergenic (+153/‑73)	ybfC → / → ybfQ	uncharacterized protein YbfC/inactive transposase YbfQ
RA	741,034	A→G	5.0%	intergenic (+109/+41)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	741,041	G→T	5.7%	intergenic (+116/+34)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	741,043	C→G	5.8%	intergenic (+118/+32)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	741,045	A→C	6.0%	intergenic (+120/+30)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	741,051	G→T	6.0%	intergenic (+126/+24)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	741,052	C→T	5.7%	intergenic (+127/+23)	phr → / ← dtpD	deoxyribodipyrimidine photolyase (photoreactivation)/dipeptide:H(+) symporter DtpD
RA	744,544	C→G	6.6%	T101R (ACG→AGG) ‡	pxpC →	5‑oxoprolinase component C
RA	744,545	G→C	6.6%	T101T (ACG→ACC) ‡	pxpC →	5‑oxoprolinase component C
RA	744,546	C→G	6.5%	L102V (CTT→GTT)	pxpC →	5‑oxoprolinase component C
RA	749,644	C→A	5.0%	V22L (GTG→TTG)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,645	C→T	5.1%	A21A (GCG→GCA)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,648	A→T	5.1%	A20A (GCT→GCA)	ybgP ←	putative fimbrial chaperone YbgP
RA	749,651	A→G	5.1%	N19N (AAT→AAC)	ybgP ←	putative fimbrial chaperone YbgP
RA	751,117	T→C	7.1%	P351P (CCA→CCG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,120	C→G	7.2%	Q350H (CAG→CAC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,122	G→C	7.0%	Q350E (CAG→GAG) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,124	C→G	6.7%	G349A (GGT→GCT)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	751,127	G→A	7.1%	A348V (GCG→GTG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,065	G→C	8.0%	D35E (GAC→GAG) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,066	T→G	8.1%	D35A (GAC→GCC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,067	C→A	8.0%	D35Y (GAC→TAC) ‡	ybgQ ←	putative fimbrial usher protein YbgQ
RA	752,068	G→C	8.0%	R34R (CGC→CGG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	753,634	T→A	10.4%	I279F (ATC→TTC)	gltA ←	citrate synthase
RA	753,944	C→A	5.3%	M175I (ATG→ATT)	gltA ←	citrate synthase
RA	754,446	A→G	26.0%	L8P (CTC→CCC)	gltA ←	citrate synthase
RA	760,485	G→A	91.3%	G594S (GGC→AGC)	sucA →	subunit of E1(0) component of 2‑oxoglutarate dehydrogenase
RA	762,862	A→G	5.9%	intergenic (+123/‑152)	sucB → / → sucC	dihydrolipoyltranssuccinylase/succinyl‑CoA synthetase subunit beta
RA	762,863	A→C	5.8%	intergenic (+124/‑151)	sucB → / → sucC	dihydrolipoyltranssuccinylase/succinyl‑CoA synthetase subunit beta
RA	762,869	A→T	5.6%	intergenic (+130/‑145)	sucB → / → sucC	dihydrolipoyltranssuccinylase/succinyl‑CoA synthetase subunit beta
RA	762,870	A→T	5.6%	intergenic (+131/‑144)	sucB → / → sucC	dihydrolipoyltranssuccinylase/succinyl‑CoA synthetase subunit beta
RA	774,623	A→T	5.0%	intergenic (+21/‑129)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,635	T→G	5.5%	intergenic (+33/‑117)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,636	C→A	5.5%	intergenic (+34/‑116)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,637	C→G	5.0%	intergenic (+35/‑115)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	788,385	G→T	9.4%	T151T (ACC→ACA) ‡	galM ←	galactose‑1‑epimerase
RA	788,387	T→A	7.6%	T151S (ACC→TCC) ‡	galM ←	galactose‑1‑epimerase
RA	788,389	A→C	8.1%	L150R (CTG→CGG)	galM ←	galactose‑1‑epimerase
RA	794,938	C→A	8.6%	intergenic (+16/‑151)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	794,939	T→C	8.6%	intergenic (+17/‑150)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	794,942	G→A	8.6%	intergenic (+20/‑147)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	794,943	T→G	8.8%	intergenic (+21/‑146)	acrZ → / → modA	multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein
RA	805,312	G→T	5.5%	E604* (GAG→TAG) ‡	ybhJ →	putative hydratase YbhJ
RA	805,313	A→C	5.3%	E604A (GAG→GCG) ‡	ybhJ →	putative hydratase YbhJ
RA	824,572	T→A	7.6%	intergenic (‑75/‑58)	ybhP ← / → ybhQ	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP/putative inner membrane protein
RA	824,573	T→A	7.8%	intergenic (‑76/‑57)	ybhP ← / → ybhQ	endonuclease/exonuclease/phosphatase domain‑containing protein YbhP/putative inner membrane protein
RA	830,666	A→T	8.9%	intergenic (‑23/‑206)	cecR ← / → rhlE	DNA‑binding transcriptional dual regulator CecR/ATP‑dependent RNA helicase RhlE
RA	830,667	T→C	9.0%	intergenic (‑24/‑205)	cecR ← / → rhlE	DNA‑binding transcriptional dual regulator CecR/ATP‑dependent RNA helicase RhlE
RA	830,668	G→A	9.0%	intergenic (‑25/‑204)	cecR ← / → rhlE	DNA‑binding transcriptional dual regulator CecR/ATP‑dependent RNA helicase RhlE
RA	830,669	A→T	9.0%	intergenic (‑26/‑203)	cecR ← / → rhlE	DNA‑binding transcriptional dual regulator CecR/ATP‑dependent RNA helicase RhlE
RA	832,252	T→A	5.7%	intergenic (+16/+216)	rhlE → / ← ybiA	ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA
RA	832,253	A→T	5.6%	intergenic (+17/+215)	rhlE → / ← ybiA	ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA
RA	832,254	T→A	5.7%	intergenic (+18/+214)	rhlE → / ← ybiA	ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA
RA	845,575	G→A	5.0%	intergenic (‑95/+166)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	845,576	G→C	5.1%	intergenic (‑96/+165)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	845,577	G→C	5.1%	intergenic (‑97/+164)	ybiO ← / ← glnQ	moderate conductance mechanosensitive channel/L‑glutamine ABC transporter ATP binding subunit
RA	846,969	C→A	8.4%	A51S (GCC→TCC)	glnP ←	L‑glutamine ABC transporter membrane subunit
RA	846,972	T→G	7.5%	I50L (ATA→CTA)	glnP ←	L‑glutamine ABC transporter membrane subunit
RA	850,993	T→C	10.4%	intergenic (+28/+21)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,995	T→G	10.2%	intergenic (+30/+19)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,996	C→A	9.9%	intergenic (+31/+18)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,998	G→A	10.5%	intergenic (+33/+16)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	854,790	T→C	7.3%	intergenic (+25/+34)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,792	A→C	7.2%	intergenic (+27/+32)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,793	T→A	7.1%	intergenic (+28/+31)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,794	G→T	7.2%	intergenic (+29/+30)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	854,796	G→A	7.4%	intergenic (+31/+28)	ybiR → / ← ldtB	putative transporter YbiR/L,D‑transpeptidase YbiS
RA	858,664	G→T	5.0%	S133* (TCA→TAA)	ybiU ←	DUF1479 domain‑containing protein YbiU
RA	861,538	C→G	5.3%	G357R (GGT→CGT)	ybiW ←	putative pyruvate formate lyase
RA	869,378	T→G	5.2%	F620C (TTC→TGC) ‡	gsiA →	glutathione ABC transporter ATP binding subunit GsiA
RA	869,379	C→A	5.2%	F620L (TTC→TTA) ‡	gsiA →	glutathione ABC transporter ATP binding subunit GsiA
RA	886,189	A→G	5.5%	V384A (GTC→GCC)	ybjJ ←	inner membrane protein YbjJ
RA	886,191	A→T	5.5%	I383I (ATT→ATA)	ybjJ ←	inner membrane protein YbjJ
RA	886,194	A→T	5.5%	A382A (GCT→GCA) ‡	ybjJ ←	inner membrane protein YbjJ
RA	886,196	C→T	5.5%	A382T (GCT→ACT) ‡	ybjJ ←	inner membrane protein YbjJ
RA	887,393	T→A	5.0%	intergenic (‑54/‑30)	ybjJ ← / → rcdA	inner membrane protein YbjJ/DNA‑binding transcriptional regulator RcdA
RA	892,025	A→C	5.5%	E20A (GAA→GCA)	rimK →	ribosomal protein S6 modification protein
RA	892,455	G→C	7.1%	V163V (GTG→GTC)	rimK →	ribosomal protein S6 modification protein
RA	892,457	T→A	7.1%	I164N (ATT→AAT)	rimK →	ribosomal protein S6 modification protein
RA	892,459	G→C	7.2%	D165H (GAC→CAC)	rimK →	ribosomal protein S6 modification protein
RA	897,968:1	+A	7.5%	intergenic (+39/‑21)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	897,973	Δ1 bp	7.4%	intergenic (+44/‑16)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	899,656	T→C	6.5%	intergenic (+11/+188)	rlmC → / ← artJ	23S rRNA m(5)U747 methyltransferase/L‑arginine ABC transporter periplasmic binding protein
RA	899,657	G→A	6.5%	intergenic (+12/+187)	rlmC → / ← artJ	23S rRNA m(5)U747 methyltransferase/L‑arginine ABC transporter periplasmic binding protein
RA	907,069	A→C	6.0%	L405R (CTT→CGT)	ybjT ←	putative NAD(P)‑dependent oxidoreductase YbjT
RA	922,314:1	+C	7.5%	intergenic (+21/+52)	macB → / ← cspD	ABC‑type tripartite efflux pump ATP binding/membrane subunit/DNA replication inhibitor
RA	925,574	T→C	6.7%	intergenic (+34/+310)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	925,578	G→T	6.8%	intergenic (+38/+306)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	925,579	A→T	7.3%	intergenic (+39/+305)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	925,580	A→T	6.9%	intergenic (+40/+304)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	925,581	A→C	6.6%	intergenic (+41/+303)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	925,585	G→A	6.9%	intergenic (+45/+299)	clpA → / ← serW	ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
RA	926,168	C→T	6.2%	intergenic (‑197/+57)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	926,174	A→T	6.2%	intergenic (‑203/+51)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	926,180	A→G	6.3%	intergenic (‑209/+45)	serW ← / ← infA	tRNA‑Ser/translation initiation factor IF‑1
RA	928,453	T→A	5.1%	Q248L (CAA→CTA)	cydC ←	glutathione/L‑cysteine ABC exporter subunit CydC
RA	933,155	T→C	5.1%	intergenic (+66/‑69)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,156	G→A	5.3%	intergenic (+67/‑68)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,162	A→C	5.7%	intergenic (+73/‑62)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,165	T→C	5.9%	intergenic (+76/‑59)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	933,166	G→A	6.0%	intergenic (+77/‑58)	lrp → / → ftsK	DNA‑binding transcriptional dual regulator Lrp/cell division DNA translocase FtsK
RA	934,195	T→A	6.2%	A324A (GCT→GCA)	ftsK →	cell division DNA translocase FtsK
RA	950,313	C→T	6.3%	intergenic (+55/+27)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,314	A→T	6.3%	intergenic (+56/+26)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,317	A→T	6.3%	intergenic (+59/+23)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,318	A→G	6.5%	intergenic (+60/+22)	ycaK → / ← pflA	putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme
RA	950,646	A→G	5.9%	V145V (GTT→GTC) ‡	pflA ←	pyruvate formate‑lyase activating enzyme
RA	950,647	A→T	5.9%	V145D (GTT→GAT) ‡	pflA ←	pyruvate formate‑lyase activating enzyme
RA	950,648	C→T	5.8%	V145I (GTT→ATT) ‡	pflA ←	pyruvate formate‑lyase activating enzyme
RA	953,720	A→T	5.1%	N249K (AAT→AAA)	focA ←	formate channel FocA
RA	958,769	C→G	7.8%	intergenic (+28/‑43)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,771	A→T	7.2%	intergenic (+30/‑41)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,773	C→G	7.2%	intergenic (+32/‑39)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	963,761	T→C	10.6%	intergenic (+93/‑67)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor subunit beta
RA	963,762	A→G	10.8%	intergenic (+94/‑66)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor subunit beta
RA	963,763	C→T	10.7%	intergenic (+95/‑65)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor subunit beta
RA	963,764	G→A	10.8%	intergenic (+96/‑64)	rpsA → / → ihfB	30S ribosomal subunit protein S1/integration host factor subunit beta
RA	975,700	G→T	5.3%	D27Y (GAC→TAC) ‡	mukE →	chromosome partitioning protein MukE
RA	975,701	A→C	5.2%	D27A (GAC→GCC) ‡	mukE →	chromosome partitioning protein MukE
RA	985,855	A→T	5.2%	intergenic (‑146/+39)	aspC ← / ← ompF	aspartate aminotransferase/outer membrane porin F
RA	987,560	G→C	9.7%	intergenic (‑578/+25)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,561	G→C	10.0%	intergenic (‑579/+24)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	989,134	C→T	5.4%	intergenic (‑149/+20)	asnS ← / ← pncB	asparagine‑‑tRNA ligase/nicotinate phosphoribosyltransferase
RA	989,135	G→A	5.3%	intergenic (‑150/+19)	asnS ← / ← pncB	asparagine‑‑tRNA ligase/nicotinate phosphoribosyltransferase
RA	989,138	T→C	5.3%	intergenic (‑153/+16)	asnS ← / ← pncB	asparagine‑‑tRNA ligase/nicotinate phosphoribosyltransferase
RA	989,139	A→G	5.3%	intergenic (‑154/+15)	asnS ← / ← pncB	asparagine‑‑tRNA ligase/nicotinate phosphoribosyltransferase
RA	993,254	A→G	6.3%	intergenic (+20/+23)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,255	A→C	6.3%	intergenic (+21/+22)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,258	G→T	6.6%	intergenic (+24/+19)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,259	C→T	6.7%	intergenic (+25/+18)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	1,004,741	T→G	7.0%	intergenic (+84/‑27)	ycbF → / → pyrD	putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2
RA	1,004,746	C→A	7.6%	intergenic (+89/‑22)	ycbF → / → pyrD	putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2
RA	1,011,926	G→A	5.8%	intergenic (+55/‑75)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,930	T→C	5.5%	intergenic (+59/‑71)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,931	G→C	5.7%	intergenic (+60/‑70)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,932	G→A	5.7%	intergenic (+61/‑69)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,936	T→C	5.8%	intergenic (+65/‑65)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,015,912	T→A	6.5%	intergenic (+30/+40)	rmf → / ← fabA	ribosome modulation factor/beta‑hydroxyacyl‑acyl carrier protein dehydratase/isomerase
RA	1,021,688	C→T	8.1%	P184L (CCG→CTG)	sxy →	transcriptional coactivator for CRP
RA	1,021,691	T→C	8.0%	V185A (GTG→GCG)	sxy →	transcriptional coactivator for CRP
RA	1,021,695	A→G	8.7%	A186A (GCA→GCG)	sxy →	transcriptional coactivator for CRP
RA	1,021,696	C→T	8.4%	R187C (CGC→TGC)	sxy →	transcriptional coactivator for CRP
RA	1,021,700	G→A	8.5%	R188H (CGC→CAC)	sxy →	transcriptional coactivator for CRP
RA	1,021,703	A→G	8.3%	Q189R (CAG→CGG)	sxy →	transcriptional coactivator for CRP
RA	1,026,538	G→A	7.3%	intergenic (+13/+19)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,539	T→A	7.4%	intergenic (+14/+18)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,540	T→A	7.3%	intergenic (+15/+17)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,026,541	T→C	7.4%	intergenic (+16/+16)	helD → / ← mgsA	DNA helicase IV/methylglyoxal synthase
RA	1,036,228	T→A	5.0%	L153L (CTT→CTA)	hyaD →	putative hydrogenase 1 maturation protease HyaD
RA	1,070,873	A→G	5.7%	V28A (GTC→GCC)	rutE ←	putative malonic semialdehyde reductase
RA	1,070,878	T→A	6.0%	T26T (ACA→ACT) ‡	rutE ←	putative malonic semialdehyde reductase
RA	1,070,880	T→A	5.7%	T26S (ACA→TCA) ‡	rutE ←	putative malonic semialdehyde reductase
RA	1,070,882	T→A	5.9%	E25V (GAG→GTG)	rutE ←	putative malonic semialdehyde reductase
RA	1,070,887	C→T	5.8%	W23* (TGG→TGA)	rutE ←	putative malonic semialdehyde reductase
RA	1,072,360	T→A	5.3%	E168D (GAA→GAT)	rutB ←	peroxyureidoacrylate/ureidoacrylate amidohydrolase
RA	1,074,945	T→G	5.6%	N1313T (AAC→ACC)	putA ←	fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA
RA	1,074,948	C→A	5.4%	G1312V (GGT→GTT)	putA ←	fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA
RA	1,075,515	G→T	8.0%	A1123E (GCG→GAG)	putA ←	fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA
RA	1,075,518	A→C	7.7%	L1122R (CTC→CGC)	putA ←	fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA
RA	1,097,158	C→A	15.8%	intergenic (+329/+407)	ycdU → / ← serX	uncharacterized protein YcdU/tRNA‑Ser
RA	1,100,789	G→T	9.6%	intergenic (+2/+62)	ycdZ → / ← csgG	putative inner membrane protein/curli secretion channel
RA	1,100,791	G→C	9.5%	intergenic (+4/+60)	ycdZ → / ← csgG	putative inner membrane protein/curli secretion channel
RA	1,100,793	A→C	9.8%	intergenic (+6/+58)	ycdZ → / ← csgG	putative inner membrane protein/curli secretion channel
RA	1,101,556	T→G	5.8%	P43P (CCA→CCC)	csgG ←	curli secretion channel
RA	1,104,931	G→T	5.8%	intergenic (+29/‑30)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,932	C→T	6.0%	intergenic (+30/‑29)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,933	A→G	6.0%	intergenic (+31/‑28)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,934	A→C	6.0%	intergenic (+32/‑27)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,107,468	A→G	7.5%	T372A (ACC→GCC) ‡	clsC →	cardiolipin synthase C
RA	1,107,469	C→G	7.5%	T372S (ACC→AGC) ‡	clsC →	cardiolipin synthase C
RA	1,107,470	C→T	7.5%	T372T (ACC→ACT) ‡	clsC →	cardiolipin synthase C
RA	1,113,544	G→A	5.8%	intergenic (+138/‑35)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,113,548	T→C	5.1%	intergenic (+142/‑31)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,122,136	T→G	5.0%	I158L (ATA→CTA)	pyrC ←	dihydroorotase
RA	1,127,799	C→A	6.2%	intergenic (+70/‑40)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,127,800	T→A	6.3%	intergenic (+71/‑39)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,127,801	T→G	5.6%	intergenic (+72/‑38)	yceM → / → murJ	putative oxidoreductase YceM/putative lipid II flippase MurJ
RA	1,129,394	G→C	8.9%	intergenic (+20/+20)	murJ → / ← flgN	putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN
RA	1,131,199	G→C	8.2%	S61T (AGT→ACT) ‡	flgB →	flagellar basal‑body rod protein FlgB
RA	1,131,200	T→A	8.1%	S61R (AGT→AGA) ‡	flgB →	flagellar basal‑body rod protein FlgB
RA	1,131,201	G→C	8.3%	V62L (GTG→CTG)	flgB →	flagellar basal‑body rod protein FlgB
RA	1,131,310	A→T	7.6%	N98I (AAT→ATT)	flgB →	flagellar basal‑body rod protein FlgB
RA	1,134,661	A→G	5.3%	intergenic (+104/‑68)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,662	A→C	5.4%	intergenic (+105/‑67)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,668	T→A	5.4%	intergenic (+111/‑61)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,134,669	T→A	5.4%	intergenic (+112/‑60)	flgF → / → flgG	flagellar basal‑body rod protein FlgF/flagellar basal‑body rod protein FlgG
RA	1,145,946	T→A	5.6%	intergenic (+47/+65)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,947	T→A	5.6%	intergenic (+48/+64)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,953	G→T	5.8%	intergenic (+54/+58)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,145,954	C→T	5.7%	intergenic (+55/+57)	rluC → / ← yceF	23S rRNA pseudouridine(955/2504/2580) synthase/m(7)GTP pyrophosphatase
RA	1,147,690	G→A	6.4%	A24T (GCA→ACA) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,691	C→T	5.8%	A24V (GCA→GTA) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,692	A→G	5.8%	A24A (GCA→GCG) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,693	T→C	5.7%	L25L (TTG→CTG)	plsX →	putative phosphate acyltransferase
RA	1,147,980	G→T	5.4%	K120N (AAG→AAT)	plsX →	putative phosphate acyltransferase
RA	1,147,986	G→C	5.9%	L122L (CTG→CTC)	plsX →	putative phosphate acyltransferase
RA	1,147,987	G→C	6.0%	E123Q (GAG→CAG)	plsX →	putative phosphate acyltransferase
RA	1,147,993	A→C	6.1%	I125L (ATT→CTT)	plsX →	putative phosphate acyltransferase
RA	1,149,985	A→C	8.1%	A86A (GCA→GCC)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,149,988	G→C	9.0%	M87I (ATG→ATC)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,149,991	G→T	8.8%	M88I (ATG→ATT)	fabD →	[acyl‑carrier‑protein] S‑malonyltransferase
RA	1,153,208	T→C	5.6%	intergenic (+28/‑92)	fabF → / → pabC	beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase
RA	1,153,213	T→A	5.5%	intergenic (+33/‑87)	fabF → / → pabC	beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase
RA	1,153,214	T→A	5.5%	intergenic (+34/‑86)	fabF → / → pabC	beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase
RA	1,153,219	G→A	5.6%	intergenic (+39/‑81)	fabF → / → pabC	beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase
RA	1,157,629	G→C	5.8%	intergenic (+55/‑240)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,632	A→T	6.0%	intergenic (+58/‑237)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,633	A→T	5.5%	intergenic (+59/‑236)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,157,636	G→C	5.9%	intergenic (+62/‑233)	ycfH → / → ptsG	putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component
RA	1,158,139	A→T	8.6%	K91* (AAA→TAA) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,140	A→T	7.7%	K91I (AAA→ATA) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,513	C→A	6.5%	N215K (AAC→AAA)	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,515	T→G	6.3%	V216G (GTA→GGA) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,516	A→T	6.7%	V216V (GTA→GTT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,517	C→A	6.0%	P217T (CCT→ACT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,519	T→G	6.4%	P217P (CCT→CCG) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,159,335	G→T	8.4%	intergenic (+33/+27)	ptsG → / ← fhuE	glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter
RA	1,159,336	A→C	8.3%	intergenic (+34/+26)	ptsG → / ← fhuE	glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter
RA	1,167,410	T→A	5.5%	intergenic (+21/‑189)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,167,414	A→G	5.3%	intergenic (+25/‑185)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,167,416	A→T	5.2%	intergenic (+27/‑183)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,167,417	A→T	5.4%	intergenic (+28/‑182)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,167,419	C→T	5.2%	intergenic (+30/‑180)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,167,423	T→A	5.2%	intergenic (+34/‑176)	ndh → / → ycfJ	NADH:quinone oxidoreductase II/PF05433 family protein YcfJ
RA	1,174,077	G→A	8.4%	intergenic (‑113/+15)	mfd ← / ← ycfT	transcription‑repair coupling factor/inner membrane protein YcfT
RA	1,174,080	T→C	8.3%	intergenic (‑116/+12)	mfd ← / ← ycfT	transcription‑repair coupling factor/inner membrane protein YcfT
RA	1,181,760	A→G	6.1%	intergenic (‑35/+23)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,761	A→G	6.1%	intergenic (‑36/+22)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,764	C→T	6.4%	intergenic (‑39/+19)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,181,765	C→T	6.3%	intergenic (‑40/+18)	ymfA ← / ← potD	putative inner membrane protein/spermidine preferential ABC transporter periplasmic binding protein
RA	1,187,090	G→C	8.6%	intergenic (+20/+29)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,187,091	T→A	8.6%	intergenic (+21/+28)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,187,092	G→C	8.6%	intergenic (+22/+27)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,194,645:1	+A	7.6%	coding (307/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,650	G→A	8.2%	P101L (CCG→CTG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,653	T→C	8.1%	Q100R (CAG→CGG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,657	Δ1 bp	8.1%	coding (295/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,196,408	A→T	7.1%	intergenic (+35/+459)	icd → / ← ymfD	isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,196,803	A→C	6.9%	intergenic (+430/+64)	icd → / ← ymfD	isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,196,804	G→T	6.4%	intergenic (+431/+63)	icd → / ← ymfD	isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase
RA	1,200,910	T→A	6.4%	Q41H (CAA→CAT)	xisE ←	e14 prophage; putative excisionase
RA	1,200,913	T→A	6.1%	K40N (AAA→AAT) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,914	T→A	7.1%	K40I (AAA→ATA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,915	T→A	6.4%	K40* (AAA→TAA) ‡	xisE ←	e14 prophage; putative excisionase
RA	1,200,918	T→A	6.0%	M39L (ATG→TTG)	xisE ←	e14 prophage; putative excisionase
RA	1,202,957	G→T	7.0%	intergenic (‑24/‑67)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,202,959	T→A	5.9%	intergenic (‑26/‑65)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,202,961	A→C	6.2%	intergenic (‑28/‑63)	ymfK ← / → ymfT	e14 prophage; putative repressor protein YmfK/e14 prophage; putative DNA‑binding transcriptional regulator YmfT
RA	1,211,610	A→G	5.2%	intergenic (+33/+70)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,612	A→T	5.2%	intergenic (+35/+68)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,614	C→T	5.1%	intergenic (+37/+66)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,217,116	T→G	5.2%	intergenic (+120/‑212)	ymgC → / → pdeG	protein YmgC/putative c‑di‑GMP phosphodiesterase PdeG
RA	1,223,929	T→C	5.3%	intergenic (+22/+350)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,223,930	T→G	5.7%	intergenic (+23/+349)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,223,931	C→A	5.4%	intergenic (+24/+348)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,223,932	G→A	5.4%	intergenic (+25/+347)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,224,239	A→T	6.1%	intergenic (+332/+40)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,224,242	A→T	6.2%	intergenic (+335/+37)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,226,832	T→G	7.2%	F78C (TTT→TGT)	ycgJ →	PF05666 family protein YcgJ
RA	1,226,835	C→A	7.1%	T79K (ACA→AAA)	ycgJ →	PF05666 family protein YcgJ
RA	1,227,051	G→C	6.3%	intergenic (+83/+20)	ycgJ → / ← pliG	PF05666 family protein YcgJ/inhibitor of g‑type lysozyme
RA	1,227,052	A→T	6.3%	intergenic (+84/+19)	ycgJ → / ← pliG	PF05666 family protein YcgJ/inhibitor of g‑type lysozyme
RA	1,227,053	G→C	6.3%	intergenic (+85/+18)	ycgJ → / ← pliG	PF05666 family protein YcgJ/inhibitor of g‑type lysozyme
RA	1,231,956:1	+G	5.1%	coding (771/1269 nt)	umuC →	DNA polymerase V catalytic protein
RA	1,231,963	T→A	6.6%	Y260N (TAT→AAT)	umuC →	DNA polymerase V catalytic protein
RA	1,231,970	Δ1 bp	6.5%	coding (785/1269 nt)	umuC →	DNA polymerase V catalytic protein
RA	1,232,481	C→T	5.1%	intergenic (+27/+19)	umuC → / ← dsbB	DNA polymerase V catalytic protein/protein thiol:quinone oxidoreductase DsbB
RA	1,235,686	A→G	7.7%	intergenic (+29/+23)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,687	A→T	7.6%	intergenic (+30/+22)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,688	A→T	7.7%	intergenic (+31/+21)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,689	C→T	7.7%	intergenic (+32/+20)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,250,962	T→C	5.4%	intergenic (‑124/‑104)	dhaK ← / → dhaR	dihydroxyacetone kinase subunit K/DNA‑binding transcriptional dual regulator DhaR
RA	1,250,963	A→T	5.5%	intergenic (‑125/‑103)	dhaK ← / → dhaR	dihydroxyacetone kinase subunit K/DNA‑binding transcriptional dual regulator DhaR
RA	1,253,830	C→G	7.8%	S708T (AGT→ACT)	ycgV ←	putative autotransporter adhesin YcgV
RA	1,272,538	A→T	5.4%	D11V (GAT→GTT)	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,541	G→T	5.3%	C12F (TGT→TTT) ‡	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,542	T→A	5.3%	C12* (TGT→TGA) ‡	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,543	A→C	5.2%	K13Q (AAA→CAA)	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,272,546	A→T	5.8%	T14S (ACG→TCG)	chaC →	glutathione‑specific gamma‑glutamylcyclotransferase
RA	1,273,229	A→T	5.6%	intergenic (+27/+17)	chaC → / ← ychN	glutathione‑specific gamma‑glutamylcyclotransferase/DsrE/F sulfur relay family protein YchN
RA	1,285,190	T→A	6.4%	L18I (TTA→ATA)	narJ →	nitrate reductase 1 molybdenum cofactor assembly chaperone
RA	1,285,193	T→A	6.3%	W19R (TGG→AGG)	narJ →	nitrate reductase 1 molybdenum cofactor assembly chaperone
RA	1,286,766	T→G	5.5%	C20G (TGC→GGC) ‡	ychS →	putative uncharacterized protein YchS
RA	1,286,767	G→C	6.3%	C20S (TGC→TCC) ‡	ychS →	putative uncharacterized protein YchS
RA	1,286,787	G→A	8.5%	A27T (GCG→ACG)	ychS →	putative uncharacterized protein YchS
RA	1,286,793	A→G	10.2%	K29E (AAG→GAG)	ychS →	putative uncharacterized protein YchS
RA	1,286,796	T→C	8.0%	S30P (TCG→CCG)	ychS →	putative uncharacterized protein YchS
RA	1,286,805	G→A	10.6%	G33S (GGT→AGT)	ychS →	putative uncharacterized protein YchS
RA	1,286,983	A→G	10.8%	*92W (TAG→TGG)	ychS →	putative uncharacterized protein YchS
RA	1,287,419	T→A	5.1%	intergenic (‑91/+119)	tyrV ← / ← tyrT	tRNA‑Tyr/tRNA‑Tyr
RA	1,287,420	G→C	5.6%	intergenic (‑92/+118)	tyrV ← / ← tyrT	tRNA‑Tyr/tRNA‑Tyr
RA	1,287,421	T→A	5.1%	intergenic (‑93/+117)	tyrV ← / ← tyrT	tRNA‑Tyr/tRNA‑Tyr
JC JC	1,293,032	IS1 (–) +8 bp	100%	intergenic (‑110/‑488)	hns ← / → tdk	DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase
RA	1,297,267	A→G	5.1%	V285V (GTT→GTC)	adhE ←	aldehyde‑alcohol dehydrogenase
RA	1,299,267:1	+A	8.5%	intergenic (+22/‑264)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,270	C→G	8.3%	intergenic (+25/‑261)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,273	Δ1 bp	8.3%	intergenic (+28/‑258)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,302,827	G→A	6.1%	intergenic (+14/‑72)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,834	G→C	5.9%	intergenic (+21/‑65)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,835	T→A	5.9%	intergenic (+22/‑64)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,836	G→C	6.0%	intergenic (+23/‑63)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,302,843	T→C	5.3%	intergenic (+30/‑56)	oppA → / → oppB	oligopeptide ABC transporter periplasmic binding protein/murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,303,657	T→A	6.1%	I253I (ATT→ATA)	oppB →	murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,303,658	T→A	6.1%	Y254N (TAT→AAT)	oppB →	murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
RA	1,306,787	G→A	10.2%	intergenic (+19/+34)	oppF → / ← yciU	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF/DUF440 domain‑containing protein YciU
RA	1,306,788	T→C	10.5%	intergenic (+20/+33)	oppF → / ← yciU	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF/DUF440 domain‑containing protein YciU
RA	1,322,394	C→G	6.8%	D185H (GAC→CAC)	trpE ←	anthranilate synthase subunit TrpE
RA	1,322,396	A→T	6.7%	I184N (ATT→AAT)	trpE ←	anthranilate synthase subunit TrpE
RA	1,322,398	C→G	6.6%	V183V (GTG→GTC)	trpE ←	anthranilate synthase subunit TrpE
RA	1,324,837	A→C	8.4%	Y31S (TAT→TCT) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,838	T→A	8.5%	Y31* (TAT→TAA) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,839	G→T	8.5%	E32* (GAA→TAA)	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,327,213	C→T	7.5%	T121I (ACC→ATC)	rluB →	23S rRNA pseudouridine(2605) synthase
RA	1,327,216	A→G	7.2%	D122G (GAT→GGT)	rluB →	23S rRNA pseudouridine(2605) synthase
RA	1,344,033	A→G	10.6%	L105P (CTG→CCG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,036	G→C	10.4%	T104S (ACT→AGT)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,039	C→T	10.0%	R103Q (CGG→CAG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,351,774	G→A	5.3%	intergenic (‑14/+54)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,776	T→G	5.4%	intergenic (‑16/+52)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,777	T→A	5.3%	intergenic (‑17/+51)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,779	A→T	5.5%	intergenic (‑19/+49)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,781	T→A	5.4%	intergenic (‑21/+47)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,782	C→A	5.7%	intergenic (‑22/+46)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,351,784	T→C	5.6%	intergenic (‑24/+44)	ycjD ← / ← sapF	DUF559 domain‑containing protein YcjD/putrescine ABC exporter ATP binding protein SapF
RA	1,354,220	C→A	8.6%	G100V (GGT→GTT)	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,223	A→G	9.3%	V99A (GTG→GCG) ‡	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,224	C→T	8.9%	V99M (GTG→ATG) ‡	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,354,227	T→G	9.3%	T98P (ACC→CCC)	sapC ←	putrescine ABC exporter membrane protein SapC
RA	1,357,224	G→A	10.0%	intergenic (‑114/+199)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,227	A→G	9.7%	intergenic (‑117/+196)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,230	T→A	9.2%	intergenic (‑120/+193)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,233	C→T	9.5%	intergenic (‑123/+190)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,236	T→C	9.4%	intergenic (‑126/+187)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,361,936	G→T	5.6%	G9V (GGA→GTA)	puuR →	DNA‑binding transcriptional repressor PuuR
RA	1,376,207	C→A	6.5%	A58A (GCC→GCA)	ycjR →	putative ketohexose‑3‑epimerase YcjR
RA	1,376,208	T→G	7.1%	C59G (TGC→GGC)	ycjR →	putative ketohexose‑3‑epimerase YcjR
RA	1,376,953	G→C	5.5%	C41S (TGT→TCT) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,376,954	T→A	5.5%	C41* (TGT→TGA) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,381,915	G→T	6.1%	intergenic (+13/‑32)	ymjB → / → ompG	hypothetical protein/outer membrane porin G
RA	1,381,918	A→C	6.0%	intergenic (+16/‑29)	ymjB → / → ompG	hypothetical protein/outer membrane porin G
RA	1,386,750	C→G	6.6%	L11V (CTC→GTC)	tyrR →	DNA‑binding transcriptional dual regulator TyrR
RA	1,408,537	A→T	7.2%	E163V (GAG→GTG)	zntB →	Zn(2(+)):H(+) symporter
RA	1,408,546	A→T	6.4%	H166L (CAC→CTC)	zntB →	Zn(2(+)):H(+) symporter
RA	1,409,558	G→T	5.4%	T16T (ACG→ACT)	dbpA →	ATP‑dependent RNA helicase DbpA
RA	1,413,029	G→C	7.5%	S69R (AGC→AGG) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,031	T→A	6.9%	S69C (AGC→TGC) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,033	G→C	7.4%	S68C (TCC→TGC)	intR ←	Rac prophage; putative integrase
RA	1,413,964	C→T	5.6%	intergenic (‑37/+20)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,413,966	T→A	5.5%	intergenic (‑39/+18)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,413,968	A→G	5.5%	intergenic (‑41/+16)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,426,178	A→T	8.6%	intergenic (+198/‑276)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,417	T→C	6.8%	intergenic (+437/‑37)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,418	T→G	6.7%	intergenic (+438/‑36)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,421	C→A	6.7%	intergenic (+441/‑33)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,422	G→A	6.7%	intergenic (+442/‑32)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,438,536	A→C	6.5%	L750R (CTG→CGG)	ydbK ←	putative pyruvate‑flavodoxin oxidoreductase
RA	1,438,541	A→G	6.3%	C748C (TGT→TGC) ‡	ydbK ←	putative pyruvate‑flavodoxin oxidoreductase
RA	1,438,542	C→T	6.3%	C748Y (TGT→TAT) ‡	ydbK ←	putative pyruvate‑flavodoxin oxidoreductase
RA	1,438,547	G→T	6.6%	T746T (ACC→ACA)	ydbK ←	putative pyruvate‑flavodoxin oxidoreductase
RA	1,441,833	G→C	8.5%	intergenic (‑90/+21)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,835	A→T	8.5%	intergenic (‑92/+19)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,837	G→C	8.4%	intergenic (‑94/+17)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,444,038	C→A	5.2%	L330M (CTG→ATG)	ydbH →	PF11739 family protein YdbH
RA	1,446,357:1	+T	8.9%	intergenic (+151/+21)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,362	Δ1 bp	8.7%	intergenic (+156/+16)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,785	T→A	7.8%	T167S (ACA→TCA)	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,786	T→A	8.0%	E166D (GAA→GAT) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,787	T→A	7.9%	E166V (GAA→GTA) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,449,050	T→A	5.1%	intergenic (+32/+26)	feaB → / ← tynA	phenylacetaldehyde dehydrogenase/copper‑containing amine oxidase
RA	1,449,799	C→G	9.2%	T517T (ACG→ACC)	tynA ←	copper‑containing amine oxidase
RA	1,449,802	A→G	9.1%	A516A (GCT→GCC) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,803	G→C	9.0%	A516G (GCT→GGT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,804	C→T	8.7%	A516T (GCT→ACT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,807	C→G	8.8%	G515R (GGT→CGT)	tynA ←	copper‑containing amine oxidase
RA	1,457,528	G→A	7.2%	R11Q (CGA→CAA)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,530	G→T	7.2%	V12L (GTA→TTA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,531	T→A	7.1%	V12E (GTA→GAA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,532	A→C	7.3%	V12V (GTA→GTC) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,534	T→C	7.8%	L13S (TTG→TCG)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,976	A→T	8.0%	G160G (GGA→GGT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,979	A→T	7.9%	E161D (GAA→GAT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,981	G→C	8.0%	S162T (AGT→ACT)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,983	A→T	8.2%	I163F (ATC→TTC)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,986	A→T	7.9%	T164S (ACC→TCC)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,461,488	G→C	5.7%	G199A (GGC→GCC)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,491	T→G	6.1%	I200S (ATT→AGT) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,492	T→A	5.6%	I200I (ATT→ATA) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,493	C→A	5.8%	L201M (CTG→ATG)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,496	G→C	5.7%	A202P (GCT→CCT)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,466,138	G→A	5.5%	pseudogene (747/2518 nt)	ydbA →	putative outer membrane protein, N‑terminal fragment
RA	1,466,144	G→T	6.4%	pseudogene (753/2518 nt)	ydbA →	putative outer membrane protein, N‑terminal fragment
RA	1,466,604	G→A	5.5%	pseudogene (1213/2518 nt)	ydbA →	putative outer membrane protein, N‑terminal fragment
RA	1,477,612	G→T	6.7%	intergenic (+162/‑9)	ydbD → / → ynbA	DUF2773 domain‑containing protein YdbD/putative inner membrane protein
RA	1,477,613	G→C	5.5%	intergenic (+163/‑8)	ydbD → / → ynbA	DUF2773 domain‑containing protein YdbD/putative inner membrane protein
RA	1,477,614	A→C	5.4%	intergenic (+164/‑7)	ydbD → / → ynbA	DUF2773 domain‑containing protein YdbD/putative inner membrane protein
RA	1,482,222	A→T	6.4%	intergenic (+21/+33)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,224	T→G	6.5%	intergenic (+23/+31)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,227	C→A	6.4%	intergenic (+26/+28)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,482,229	A→T	6.3%	intergenic (+28/+26)	ynbD → / ← azoR	putative phosphatase/FMN dependent NADH:quinone oxidoreductase
RA	1,483,342	G→C	6.3%	Q94H (CAG→CAC)	hrpA →	ATP‑dependent RNA helicase HrpA
RA	1,483,343	G→C	6.2%	V95L (GTG→CTG)	hrpA →	ATP‑dependent RNA helicase HrpA
RA	1,499,361	A→G	8.6%	N142D (AAC→GAC)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,499,365	A→T	9.1%	Q143L (CAG→CTG)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,499,369	C→T	9.0%	V144V (GTC→GTT)	rimL →	ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,517,055	C→A	10.4%	intergenic (+53/+44)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,057	C→A	9.6%	intergenic (+55/+42)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,059	G→C	9.6%	intergenic (+57/+40)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,061	T→G	9.8%	intergenic (+59/+38)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,063	T→G	10.0%	intergenic (+61/+36)	patD → / ← yncL	gamma‑aminobutyraldehyde dehydrogenase/uncharacterized protein YncL
RA	1,517,481	C→G	6.3%	R31R (CGC→CGG)	ortT →	orphan toxin OrtT
RA	1,517,484	C→G	5.9%	I32M (ATC→ATG)	ortT →	orphan toxin OrtT
RA	1,520,080	G→T	5.6%	intergenic (+16/‑182)	curA → / → mcbR	NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional dual regulator McbR
RA	1,520,083	A→C	6.9%	intergenic (+19/‑179)	curA → / → mcbR	NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional dual regulator McbR
RA	1,524,458:1	+T	6.8%	intergenic (+90/+23)	yncE → / ← ansP	PQQ‑like domain‑containing protein YncE/L‑asparagine transporter
RA	1,524,463	Δ1 bp	6.7%	intergenic (+95/+18)	yncE → / ← ansP	PQQ‑like domain‑containing protein YncE/L‑asparagine transporter
RA	1,533,707	G→T	5.3%	P49T (CCT→ACT)	yddH ←	flavin reductase‑like protein YddH
RA	1,533,713	A→C	5.5%	F47V (TTT→GTT)	yddH ←	flavin reductase‑like protein YddH
RA	1,536,867	T→A	6.2%	Y148F (TAC→TTC) ‡	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,868	A→G	6.2%	Y148H (TAC→CAC) ‡	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,869	C→G	6.5%	W147C (TGG→TGC)	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,873	G→C	6.8%	P146R (CCG→CGG)	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,877	C→G	6.4%	A145P (GCA→CCA)	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,878	C→T	6.3%	E144E (GAG→GAA) ‡	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,536,879	T→A	6.8%	E144V (GAG→GTG) ‡	narW ←	NarW, putative private chaperone for NarZ nitrate reductase subunit
RA	1,540,645	G→C	6.6%	A649G (GCC→GGC) ‡	narZ ←	nitrate reductase Z subunit alpha
RA	1,540,646	C→G	6.2%	A649P (GCC→CCC) ‡	narZ ←	nitrate reductase Z subunit alpha
RA	1,540,647	G→C	6.2%	R648R (CGC→CGG)	narZ ←	nitrate reductase Z subunit alpha
RA	1,552,191	C→A	18.6%	intergenic (+200/+207)	fdnI → / ← yddM	formate dehydrogenase N subunit gamma/putative DNA‑binding transcriptional regulator YddM
RA	1,555,781	G→C	7.5%	intergenic (‑112/+45)	maeA ← / ← sra	malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22
RA	1,555,782	C→T	7.7%	intergenic (‑113/+44)	maeA ← / ← sra	malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22
RA	1,555,783	A→G	7.5%	intergenic (‑114/+43)	maeA ← / ← sra	malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22
RA	1,555,784	G→C	7.5%	intergenic (‑115/+42)	maeA ← / ← sra	malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22
RA	1,567,466	G→C	6.2%	intergenic (‑247/+38)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,467	G→T	5.7%	intergenic (‑248/+37)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,469	A→T	6.5%	intergenic (‑250/+35)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,471	A→C	6.5%	intergenic (‑252/+33)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,472	G→C	6.5%	intergenic (‑253/+32)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,579,563	G→T	6.7%	G7* (GGA→TGA) ‡	yneP →	protein YneP
RA	1,579,564	G→A	6.5%	G7E (GGA→GAA) ‡	yneP →	protein YneP
RA	1,579,569	T→C	6.4%	Y9H (TAT→CAT) ‡	yneP →	protein YneP
RA	1,579,570	A→C	6.4%	Y9S (TAT→TCT) ‡	yneP →	protein YneP
RA	1,588,476	T→A	7.7%	M122L (ATG→TTG)	ydeS ←	putative fimbrial protein YdeS
RA	1,588,479	T→A	7.2%	N121Y (AAT→TAT)	ydeS ←	putative fimbrial protein YdeS
RA	1,590,601	G→C	5.0%	intergenic (‑65/+253)	yneL ← / ← hipA	putative HTH‑type transcriptional regulator YneL/serine/threonine kinase HipA
RA	1,596,492	C→T	6.4%	pseudogene (1595/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,499	C→A	6.8%	pseudogene (1588/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,501	T→A	7.6%	pseudogene (1586/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,503	T→G	7.1%	pseudogene (1584/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,596,510	A→G	6.6%	pseudogene (1577/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,597,272	T→A	7.5%	pseudogene (815/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,598,527	T→G	6.1%	intergenic (‑441/+90)	yneO ← / ← lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase
RA	1,598,529	A→T	6.3%	intergenic (‑443/+88)	yneO ← / ← lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase
RA	1,606,480	G→C	5.1%	M127I (ATG→ATC)	lsrF →	3‑hydroxy‑2,4‑pentadione 5‑phosphate thiolase
RA	1,609,555	Δ1 bp	5.6%	coding (1126/1452 nt)	uxaB ←	tagaturonate reductase
RA	1,609,561:1	+C	6.2%	coding (1120/1452 nt)	uxaB ←	tagaturonate reductase
RA	1,613,276	G→T	9.5%	intergenic (‑25/+39)	glsB ← / ← sad	glutaminase 2/NAD(+)‑dependent succinate semialdehyde dehydrogenase
RA	1,613,277	A→T	9.4%	intergenic (‑26/+38)	glsB ← / ← sad	glutaminase 2/NAD(+)‑dependent succinate semialdehyde dehydrogenase
RA	1,613,278	A→T	9.7%	intergenic (‑27/+37)	glsB ← / ← sad	glutaminase 2/NAD(+)‑dependent succinate semialdehyde dehydrogenase
RA	1,613,279	A→C	9.2%	intergenic (‑28/+36)	glsB ← / ← sad	glutaminase 2/NAD(+)‑dependent succinate semialdehyde dehydrogenase
RA	1,620,224	C→G	7.9%	intergenic (+17/+14)	marB → / ← eamA	multiple antibiotic resistance protein/cysteine/O‑acetylserine exporter EamA
RA	1,620,227	C→G	7.9%	intergenic (+20/+11)	marB → / ← eamA	multiple antibiotic resistance protein/cysteine/O‑acetylserine exporter EamA
RA	1,622,830	A→G	5.1%	noncoding (85/98 nt)	mgrR ←	small regulatory RNA MgrR
RA	1,622,833	A→T	5.1%	noncoding (82/98 nt)	mgrR ←	small regulatory RNA MgrR
RA	1,622,837	C→T	5.2%	noncoding (78/98 nt)	mgrR ←	small regulatory RNA MgrR
RA	1,629,435	G→A	5.9%	intergenic (+17/+18)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,629,436	A→T	5.9%	intergenic (+18/+17)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,629,437	T→C	6.0%	intergenic (+19/+16)	ydfZ → / ← ydfI	putative selenoprotein YdfZ/putative oxidoreductase YdfI
RA	1,642,370	C→G	9.8%	intergenic (+159/+119)	ynfS → / ← ydfT	Qin prophage; protein YnfS/Qin prophage; putative antitermination protein Q
RA	1,642,373	C→G	9.7%	intergenic (+162/+116)	ynfS → / ← ydfT	Qin prophage; protein YnfS/Qin prophage; putative antitermination protein Q
RA	1,643,110	T→A	5.1%	K44N (AAA→AAT) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,111	T→G	5.4%	K44T (AAA→ACA) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,116	C→A	5.1%	Q42H (CAG→CAT) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,643,117	T→A	5.1%	Q42L (CAG→CTG) ‡	ydfT ←	Qin prophage; putative antitermination protein Q
RA	1,647,873	C→T	6.0%	intergenic (‑23/‑61)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA
RA	1,647,876	A→G	5.7%	intergenic (‑26/‑58)	dicC ← / → dicA	Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA
RA	1,657,895	A→T	6.0%	intergenic (+25/‑174)	ynfD → / → ynfE	DUF1161 domain‑containing protein YnfD/putative selenate reductase YnfE
RA	1,657,898	A→T	5.2%	intergenic (+28/‑171)	ynfD → / → ynfE	DUF1161 domain‑containing protein YnfD/putative selenate reductase YnfE
RA	1,659,599	A→T	6.8%	K511* (AAA→TAA) ‡	ynfE →	putative selenate reductase YnfE
RA	1,659,601	A→T	6.9%	K511N (AAA→AAT) ‡	ynfE →	putative selenate reductase YnfE
RA	1,659,603	A→T	6.9%	Y512F (TAT→TTT)	ynfE →	putative selenate reductase YnfE
RA	1,660,194	A→C	6.7%	K709T (AAG→ACG)	ynfE →	putative selenate reductase YnfE
RA	1,660,198	T→A	7.2%	A710A (GCT→GCA)	ynfE →	putative selenate reductase YnfE
RA	1,660,200	C→G	7.7%	A711G (GCC→GGC)	ynfE →	putative selenate reductase YnfE
RA	1,660,202	T→A	6.7%	C712S (TGC→AGC)	ynfE →	putative selenate reductase YnfE
RA	1,660,206	G→T	7.0%	R713L (CGT→CTT)	ynfE →	putative selenate reductase YnfE
RA	1,660,438	A→G	6.3%	S790S (TCA→TCG)	ynfE →	putative selenate reductase YnfE
RA	1,660,442	C→G	6.2%	L792V (CTG→GTG)	ynfE →	putative selenate reductase YnfE
RA	1,660,446	C→T	6.2%	A793V (GCG→GTG)	ynfE →	putative selenate reductase YnfE
RA	1,666,466	T→G	8.1%	Y384* (TAT→TAG)	clcB →	putative chloride:H(+) antiporter ClcB
RA	1,666,468	A→T	7.4%	Q385L (CAG→CTG)	clcB →	putative chloride:H(+) antiporter ClcB
RA	1,666,470	C→A	7.7%	L386I (CTA→ATA)	clcB →	putative chloride:H(+) antiporter ClcB
RA	1,672,481	A→T	5.7%	A174A (GCA→GCT)	ydgD →	putative serine protease YdgD
RA	1,684,016	A→G	7.4%	S379G (AGC→GGC)	rstB →	sensory histidine kinase RstB
RA	1,684,019	C→T	7.2%	R380W (CGG→TGG)	rstB →	sensory histidine kinase RstB
RA	1,689,817	C→A	5.1%	intergenic (+66/‑35)	manA → / → ydgA	mannose‑6‑phosphate isomerase/conserved protein YdgA
RA	1,689,819	A→T	5.3%	intergenic (+68/‑33)	manA → / → ydgA	mannose‑6‑phosphate isomerase/conserved protein YdgA
RA	1,689,821	T→G	5.5%	intergenic (+70/‑31)	manA → / → ydgA	mannose‑6‑phosphate isomerase/conserved protein YdgA
RA	1,693,416	A→G	5.6%	L283P (CTG→CCG) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,693,417	G→C	5.7%	L283V (CTG→GTG) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,693,418	C→T	5.8%	P282P (CCG→CCA)	uidB ←	glucuronide:H(+) symporter
RA	1,697,242	Δ1 bp	6.6%	intergenic (‑190/+31)	uidR ← / ← hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
RA	1,697,245	C→T	6.2%	intergenic (‑193/+28)	uidR ← / ← hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
RA	1,697,246	A→G	6.2%	intergenic (‑194/+27)	uidR ← / ← hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
RA	1,697,248:1	+T	6.5%	intergenic (‑196/+25)	uidR ← / ← hdhA	DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase
RA	1,702,495	C→G	5.8%	A88G (GCC→GGC)	add →	adenosine deaminase
RA	1,702,500	C→G	5.7%	H90D (CAC→GAC)	add →	adenosine deaminase
RA	1,702,505	C→G	5.8%	G91G (GGC→GGG)	add →	adenosine deaminase
RA	1,703,251	A→T	7.6%	intergenic (+17/+17)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,703,252	A→T	7.9%	intergenic (+18/+16)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,703,593	A→G	6.0%	I239T (ATC→ACC)	ydgJ ←	putative oxidoreductase YdgJ
RA	1,703,598	C→T	6.0%	R237R (CGG→CGA)	ydgJ ←	putative oxidoreductase YdgJ
RA	1,707,028	T→G	6.3%	V37G (GTA→GGA) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,029	A→G	6.4%	V37V (GTA→GTG) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,030	C→T	6.4%	P38S (CCC→TCC) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,031	C→A	6.7%	P38H (CCC→CAC) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,225	T→A	6.5%	L103I (TTA→ATA) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,707,226	T→A	6.7%	L103* (TTA→TAA) ‡	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,655	A→G	6.5%	E579E (GAA→GAG)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,662	C→G	8.5%	Q582E (CAA→GAA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,758	G→C	20.0%	E614Q (GAA→CAA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,708,901	A→C	28.5%	R661R (CGA→CGC)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,709,038	T→A	8.3%	V707E (GTA→GAA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,726,994	C→G	6.5%	S112R (AGC→AGG)	nemA →	N‑ethylmaleimide reductase
RA	1,726,995	C→T	6.5%	L113L (CTG→TTG)	nemA →	N‑ethylmaleimide reductase
RA	1,727,000	A→G	5.7%	Q114Q (CAA→CAG)	nemA →	N‑ethylmaleimide reductase
RA	1,727,001	C→G	5.9%	P115A (CCT→GCT)	nemA →	N‑ethylmaleimide reductase
RA	1,728,253	C→T	10.0%	intergenic (+9/‑94)	gloA → / → rnt	glyoxalase I/RNase T
RA	1,730,699	C→G	6.6%	A538G (GCT→GGT)	lhr →	putative ATP‑dependent helicase Lhr
RA	1,735,205	C→A	5.7%	H257Q (CAC→CAA)	mepH →	peptidoglycan DD‑endopeptidase MepH
RA	1,735,206	T→C	6.0%	Y258H (TAT→CAT)	mepH →	peptidoglycan DD‑endopeptidase MepH
RA	1,735,209	G→A	6.0%	V259I (GTT→ATT) ‡	mepH →	peptidoglycan DD‑endopeptidase MepH
RA	1,735,210	T→G	5.8%	V259G (GTT→GGT) ‡	mepH →	peptidoglycan DD‑endopeptidase MepH
RA	1,736,097	T→A	6.9%	intergenic (+138/+24)	sodB → / ← ydhP	superoxide dismutase (Fe)/putative transporter YdhP
RA	1,736,100	T→A	6.4%	intergenic (+141/+21)	sodB → / ← ydhP	superoxide dismutase (Fe)/putative transporter YdhP
RA	1,737,434	A→C	6.0%	intergenic (‑144/+22)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,435	A→G	5.9%	intergenic (‑145/+21)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,438	C→T	6.1%	intergenic (‑148/+18)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,737,439	G→T	6.2%	intergenic (‑149/+17)	ydhP ← / ← ynhF	putative transporter YdhP/stress response membrane protein YnhF
RA	1,743,155	C→G	5.4%	D30H (GAC→CAC)	ribC ←	riboflavin synthase
RA	1,743,157	G→A	5.5%	P29L (CCC→CTC)	ribC ←	riboflavin synthase
RA	1,743,160	A→T	5.5%	L28* (TTA→TAA)	ribC ←	riboflavin synthase
RA	1,743,163	T→C	5.4%	E27G (GAG→GGG)	ribC ←	riboflavin synthase
RA	1,747,297	A→T	7.5%	N56I (AAT→ATT)	ydhS →	FAD/NAD(P) binding domain‑containing protein YdhS
RA	1,747,299	A→T	7.4%	I57F (ATT→TTT)	ydhS →	FAD/NAD(P) binding domain‑containing protein YdhS
RA	1,764,687	T→C	7.9%	intergenic (‑301/+26)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,693	C→T	8.1%	intergenic (‑307/+20)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,694	G→C	8.2%	intergenic (‑308/+19)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,695	A→G	7.7%	intergenic (‑309/+18)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,764,701	G→A	8.2%	intergenic (‑315/+12)	sufA ← / ← rydB	iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
RA	1,765,157	T→A	8.4%	intergenic (‑35/+65)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,160	C→G	9.2%	intergenic (‑38/+62)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,161	A→G	8.6%	intergenic (‑39/+61)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,162	C→T	8.5%	intergenic (‑40/+60)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,163	C→G	8.5%	intergenic (‑41/+59)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,765,166	T→A	8.3%	intergenic (‑44/+56)	ydiH ← / ← menI	protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
RA	1,770,203	T→A	9.1%	intergenic (+17/‑169)	ydiK → / → rprA	putative transporter YdiK/small regulatory RNA RprA
RA	1,770,204	C→G	8.7%	intergenic (+18/‑168)	ydiK → / → rprA	putative transporter YdiK/small regulatory RNA RprA
RA	1,770,205	T→A	8.3%	intergenic (+19/‑167)	ydiK → / → rprA	putative transporter YdiK/small regulatory RNA RprA
RA	1,770,387	C→T	5.8%	noncoding (16/105 nt)	rprA →	small regulatory RNA RprA
RA	1,770,390	A→G	6.0%	noncoding (19/105 nt)	rprA →	small regulatory RNA RprA
RA	1,778,364	C→T	5.3%	intergenic (+17/+26)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,367	C→G	5.3%	intergenic (+20/+23)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,372	C→G	5.1%	intergenic (+25/+18)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,375	A→G	5.4%	intergenic (+28/+15)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,788,336	A→T	8.8%	intergenic (+58/‑99)	ppsR → / → aroH	posphoenolpyruvate synthetase regulatory protein/3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
RA	1,792,240	T→A	6.4%	intergenic (‑220/+27)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,792,241	A→T	6.6%	intergenic (‑221/+26)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,792,242	T→A	6.9%	intergenic (‑222/+25)	ydiV ← / ← nlpC	anti‑FlhDC factor/NlpC/P60 family lipoprotein NlpC
RA	1,799,167	A→C	5.2%	intergenic (‑225/+59)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,168	C→A	5.3%	intergenic (‑226/+58)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,169	T→G	5.3%	intergenic (‑227/+57)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,170	G→T	5.3%	intergenic (‑228/+56)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,808,680	T→A	7.3%	intergenic (+24/+17)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,682	C→G	7.2%	intergenic (+26/+15)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,684	T→A	7.1%	intergenic (+28/+13)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,810,062	T→C	5.7%	intergenic (+14/‑149)	hxpB → / → ydjM	hexitol phosphatase B/putative inner membrane protein regulated by LexA
RA	1,810,065	T→G	6.8%	intergenic (+17/‑146)	hxpB → / → ydjM	hexitol phosphatase B/putative inner membrane protein regulated by LexA
RA	1,810,066	C→A	5.9%	intergenic (+18/‑145)	hxpB → / → ydjM	hexitol phosphatase B/putative inner membrane protein regulated by LexA
RA	1,810,069	G→A	5.9%	intergenic (+21/‑142)	hxpB → / → ydjM	hexitol phosphatase B/putative inner membrane protein regulated by LexA
RA	1,821,241	T→A	5.3%	intergenic (‑27/+58)	chbC ← / ← chbB	N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component/N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component
RA	1,821,243	A→T	5.4%	intergenic (‑29/+56)	chbC ← / ← chbB	N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component/N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component
RA	1,821,244	A→T	5.1%	intergenic (‑30/+55)	chbC ← / ← chbB	N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component/N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component
RA	1,822,072	A→T	5.0%	I62N (ATC→AAC)	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,823,335	G→C	7.8%	intergenic (+50/‑180)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,823,338	G→C	8.5%	intergenic (+53/‑177)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,825,936	T→A	5.1%	intergenic (‑311/+19)	spy ← / ← astE	ATP‑independent periplasmic chaperone/succinylglutamate desuccinylase
RA	1,825,937	G→T	5.8%	intergenic (‑312/+18)	spy ← / ← astE	ATP‑independent periplasmic chaperone/succinylglutamate desuccinylase
RA	1,825,938	A→C	5.2%	intergenic (‑313/+17)	spy ← / ← astE	ATP‑independent periplasmic chaperone/succinylglutamate desuccinylase
RA	1,825,939	T→A	5.2%	intergenic (‑314/+16)	spy ← / ← astE	ATP‑independent periplasmic chaperone/succinylglutamate desuccinylase
RA	1,829,322	A→C	6.7%	L138R (CTG→CGG)	astD ←	aldehyde dehydrogenase
RA	1,829,328	C→G	5.8%	G136A (GGC→GCC)	astD ←	aldehyde dehydrogenase
RA	1,829,334	G→T	6.0%	P134Q (CCG→CAG)	astD ←	aldehyde dehydrogenase
RA	1,836,904	A→G	8.0%	S278G (AGC→GGC) ‡	ynjB →	putative ABC transporter periplasmic binding protein YnjB
RA	1,836,905	G→C	8.1%	S278T (AGC→ACC) ‡	ynjB →	putative ABC transporter periplasmic binding protein YnjB
RA	1,836,906	C→T	8.1%	S278S (AGC→AGT) ‡	ynjB →	putative ABC transporter periplasmic binding protein YnjB
RA	1,840,795	G→A	9.6%	L203L (CTC→CTT)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,798	C→T	9.5%	S202S (TCG→TCA) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,799	G→C	9.6%	S202W (TCG→TGG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,800	A→G	9.8%	S202P (TCG→CCG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,803	T→C	10.0%	K201E (AAG→GAG)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,850,715	Δ1 bp	9.0%	intergenic (+22/‑145)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,850,719:1	+T	9.2%	intergenic (+26/‑141)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,851,204	A→C	6.3%	T115T (ACA→ACC)	ansA →	L‑asparaginase 1
RA	1,851,205	G→C	6.7%	G116R (GGG→CGG) ‡	ansA →	L‑asparaginase 1
RA	1,851,206	G→T	6.7%	G116V (GGG→GTG) ‡	ansA →	L‑asparaginase 1
RA	1,852,038	A→C	6.5%	Q51P (CAG→CCG) ‡	pncA →	nicotinamidase
RA	1,852,039	G→T	7.6%	Q51H (CAG→CAT) ‡	pncA →	nicotinamidase
RA	1,854,021	A→G	5.6%	intergenic (‑42/+75)	ydjE ← / ← ydjF	putative transporter YdjE/putative DNA‑binding transcriptional regulator YdjF
RA	1,854,024	C→A	5.7%	intergenic (‑45/+72)	ydjE ← / ← ydjF	putative transporter YdjE/putative DNA‑binding transcriptional regulator YdjF
RA	1,854,026	C→T	5.8%	intergenic (‑47/+70)	ydjE ← / ← ydjF	putative transporter YdjE/putative DNA‑binding transcriptional regulator YdjF
RA	1,856,333	T→G	8.4%	E199A (GAG→GCG) ‡	ydjH ←	putative sugar kinase YdjH
RA	1,856,334	C→A	8.0%	E199* (GAG→TAG) ‡	ydjH ←	putative sugar kinase YdjH
RA	1,861,419	A→G	6.0%	intergenic (‑87/+283)	ydjL ← / ← yeaC	putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC
RA	1,861,425	A→C	5.8%	intergenic (‑93/+277)	ydjL ← / ← yeaC	putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC
RA	1,861,428	G→T	5.7%	intergenic (‑96/+274)	ydjL ← / ← yeaC	putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC
RA	1,861,434	C→T	5.8%	intergenic (‑102/+268)	ydjL ← / ← yeaC	putative zinc‑binding dehydrogenase YdjL/conserved protein YeaC
RA	1,863,800	T→C	8.5%	intergenic (+34/‑50)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,801	T→G	8.5%	intergenic (+35/‑49)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,802	C→A	9.0%	intergenic (+36/‑48)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,863,803	G→A	8.4%	intergenic (+37/‑47)	gapA → / → yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/putative aldose 1‑epimerase YeaD
RA	1,865,682	G→C	8.3%	intergenic (‑46/+44)	yeaE ← / ← mipA	methylglyoxal reductase YeaE/scaffolding protein that interacts with murein polymerase and murein hydrolase
RA	1,868,859	Δ1 bp	6.2%	intergenic (+17/‑96)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,868,865:1	+G	6.3%	intergenic (+23/‑90)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,870,253	T→C	5.5%	intergenic (+15/‑132)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,254	C→G	5.4%	intergenic (+16/‑131)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,257	T→A	5.5%	intergenic (+19/‑128)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,260	C→G	5.5%	intergenic (+22/‑125)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,261	G→A	5.3%	intergenic (+23/‑124)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,872,230	G→C	6.1%	V64L (GTG→CTG) ‡	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,872,231	T→A	6.2%	V64E (GTG→GAG) ‡	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,872,232	G→C	6.1%	V64V (GTG→GTC) ‡	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,873,691	T→C	6.4%	S40P (TCA→CCA)	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,694	G→C	5.5%	E41Q (GAA→CAA) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,695	A→G	5.3%	E41G (GAA→GGA) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,700	C→T	5.4%	R43C (CGT→TGT) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,701	G→C	5.4%	R43P (CGT→CCT) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,704	G→A	5.6%	G44D (GGC→GAC)	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,885,805	T→A	7.5%	intergenic (+16/‑40)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,807	T→A	7.5%	intergenic (+18/‑38)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,808	T→A	7.6%	intergenic (+19/‑37)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,885,810	T→A	7.6%	intergenic (+21/‑35)	yeaW → / → yeaX	carnitine monooxygenase subunit YeaW/carnitine monooxygenase subunit YeaX
RA	1,896,465	G→A	7.0%	G99D (GGC→GAC)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,896,468	T→G	7.0%	V100G (GTG→GGG)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,896,471	T→G	7.1%	L101R (CTG→CGG)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,896,474	C→A	6.6%	P102Q (CCG→CAG)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,896,477	C→A	6.6%	P103H (CCC→CAC)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,896,480	T→C	6.0%	V104A (GTC→GCC)	nudL →	putative NUDIX hydrolase with low 3‑phosphohydroxypyruvate phosphatase activity
RA	1,898,316	T→C	6.2%	intergenic (+20/‑111)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,318	C→T	6.2%	intergenic (+22/‑109)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,319	A→T	6.1%	intergenic (+23/‑108)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,320	A→G	6.1%	intergenic (+24/‑107)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,898,322	G→A	6.1%	intergenic (+26/‑105)	sdaA → / → pdeD	L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD
RA	1,899,995	A→G	5.4%	G523G (GGA→GGG)	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,899,997	A→G	5.5%	H524R (CAT→CGT)	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,899,999	A→G	5.4%	I525V (ATC→GTC) ‡	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,900,000	T→A	5.0%	I525N (ATC→AAC) ‡	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,900,001	C→T	6.1%	I525I (ATC→ATT) ‡	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,900,003	C→T	6.1%	T526M (ACG→ATG)	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,900,005	C→T	5.5%	P527S (CCC→TCC)	pdeD →	putative c‑di‑GMP phosphodiesterase PdeD
RA	1,906,229	T→G	6.3%	I181S (ATC→AGC) ‡	mntP →	Mn(2(+)) exporter
RA	1,906,230	C→G	6.3%	I181M (ATC→ATG) ‡	mntP →	Mn(2(+)) exporter
RA	1,906,231	C→A	6.3%	L182I (CTC→ATC)	mntP →	Mn(2(+)) exporter
RA	1,912,749	T→A	5.1%	intergenic (‑173/+19)	htpX ← / ← prc	zinc dependent endoprotease/tail‑specific protease
RA	1,912,750	T→A	5.1%	intergenic (‑174/+18)	htpX ← / ← prc	zinc dependent endoprotease/tail‑specific protease
RA	1,912,751	C→A	5.2%	intergenic (‑175/+17)	htpX ← / ← prc	zinc dependent endoprotease/tail‑specific protease
RA	1,932,094	C→G	6.3%	intergenic (+35/+21)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,932,095	T→A	5.8%	intergenic (+36/+20)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,932,096	C→G	5.8%	intergenic (+37/+19)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,946,035	G→T	5.2%	intergenic (‑59/+80)	ruvA ← / ← yobI	Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI
RA	1,948,179	T→A	6.2%	intergenic (‑28/+1)	yebC ← / ← nudB	putative transcriptional regulator YebC/dihydroneopterin triphosphate diphosphatase
RA	1,948,180	T→A	6.2%	*151C (TGA→TGT)	nudB ←	dihydroneopterin triphosphate diphosphatase
RA	1,950,292	C→G	9.3%	A77A (GCG→GCC)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,295:1	+C	9.4%	coding (228/1773 nt)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,301	Δ1 bp	8.8%	coding (222/1773 nt)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,306	C→G	9.3%	G73R (GGC→CGC)	aspS ←	aspartate‑‑tRNA ligase
RA	1,950,954	Δ1 bp	8.3%	coding (123/567 nt)	yecD →	putative hydrolase
RA	1,950,965:1	+C	8.0%	coding (134/567 nt)	yecD →	putative hydrolase
RA	1,972,794	C→A	7.4%	intergenic (‑103/+42)	tar ← / ← cheW	methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW
RA	1,972,795	G→T	7.7%	intergenic (‑104/+41)	tar ← / ← cheW	methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW
RA	1,972,797	A→T	6.6%	intergenic (‑106/+39)	tar ← / ← cheW	methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW
RA	1,972,799	A→C	8.1%	intergenic (‑108/+37)	tar ← / ← cheW	methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW
RA	1,972,800	T→G	6.5%	intergenic (‑109/+36)	tar ← / ← cheW	methyl‑accepting chemotaxis protein Tar/chemotaxis protein CheW
MC JC	1,978,503	Δ776 bp	100%		insB‑5–insA‑5	insB‑5, insA‑5
JC JC	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA‑5 ← / → uspC	IS1 protein InsA/universal stress protein C
RA	1,980,240	C→A	7.3%	S458I (AGC→ATC) ‡	otsA ←	trehalose‑6‑phosphate synthase
RA	1,980,241	T→A	6.8%	S458C (AGC→TGC) ‡	otsA ←	trehalose‑6‑phosphate synthase
RA	1,980,242	T→G	7.2%	R457R (CGA→CGC)	otsA ←	trehalose‑6‑phosphate synthase
RA	1,981,758	G→T	6.4%	N210K (AAC→AAA) ‡	otsB ←	trehalose‑6‑phosphate phosphatase
RA	1,981,760	T→A	6.5%	N210Y (AAC→TAC) ‡	otsB ←	trehalose‑6‑phosphate phosphatase
RA	1,981,762	A→C	6.6%	V209G (GTT→GGT)	otsB ←	trehalose‑6‑phosphate phosphatase
RA	1,981,814	T→A	5.1%	T192S (ACG→TCG)	otsB ←	trehalose‑6‑phosphate phosphatase
RA	1,982,500	T→C	5.0%	intergenic (‑113/+54)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,501	T→C	5.0%	intergenic (‑114/+53)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,504	G→A	5.1%	intergenic (‑117/+50)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,505	G→A	5.1%	intergenic (‑118/+49)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,987,857	C→T	8.1%	intergenic (‑99/+16)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,858	G→C	8.0%	intergenic (‑100/+15)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,859	G→C	7.5%	intergenic (‑101/+14)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,987,860	A→G	7.8%	intergenic (‑102/+13)	yecJ ← / ← azuC	DUF2766 domain‑containing protein YecJ/uncharacterized protein AzuC
RA	1,997,993	C→G	5.1%	A163P (GCC→CCC)	tcyL ←	cystine ABC transporter membrane subunit
RA	1,999,231	T→A	5.5%	T84S (ACT→TCT)	dcyD ←	D‑cysteine desulfhydrase
RA	2,001,926	G→A	6.8%	intergenic (‑137/+184)	fliA ← / ← fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
RA	2,001,927	G→C	6.6%	intergenic (‑138/+183)	fliA ← / ← fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
RA	2,001,928	T→C	6.6%	intergenic (‑139/+182)	fliA ← / ← fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
RA	2,009,731	A→G	11.4%	intergenic (+19/‑90)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,009,732	C→G	11.4%	intergenic (+20/‑89)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,009,733	C→T	11.5%	intergenic (+21/‑88)	yedF → / → yedK	putative sulfurtransferase YedF/putative SOS response‑associated peptidase YedK
RA	2,011,387	A→T	5.2%	pseudogene (965/1129 nt)	yedN ←	putative type III secreted effector, N‑terminal fragment
RA	2,011,388	C→A	5.7%	pseudogene (964/1129 nt)	yedN ←	putative type III secreted effector, N‑terminal fragment
RA	2,024,609	T→G	8.3%	intergenic (+18/+26)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,024,610	T→A	7.3%	intergenic (+19/+25)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,024,611	T→A	7.2%	intergenic (+20/+24)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,024,612	C→A	7.4%	intergenic (+21/+23)	rcsA → / ← dsrB	DNA‑binding transcriptional activator RcsA/protein DsrB
RA	2,025,578	G→A	6.1%	S23N (AGT→AAT) ‡	yedP →	putative mannosyl‑3‑phosphoglycerate phosphatase
RA	2,025,579	T→C	5.4%	S23S (AGT→AGC) ‡	yedP →	putative mannosyl‑3‑phosphoglycerate phosphatase
RA	2,028,158	G→C	5.7%	intergenic (‑141/+30)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,028,159	T→A	5.3%	intergenic (‑142/+29)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,028,160	G→C	5.3%	intergenic (‑143/+28)	dgcQ ← / ← yodC	putative diguanylate cyclase DgcQ/protein YodC
RA	2,033,723	G→C	6.2%	noncoding (75/91 nt)	rseX →	small regulatory RNA RseX
RA	2,041,166	G→T	5.9%	intergenic (+48/‑209)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,173	C→A	5.6%	intergenic (+55/‑202)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,054,976	A→G	6.0%	intergenic (+17/‑85)	shiA → / → amn	shikimate:H(+) symporter/AMP nucleosidase
RA	2,054,977	T→G	6.1%	intergenic (+18/‑84)	shiA → / → amn	shikimate:H(+) symporter/AMP nucleosidase
RA	2,054,978	C→A	5.4%	intergenic (+19/‑83)	shiA → / → amn	shikimate:H(+) symporter/AMP nucleosidase
RA	2,054,979	C→T	6.0%	intergenic (+20/‑82)	shiA → / → amn	shikimate:H(+) symporter/AMP nucleosidase
RA	2,057,595	T→C	7.4%	intergenic (+21/+432)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,597	T→G	7.4%	intergenic (+23/+430)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,599	T→A	7.4%	intergenic (+25/+428)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,601	C→A	7.3%	intergenic (+27/+426)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,603	G→A	7.2%	intergenic (+29/+424)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,059,946	T→A	5.6%	intergenic (+20/+18)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,059,948	T→A	5.2%	intergenic (+22/+16)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,059,950	T→A	5.9%	intergenic (+24/+14)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,060,265	A→C	7.3%	L217R (CTG→CGG)	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,271	C→G	7.3%	G215A (GGT→GCT) ‡	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,272	C→G	7.5%	G215R (GGT→CGT) ‡	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,060,278	G→T	7.4%	R213S (CGC→AGC)	cbl ←	DNA‑binding transcriptional activator Cbl
RA	2,062,354	T→A	6.8%	intergenic (+19/+37)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,355	T→G	6.9%	intergenic (+20/+36)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,356	C→A	7.0%	intergenic (+21/+35)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,357	T→A	7.6%	intergenic (+22/+34)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,068,407	A→G	5.4%	intergenic (‑1086/‑228)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,408	T→A	5.1%	intergenic (‑1087/‑227)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,409	G→C	5.1%	intergenic (‑1088/‑226)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,410	T→A	5.0%	intergenic (‑1089/‑225)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,411	C→T	5.1%	intergenic (‑1090/‑224)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,071,341	T→A	5.2%	noncoding (25/195 nt)	isrC →	small RNA IsrC
RA	2,071,343	T→A	5.4%	noncoding (27/195 nt)	isrC →	small RNA IsrC
RA	2,071,345	T→A	5.5%	noncoding (29/195 nt)	isrC →	small RNA IsrC
RA	2,071,347	T→A	5.2%	noncoding (31/195 nt)	isrC →	small RNA IsrC
RA	2,078,297	Δ1 bp	5.6%	intergenic (+163/‑278)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,301	A→T	5.5%	intergenic (+167/‑274)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,304	A→T	5.4%	intergenic (+170/‑271)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,078,306:1	+G	5.4%	intergenic (+172/‑269)	yeeW → / → yoeF	CP4‑44 prophage; putative uncharacterized protein YeeW/CP4‑44 prophage; putative uncharacterized protein YoeF
RA	2,079,004	G→C	5.6%	intergenic (+73/+28)	yoeF → / ← yeeX	CP4‑44 prophage; putative uncharacterized protein YoeF/DUF496 domain‑containing protein YeeX
RA	2,081,349	C→G	7.2%	intergenic (‑87/+32)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,353	C→G	8.2%	intergenic (‑91/+28)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,354	T→G	7.8%	intergenic (‑92/+27)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,355	C→A	7.8%	intergenic (‑93/+26)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,356	C→G	7.8%	intergenic (‑94/+25)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,360	C→G	8.0%	intergenic (‑98/+21)	sbmC ← / ← dacD	DNA gyrase inhibitor/D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,081,688	A→T	7.8%	I287N (ATT→AAT)	dacD ←	D‑alanyl‑D‑alanine carboxypeptidase DacD
RA	2,089,196	T→A	6.5%	intergenic (‑68/+15)	yeeZ ← / ← yoeB	putative epimerase YeeZ/ribosome‑dependent mRNA interferase toxin YoeB
RA	2,089,197	A→T	6.8%	intergenic (‑69/+14)	yeeZ ← / ← yoeB	putative epimerase YeeZ/ribosome‑dependent mRNA interferase toxin YoeB
RA	2,089,198	T→A	7.0%	intergenic (‑70/+13)	yeeZ ← / ← yoeB	putative epimerase YeeZ/ribosome‑dependent mRNA interferase toxin YoeB
RA	2,090,122	A→G	7.2%	intergenic (+76/‑70)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,124	C→G	6.9%	intergenic (+78/‑68)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,126	C→T	7.4%	intergenic (+80/‑66)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,103,105	C→A	6.9%	pseudogene (285/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,106	T→A	6.3%	pseudogene (284/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,107	T→G	6.3%	pseudogene (283/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,115,847	G→T	7.6%	A17E (GCG→GAG)	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,849	C→G	7.0%	S16S (TCG→TCC) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,851	A→C	9.7%	S16A (TCG→GCG) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,132,787	A→C	100%	I204S (ATC→AGC)	wcaA ←	putative colanic acid biosynthesis glycosyl transferase
RA	2,139,709	G→A	6.0%	intergenic (+224/+50)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,710	C→A	6.1%	intergenic (+225/+49)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,716	T→G	6.6%	intergenic (+231/+43)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,718	T→A	6.6%	intergenic (+233/+41)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,720	C→A	7.0%	intergenic (+235/+39)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,726	T→G	5.6%	intergenic (+241/+33)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,139,727	T→C	5.5%	intergenic (+242/+32)	yegH → / ← asmA	inner membrane protein YegH/putative assembly protein AsmA
RA	2,142,505	G→C	5.4%	R148R (CGC→CGG)	udk ←	uridine/cytidine kinase
RA	2,165,593	C→A	5.6%	intergenic (+72/‑75)	yegP → / → yegQ	DUF1508 domain‑containing protein YegP/putative peptidase YegQ
RA	2,165,597	A→T	7.0%	intergenic (+76/‑71)	yegP → / → yegQ	DUF1508 domain‑containing protein YegP/putative peptidase YegQ
RA	2,165,603	G→C	6.2%	intergenic (+82/‑65)	yegP → / → yegQ	DUF1508 domain‑containing protein YegP/putative peptidase YegQ
RA	2,168,420	A→T	5.8%	intergenic (‑114/‑292)	yegR ← / → yegS	uncharacterized protein YegR/lipid kinase
RA	2,168,423	A→T	6.3%	intergenic (‑117/‑289)	yegR ← / → yegS	uncharacterized protein YegR/lipid kinase
RA	2,172,350	A→T	6.7%	L175Q (CTG→CAG)	gatD ←	galactitol‑1‑phosphate 5‑dehydrogenase
RA	2,172,353	A→T	6.7%	L174Q (CTG→CAG)	gatD ←	galactitol‑1‑phosphate 5‑dehydrogenase
RA	2,173,361	Δ2 bp	100%	pseudogene (917‑918/1358 nt)	gatC ←	galactitol‑specific PTS enzyme IIC component
RA	2,177,332	C→T	6.7%	intergenic (‑128/+180)	gatY ← / ← fbaB	tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I
RA	2,177,337	G→T	7.8%	intergenic (‑133/+175)	gatY ← / ← fbaB	tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I
RA	2,177,340	A→C	7.5%	intergenic (‑136/+172)	gatY ← / ← fbaB	tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I
RA	2,177,345	A→G	7.7%	intergenic (‑141/+167)	gatY ← / ← fbaB	tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I
RA	2,177,559	T→G	5.1%	N336H (AAC→CAC)	fbaB ←	fructose‑bisphosphate aldolase class I
RA	2,177,562	T→A	5.1%	I335F (ATT→TTT)	fbaB ←	fructose‑bisphosphate aldolase class I
RA	2,177,564	A→T	5.2%	L334Q (CTG→CAG)	fbaB ←	fructose‑bisphosphate aldolase class I
RA	2,177,566	T→A	5.4%	K333N (AAA→AAT)	fbaB ←	fructose‑bisphosphate aldolase class I
RA	2,177,569	C→A	5.3%	V332V (GTG→GTT)	fbaB ←	fructose‑bisphosphate aldolase class I
RA	2,181,277	T→A	5.3%	V61E (GTG→GAG)	yegV →	putative sugar kinase YegV
RA	2,181,282	T→C	5.5%	L63L (TTA→CTA) ‡	yegV →	putative sugar kinase YegV
RA	2,181,284	A→T	5.7%	L63F (TTA→TTT) ‡	yegV →	putative sugar kinase YegV
RA	2,181,285	A→T	5.7%	K64* (AAG→TAG) ‡	yegV →	putative sugar kinase YegV
RA	2,181,287	G→A	5.6%	K64K (AAG→AAA) ‡	yegV →	putative sugar kinase YegV
RA	2,181,292	T→A	5.5%	L66H (CTC→CAC)	yegV →	putative sugar kinase YegV
RA	2,193,624	G→C	8.6%	S182* (TCA→TGA)	mrp ←	P‑loop NTPase family protein
RA	2,199,607	A→G	6.8%	intergenic (+2309/‑672)	yehF → / → yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
RA	2,199,608	A→T	6.8%	intergenic (+2310/‑671)	yehF → / → yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
RA	2,199,609	C→T	6.5%	intergenic (+2311/‑670)	yehF → / → yehI	putative protein YehF/DUF4132 domain‑containing protein YehI
RA	2,205,650	A→G	5.2%	Q352R (CAG→CGG)	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,205,656	A→G	5.5%	Y354C (TAT→TGT) ‡	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,205,657	T→A	5.5%	Y354* (TAT→TAA) ‡	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,205,660	T→A	5.4%	Y355* (TAT→TAA)	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,205,661	C→T	5.2%	Q356* (CAA→TAA)	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,205,667	C→T	5.2%	R358C (CGC→TGC)	yehL →	putative AAA(+) MoxR family ATPase YehL
RA	2,211,703	C→T	5.5%	intergenic (+17/+23)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,705	C→T	5.5%	intergenic (+19/+21)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,706	T→A	5.5%	intergenic (+20/+20)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,707	A→G	5.4%	intergenic (+21/+19)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,211,709	A→G	5.4%	intergenic (+23/+17)	yehR → / ← yehS	DUF1307 domain‑containing lipoprotein YehR/conserved protein YehS
RA	2,229,322	C→G	7.4%	intergenic (+257/+116)	yohP → / ← dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase
RA	2,229,323	C→G	7.4%	intergenic (+258/+115)	yohP → / ← dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase
RA	2,236,657	G→A	7.4%	intergenic (+157/+86)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,236,658	C→A	7.5%	intergenic (+158/+85)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,236,664	G→T	6.7%	intergenic (+164/+79)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,236,665	A→C	6.8%	intergenic (+165/+78)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,236,671	T→G	6.6%	intergenic (+171/+72)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,236,672	T→C	6.8%	intergenic (+172/+71)	preA → / ← mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
RA	2,242,213	T→C	9.6%	Q252R (CAA→CGA)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,216	A→C	8.6%	L251R (CTG→CGG) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,217	G→C	9.1%	L251V (CTG→GTG) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,218	G→T	9.1%	A250A (GCC→GCA)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,221	G→A	8.9%	I249I (ATC→ATT)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,569	A→T	5.7%	N133K (AAT→AAA) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,571	T→A	6.2%	N133Y (AAT→TAT) ‡	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,573	A→T	5.7%	F132Y (TTT→TAT)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,884	T→G	5.5%	L28L (CTA→CTC)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,242,887	C→A	5.6%	G27G (GGG→GGT)	yeiB ←	DUF418 domain‑containing protein YeiB
RA	2,247,030	G→A	7.0%	intergenic (‑261/+33)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,031	G→A	7.1%	intergenic (‑262/+32)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,032	T→C	7.2%	intergenic (‑263/+31)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,033	T→C	7.7%	intergenic (‑264/+30)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,255,991	A→T	7.3%	K213* (AAA→TAA) ‡	yeiL →	putative DNA‑binding transcriptional regulator YeiL
RA	2,255,992	A→T	7.3%	K213I (AAA→ATA) ‡	yeiL →	putative DNA‑binding transcriptional regulator YeiL
RA	2,259,549	A→T	7.5%	intergenic (‑253/+170)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,550	A→T	7.6%	intergenic (‑254/+169)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,553	A→T	7.5%	intergenic (‑257/+166)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,554	A→T	7.5%	intergenic (‑258/+165)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,693	A→T	5.0%	intergenic (‑397/+26)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,696	T→C	5.0%	intergenic (‑400/+23)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,259,700	C→T	5.1%	intergenic (‑404/+19)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
RA	2,266,047	T→C	6.5%	intergenic (+25/‑198)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,051	T→C	6.1%	intergenic (+29/‑194)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,052	C→T	6.1%	intergenic (+30/‑193)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,053	A→G	6.1%	intergenic (+31/‑192)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,054	G→A	6.3%	intergenic (+32/‑191)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,058	G→A	6.3%	intergenic (+36/‑187)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,267,734	T→C	5.7%	intergenic (+23/‑95)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,739	C→G	5.3%	intergenic (+28/‑90)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,741	C→G	5.9%	intergenic (+30/‑88)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,743	C→G	6.0%	intergenic (+32/‑86)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,267,748	G→A	5.8%	intergenic (+37/‑81)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,268,132	C→G	5.3%	L102V (CTC→GTC) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,268,133	T→A	5.2%	L102H (CTC→CAC) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,268,134	C→G	5.1%	L102L (CTC→CTG) ‡	yeiR →	zinc‑binding GTPase YeiR
RA	2,279,422	A→G	6.4%	A113A (GCT→GCC)	bcr ←	multidrug efflux pump Bcr
RA	2,279,425	C→T	6.5%	A112A (GCG→GCA)	bcr ←	multidrug efflux pump Bcr
RA	2,279,708	A→T	6.3%	L18Q (CTG→CAG)	bcr ←	multidrug efflux pump Bcr
RA	2,279,711	A→T	6.3%	L17Q (CTG→CAG)	bcr ←	multidrug efflux pump Bcr
RA	2,282,830	T→C	6.7%	intergenic (+29/+110)	rplY → / ← yejK	50S ribosomal subunit protein L25/nucleoid‑associated protein YejK
RA	2,282,831	C→G	6.3%	intergenic (+30/+109)	rplY → / ← yejK	50S ribosomal subunit protein L25/nucleoid‑associated protein YejK
RA	2,282,832	C→G	6.8%	intergenic (+31/+108)	rplY → / ← yejK	50S ribosomal subunit protein L25/nucleoid‑associated protein YejK
RA	2,282,833	G→A	6.2%	intergenic (+32/+107)	rplY → / ← yejK	50S ribosomal subunit protein L25/nucleoid‑associated protein YejK
RA	2,286,311	C→G	9.6%	intergenic (+24/+79)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,313	T→A	9.5%	intergenic (+26/+77)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,315	C→G	9.5%	intergenic (+28/+75)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,302,452	A→C	5.3%	L101R (CTG→CGG)	napA ←	periplasmic nitrate reductase subunit NapA
RA	2,304,485	T→G	8.9%	intergenic (+92/+623)	eco → / ← mqo	serine protease inhibitor ecotin/malate:quinone oxidoreductase
RA	2,304,494	T→G	14.3%	intergenic (+101/+614)	eco → / ← mqo	serine protease inhibitor ecotin/malate:quinone oxidoreductase
RA	2,311,616	C→T	7.5%	intergenic (‑82/+30)	ftp ← / ← ompC	FAD:protein FMN transferase/outer membrane porin C
RA	2,311,619	A→G	7.4%	intergenic (‑85/+27)	ftp ← / ← ompC	FAD:protein FMN transferase/outer membrane porin C
RA	2,312,170	G→C	6.1%	L194V (CTG→GTG)	ompC ←	outer membrane porin C
RA	2,313,153	G→A	5.3%	noncoding (70/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,158	C→G	5.2%	noncoding (75/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,160	C→G	5.1%	noncoding (77/93 nt)	micF →	small regulatory RNA MicF
RA	2,313,165	T→C	5.1%	noncoding (82/93 nt)	micF →	small regulatory RNA MicF
RA	2,319,235	A→T	5.8%	Y214* (TAT→TAA) ‡	rcsC ←	sensory histidine kinase RcsC
RA	2,319,237	A→T	5.8%	Y214N (TAT→AAT) ‡	rcsC ←	sensory histidine kinase RcsC
RA	2,319,239	A→T	5.8%	V213D (GTT→GAT)	rcsC ←	sensory histidine kinase RcsC
RA	2,319,586	C→T	5.0%	A97A (GCG→GCA)	rcsC ←	sensory histidine kinase RcsC
RA	2,323,275	T→A	7.6%	intergenic (+24/‑172)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,280	A→G	7.8%	intergenic (+29/‑167)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,283	G→C	7.1%	intergenic (+32/‑164)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,286	C→T	6.9%	intergenic (+35/‑161)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,291	T→A	7.7%	intergenic (+40/‑156)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,325,037:1	+T	7.5%	coding (282/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,325,042	Δ1 bp	7.5%	coding (287/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,326,750	C→G	7.6%	F214L (TTC→TTG)	atoB →	acetyl‑CoA acetyltransferase
RA	2,326,752	G→C	7.1%	S215T (AGT→ACT)	atoB →	acetyl‑CoA acetyltransferase
RA	2,326,754	C→G	7.0%	Q216E (CAA→GAA)	atoB →	acetyl‑CoA acetyltransferase
RA	2,328,953	C→A	7.0%	G282V (GGC→GTC)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,957	G→C	6.9%	P281A (CCC→GCC)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,959	T→G	6.9%	N280T (AAT→ACT)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,961	T→A	6.9%	V279V (GTA→GTT) ‡	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,963	C→A	7.7%	V279L (GTA→TTA) ‡	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,965	G→C	6.7%	A278G (GCA→GGA)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,328,969	T→G	7.8%	T277P (ACG→CCG)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,329,493	T→C	5.1%	D102G (GAT→GGT)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,329,708	A→G	8.3%	G30G (GGT→GGC) ‡	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,329,709	C→G	8.9%	G30A (GGT→GCT) ‡	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,329,710	C→T	9.1%	G30S (GGT→AGT) ‡	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ
RA	2,337,545	C→G	5.8%	E626Q (GAG→CAG)	gyrA ←	DNA gyrase subunit A
RA	2,337,547	A→C	5.7%	L625R (CTG→CGG)	gyrA ←	DNA gyrase subunit A
RA	2,337,550	G→T	6.1%	P624Q (CCG→CAG)	gyrA ←	DNA gyrase subunit A
RA	2,337,552	C→G	6.5%	L623L (CTG→CTC)	gyrA ←	DNA gyrase subunit A
RA	2,338,414	G→T	5.2%	A336E (GCA→GAA)	gyrA ←	DNA gyrase subunit A
RA	2,340,372	A→G	7.8%	intergenic (+83/+45)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,373	A→C	7.5%	intergenic (+84/+44)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,379	T→A	8.0%	intergenic (+90/+38)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,380	T→A	8.1%	intergenic (+91/+37)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,386	G→T	8.2%	intergenic (+97/+31)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,387	C→T	8.2%	intergenic (+98/+30)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,357,653	A→G	6.3%	L250L (CTA→CTG)	rpnE →	inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,357,665	G→A	12.1%	G254G (GGG→GGA)	rpnE →	inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,362,404	G→T	6.8%	intergenic (‑193/+27)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,405	C→T	6.9%	intergenic (‑194/+26)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,407	G→C	7.0%	intergenic (‑196/+24)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,409	A→G	7.8%	intergenic (‑198/+22)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,410	A→C	7.0%	intergenic (‑199/+21)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,363,448	A→G	6.2%	D62D (GAT→GAC) ‡	yfaY ←	IPR008135 CinA family protein YfaY
RA	2,363,449	T→C	6.0%	D62G (GAT→GGT) ‡	yfaY ←	IPR008135 CinA family protein YfaY
RA	2,363,452	G→A	6.0%	A61V (GCC→GTC) ‡	yfaY ←	IPR008135 CinA family protein YfaY
RA	2,363,453	C→T	6.0%	A61T (GCC→ACC) ‡	yfaY ←	IPR008135 CinA family protein YfaY
RA	2,364,995	T→G	10.1%	intergenic (+16/+23)	nudI → / ← ais	pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase
RA	2,364,998	C→A	10.7%	intergenic (+19/+20)	nudI → / ← ais	pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase
RA	2,366,010:1	+T	7.1%	coding (101/1158 nt)	arnB →	UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
RA	2,366,015	Δ1 bp	7.1%	coding (106/1158 nt)	arnB →	UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
RA	2,369,689	A→T	5.9%	I551F (ATC→TTC)	arnA →	fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase
RA	2,369,694	A→T	5.4%	E552D (GAA→GAT)	arnA →	fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase
RA	2,373,177	G→A	5.1%	G96S (GGC→AGC)	arnF →	undecaprenyl‑phosphate‑alpha‑L‑Ara4N flippase ‑ ArnF subunit
RA	2,373,180	T→C	5.2%	W97R (TGG→CGG)	arnF →	undecaprenyl‑phosphate‑alpha‑L‑Ara4N flippase ‑ ArnF subunit
RA	2,375,483	A→T	6.0%	L160L (CTT→CTA) ‡	menC ←	o‑succinylbenzoate synthase
RA	2,375,484	A→T	6.3%	L160H (CTT→CAT) ‡	menC ←	o‑succinylbenzoate synthase
RA	2,383,956	A→T	6.8%	intergenic (+32/+39)	elaD → / ← yfbK	protease ElaD/IPR002035/DUF3520 domain‑containing protein YfbK
RA	2,383,959	A→T	5.9%	intergenic (+35/+36)	elaD → / ← yfbK	protease ElaD/IPR002035/DUF3520 domain‑containing protein YfbK
RA	2,390,012	Δ1 bp	9.8%	intergenic (+48/+36)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,390,016:1	+C	10.1%	intergenic (+52/+32)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,392,498	C→G	7.0%	G182R (GGC→CGC)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,392,500	C→G	7.3%	S181T (AGT→ACT)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,392,502	C→G	7.2%	A180A (GCG→GCC)	nuoM ←	NADH:quinone oxidoreductase subunit M
RA	2,407,890	Δ1 bp	9.5%	coding (330/1218 nt)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,898	A→C	12.3%	Q113P (CAG→CCG) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,899	G→T	12.5%	Q113H (CAG→CAT) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,905:1	+C	10.2%	coding (345/1218 nt)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,976	C→A	5.4%	S139Y (TCC→TAC)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,978	A→C	5.2%	S140R (AGC→CGC)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,981	G→T	5.1%	G141C (GGT→TGT) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,407,983	T→G	5.2%	G141G (GGT→GGG) ‡	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,411,408	A→T	7.2%	intergenic (‑56/+31)	yfbS ← / ← hxpA	putative transporter YfbS/hexitol phosphatase A
RA	2,411,410	G→T	6.6%	intergenic (‑58/+29)	yfbS ← / ← hxpA	putative transporter YfbS/hexitol phosphatase A
RA	2,411,411	A→C	7.3%	intergenic (‑59/+28)	yfbS ← / ← hxpA	putative transporter YfbS/hexitol phosphatase A
RA	2,411,413	A→T	6.7%	intergenic (‑61/+26)	yfbS ← / ← hxpA	putative transporter YfbS/hexitol phosphatase A
RA	2,412,639	T→A	7.2%	intergenic (‑45/+38)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,640	G→T	7.3%	intergenic (‑46/+37)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,642	G→C	7.6%	intergenic (‑48/+35)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,644	A→C	7.0%	intergenic (‑50/+33)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,412,645	T→A	7.6%	intergenic (‑51/+32)	yfbU ← / ← yfbV	UPF0304 family protein YfbU/UPF0208 membrane protein YfbV
RA	2,414,689	C→G	6.7%	intergenic (+17/‑58)	ackA → / → pta	acetate kinase/phosphate acetyltransferase
RA	2,417,340	A→T	5.7%	D87V (GAT→GTT)	yfcC →	putative transporter YfcC
RA	2,417,342	G→C	6.2%	E88Q (GAA→CAA) ‡	yfcC →	putative transporter YfcC
RA	2,417,344	A→T	5.7%	E88D (GAA→GAT) ‡	yfcC →	putative transporter YfcC
RA	2,428,697	A→G	6.8%	intergenic (‑71/+24)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,428,699	A→T	6.8%	intergenic (‑73/+22)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,428,701	C→T	7.0%	intergenic (‑75/+20)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,432,531	C→G	6.9%	A138P (GCA→CCA)	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,432,535	C→T	6.8%	K136K (AAG→AAA) ‡	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,432,537	T→C	7.5%	K136E (AAG→GAG) ‡	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,432,538	G→A	6.9%	F135F (TTC→TTT) ‡	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,432,540	A→G	7.0%	F135L (TTC→CTC) ‡	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,432,544	C→G	7.0%	W133C (TGG→TGC)	folC ←	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
RA	2,441,662	T→G	5.6%	intergenic (‑57/‑102)	fabB ← / → mnmC	beta‑ketoacyl‑[acyl carrier protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
RA	2,449,200	G→A	7.6%	intergenic (+43/+28)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,201	A→T	7.6%	intergenic (+44/+27)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,202	A→T	7.6%	intergenic (+45/+26)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,203	T→C	7.6%	intergenic (+46/+25)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,615	C→G	6.3%	G145G (GGG→GGC) ‡	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,449,616	C→G	6.3%	G145A (GGG→GCG) ‡	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,449,624	Δ1 bp	6.3%	coding (426/822 nt)	yfcO ←	DUF2544 domain‑containing protein YfcO
RA	2,460,614	C→T	6.0%	intergenic (‑145/+36)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,618	C→T	6.0%	intergenic (‑149/+32)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,619	A→T	5.4%	intergenic (‑150/+31)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,620	A→G	6.0%	intergenic (‑151/+30)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,624	A→G	6.4%	intergenic (‑155/+26)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,470,480	A→T	5.2%	intergenic (+18/+597)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,481	T→G	5.1%	intergenic (+19/+596)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,482	C→A	5.6%	intergenic (+20/+595)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,474,878	T→C	8.3%	intergenic (+22/‑106)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; protein YfdQ/CPS‑53 (KpLE1) prophage; 5'‑deoxynucleotidase
RA	2,474,881	G→A	8.3%	intergenic (+25/‑103)	yfdQ → / → yfdR	CPS‑53 (KpLE1) prophage; protein YfdQ/CPS‑53 (KpLE1) prophage; 5'‑deoxynucleotidase
RA	2,477,014	C→A	8.8%	A206S (GCA→TCA)	dsdC ←	DNA‑binding transcriptional dual regulator DsdC
RA	2,477,016	T→A	11.2%	Q205L (CAG→CTG)	dsdC ←	DNA‑binding transcriptional dual regulator DsdC
RA	2,477,018	T→A	9.1%	R204S (AGA→AGT) ‡	dsdC ←	DNA‑binding transcriptional dual regulator DsdC
RA	2,477,020	T→A	10.4%	R204* (AGA→TGA) ‡	dsdC ←	DNA‑binding transcriptional dual regulator DsdC
RA	2,477,022	T→G	10.6%	D203A (GAC→GCC)	dsdC ←	DNA‑binding transcriptional dual regulator DsdC
RA	2,482,839	C→G	6.5%	L167F (TTG→TTC)	emrK ←	tripartite efflux pump membrane fusion protein EmrK
RA	2,491,266	C→G	5.1%	E229Q (GAA→CAA)	oxc ←	oxalyl‑CoA decarboxylase
RA	2,497,023	A→T	6.7%	intergenic (+31/+34)	ypdK → / ← alaC	putative membrane protein YpdK/glutamate‑‑pyruvate aminotransferase AlaC
RA	2,497,024	T→G	6.7%	intergenic (+32/+33)	ypdK → / ← alaC	putative membrane protein YpdK/glutamate‑‑pyruvate aminotransferase AlaC
RA	2,497,025	C→A	6.8%	intergenic (+33/+32)	ypdK → / ← alaC	putative membrane protein YpdK/glutamate‑‑pyruvate aminotransferase AlaC
RA	2,497,026	A→T	6.8%	intergenic (+34/+31)	ypdK → / ← alaC	putative membrane protein YpdK/glutamate‑‑pyruvate aminotransferase AlaC
RA	2,507,106	A→G	7.4%	G263G (GGT→GGC)	fryC ←	putative PTS enzyme IIC component FryC
RA	2,507,109	T→G	7.0%	A262A (GCA→GCC) ‡	fryC ←	putative PTS enzyme IIC component FryC
RA	2,507,110	G→C	7.1%	A262G (GCA→GGA) ‡	fryC ←	putative PTS enzyme IIC component FryC
RA	2,507,111	C→A	7.2%	A262S (GCA→TCA) ‡	fryC ←	putative PTS enzyme IIC component FryC
RA	2,507,114	C→T	7.2%	A261T (GCC→ACC)	fryC ←	putative PTS enzyme IIC component FryC
RA	2,508,436	T→A	6.5%	intergenic (‑194/+25)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,512,728	C→A	6.4%	intergenic (‑22/‑314)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,729	T→A	6.2%	intergenic (‑23/‑313)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,730	T→A	6.6%	intergenic (‑24/‑312)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,731	T→G	6.6%	intergenic (‑25/‑311)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,517,517	A→T	9.2%	W106R (TGG→AGG)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,517,521	T→C	8.7%	L104L (TTA→TTG)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,517,528	G→A	8.5%	A102V (GCA→GTA)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,517,532	A→T	8.5%	C101S (TGC→AGC)	pdeA ←	putative c‑di‑GMP phosphodiesterase PdeA
RA	2,518,197	C→G	13.2%	noncoding (35/76 nt)	alaW ←	tRNA‑Ala
RA	2,519,222	T→G	8.1%	intergenic (+17/+35)	yfeD → / ← gltX	putative DNA‑binding transcriptional regulator YfeD/glutamate‑‑tRNA ligase
RA	2,519,225	T→A	8.2%	intergenic (+20/+32)	yfeD → / ← gltX	putative DNA‑binding transcriptional regulator YfeD/glutamate‑‑tRNA ligase
RA	2,519,228	C→A	8.8%	intergenic (+23/+29)	yfeD → / ← gltX	putative DNA‑binding transcriptional regulator YfeD/glutamate‑‑tRNA ligase
RA	2,521,344	C→T	6.4%	intergenic (+16/+249)	lysV → / ← xapR	tRNA‑Lys/DNA‑binding transcriptional activator XapR
RA	2,521,346	A→T	6.2%	intergenic (+18/+247)	lysV → / ← xapR	tRNA‑Lys/DNA‑binding transcriptional activator XapR
RA	2,521,348	A→G	5.9%	intergenic (+20/+245)	lysV → / ← xapR	tRNA‑Lys/DNA‑binding transcriptional activator XapR
RA	2,525,907	G→A	5.5%	intergenic (+16/+23)	yfeN → / ← yfeR	conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,525,908	C→G	5.4%	intergenic (+17/+22)	yfeN → / ← yfeR	conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,240	A→G	5.5%	I206T (ATT→ACT) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,241	T→G	5.4%	I206L (ATT→CTT) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,246	G→C	5.5%	P204R (CCG→CGG)	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,248	T→A	5.5%	R203R (CGA→CGT) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,250	G→C	5.5%	R203G (CGA→GGA) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,255	C→A	5.7%	G201V (GGC→GTC) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,526,256	C→T	5.8%	G201S (GGC→AGC) ‡	yfeR ←	putative LysR‑type DNA‑binding transcriptional regulator YfeR
RA	2,533,415	T→A	7.9%	intergenic (+35/‑349)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,416	T→A	8.1%	intergenic (+36/‑348)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,417	T→A	8.0%	intergenic (+37/‑347)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,418	T→A	8.0%	intergenic (+38/‑346)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,537,076	C→G	6.7%	L54L (CTG→CTC)	pdxK ←	pyridoxal kinase I
RA	2,540,269	G→C	8.0%	L182L (CTC→CTG)	cysA ←	sulfate/thiosulfate ABC transporter ATP binding subunit
RA	2,540,599	A→C	7.7%	R72R (CGT→CGG)	cysA ←	sulfate/thiosulfate ABC transporter ATP binding subunit
RA	2,550,574	C→G	9.2%	intergenic (‑29/+67)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,550,576	A→T	8.6%	intergenic (‑31/+65)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,550,578	C→G	8.5%	intergenic (‑33/+63)	yfeX ← / ← yfeY	porphyrinogen peroxidase/DUF1131 domain‑containing lipoprotein YfeY
RA	2,555,201	T→C	5.4%	intergenic (‑19/+27)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,202	G→C	5.4%	intergenic (‑20/+26)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,205	G→C	5.1%	intergenic (‑23/+23)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,555,206	G→A	5.2%	intergenic (‑24/+22)	eutR ← / ← eutK	putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
RA	2,560,321	C→T	5.1%	A22V (GCT→GTT)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,560,330	G→T	5.1%	C25F (TGC→TTC)	yffL →	CPZ‑55 prophage; uncharacterized protein YffL
RA	2,560,996	G→T	19.0%	intergenic (+98/‑372)	yffL → / → yffM	CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM
RA	2,566,266	C→A	6.4%	G207C (GGC→TGC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,566,267	T→G	6.4%	A206A (GCA→GCC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,568,153	A→T	5.3%	intergenic (‑46/+171)	eutH ← / ← eutG	putative inner membrane protein/putative alcohol dehydrogenase in ethanolamine utilization
RA	2,568,154	A→T	5.1%	intergenic (‑47/+170)	eutH ← / ← eutG	putative inner membrane protein/putative alcohol dehydrogenase in ethanolamine utilization
RA	2,568,160	T→G	5.1%	intergenic (‑53/+164)	eutH ← / ← eutG	putative inner membrane protein/putative alcohol dehydrogenase in ethanolamine utilization
RA	2,568,161	T→C	5.1%	intergenic (‑54/+163)	eutH ← / ← eutG	putative inner membrane protein/putative alcohol dehydrogenase in ethanolamine utilization
RA	2,568,254	A→C	5.2%	intergenic (‑147/+70)	eutH ← / ← eutG	putative inner membrane protein/putative alcohol dehydrogenase in ethanolamine utilization
RA	2,579,154	A→C	6.4%	A163A (GCA→GCC)	talA →	transaldolase A
RA	2,579,157	G→T	6.6%	R164R (CGG→CGT)	talA →	transaldolase A
RA	2,581,762	G→A	5.7%	A339V (GCC→GTC)	ypfG ←	DUF1176 domain‑containing protein YpfG
RA	2,581,765	T→C	6.1%	D338G (GAC→GGC)	ypfG ←	DUF1176 domain‑containing protein YpfG
RA	2,582,852	G→C	6.9%	intergenic (‑75/+51)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,855	T→C	6.4%	intergenic (‑78/+48)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,856	T→A	6.8%	intergenic (‑79/+47)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,857	T→A	6.5%	intergenic (‑80/+46)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,858	G→A	6.4%	intergenic (‑81/+45)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,582,861	G→C	6.5%	intergenic (‑84/+42)	ypfG ← / ← nudK	DUF1176 domain‑containing protein YpfG/GDP‑mannose hydrolase
RA	2,589,122	G→A	5.4%	G510S (GGC→AGC)	acrD →	multidrug efflux pump RND permease AcrD
RA	2,589,125	T→C	5.7%	F511L (TTT→CTT)	acrD →	multidrug efflux pump RND permease AcrD
RA	2,590,767	T→C	6.8%	intergenic (+59/+40)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,593,188	T→C	6.2%	N195D (AAT→GAT)	ypfH ←	esterase YpfH
RA	2,593,190	T→A	6.2%	D194V (GAC→GTC)	ypfH ←	esterase YpfH
RA	2,593,192	G→A	6.1%	I193I (ATC→ATT)	ypfH ←	esterase YpfH
RA	2,596,873	Δ1 bp	5.5%	intergenic (‑136/+32)	ypfJ ← / ← purC	uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	2,596,878:1	+G	5.7%	intergenic (‑141/+27)	ypfJ ← / ← purC	uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	2,597,700	A→C	5.0%	intergenic (‑82/+131)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,597,706	T→G	5.1%	intergenic (‑88/+125)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,597,707	T→C	5.0%	intergenic (‑89/+124)	purC ← / ← bamC	phosphoribosylaminoimidazole‑succinocarboxamide synthase/outer membrane protein assembly factor BamC
RA	2,600,107	T→G	5.8%	L68V (TTA→GTA)	gcvR →	putative transcriptional regulator GcvR
RA	2,604,990	G→C	7.4%	T60T (ACG→ACC)	hyfD →	hydrogenase 4 component D
RA	2,604,991	T→A	8.3%	L61M (TTG→ATG) ‡	hyfD →	hydrogenase 4 component D
RA	2,604,992	T→A	8.8%	L61* (TTG→TAG) ‡	hyfD →	hydrogenase 4 component D
RA	2,604,993	G→C	8.6%	L61F (TTG→TTC) ‡	hyfD →	hydrogenase 4 component D
RA	2,624,195	C→G	6.8%	D384E (GAC→GAG)	ppk →	polyphosphate kinase
RA	2,630,918	A→T	8.9%	intergenic (+53/+40)	yfgI → / ← guaA	nalidixic acid resistance protein YfgI/GMP synthetase
RA	2,630,919	G→A	9.1%	intergenic (+54/+39)	yfgI → / ← guaA	nalidixic acid resistance protein YfgI/GMP synthetase
RA	2,630,920	T→C	9.1%	intergenic (+55/+38)	yfgI → / ← guaA	nalidixic acid resistance protein YfgI/GMP synthetase
RA	2,630,921	A→T	9.3%	intergenic (+56/+37)	yfgI → / ← guaA	nalidixic acid resistance protein YfgI/GMP synthetase
RA	2,632,584	A→T	7.5%	intergenic (‑49/+20)	guaA ← / ← guaB	GMP synthetase/inosine 5'‑monophosphate dehydrogenase
RA	2,632,586	G→C	7.7%	intergenic (‑51/+18)	guaA ← / ← guaB	GMP synthetase/inosine 5'‑monophosphate dehydrogenase
RA	2,632,588	A→T	8.1%	intergenic (‑53/+16)	guaA ← / ← guaB	GMP synthetase/inosine 5'‑monophosphate dehydrogenase
RA	2,635,844	C→T	5.6%	intergenic (‑30/+40)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,635,845	A→G	5.6%	intergenic (‑31/+39)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,635,846	T→A	5.5%	intergenic (‑32/+38)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,635,847	T→A	5.4%	intergenic (‑33/+37)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,635,848	C→T	5.5%	intergenic (‑34/+36)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,635,849	A→G	5.5%	intergenic (‑35/+35)	yfgJ ← / ← der	zinc ribbon domain‑containing protein YfgJ/50S ribosomal subunit stability factor
RA	2,636,286	G→T	6.1%	H357Q (CAC→CAA)	der ←	50S ribosomal subunit stability factor
RA	2,636,291	A→C	5.1%	L356V (TTG→GTG)	der ←	50S ribosomal subunit stability factor
RA	2,637,234	C→A	10.9%	K41N (AAG→AAT) ‡	der ←	50S ribosomal subunit stability factor
RA	2,637,235	T→G	10.6%	K41T (AAG→ACG) ‡	der ←	50S ribosomal subunit stability factor
RA	2,638,584	A→T	9.0%	F23L (TTT→TTA)	bamB ←	outer membrane protein assembly factor BamB
RA	2,643,987	A→G	6.4%	V99V (GTT→GTC) ‡	rlmN ←	23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase
RA	2,643,988	A→T	6.4%	V99D (GTT→GAT) ‡	rlmN ←	23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase
RA	2,643,989	C→T	6.4%	V99I (GTT→ATT) ‡	rlmN ←	23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase
RA	2,653,105	G→C	5.4%	W204C (TGG→TGC)	sseA →	3‑mercaptopyruvate sulfurtransferase
RA	2,653,372	T→C	5.3%	intergenic (+33/‑483)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,653,692	A→T	6.3%	intergenic (+353/‑163)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,653,693	A→G	6.4%	intergenic (+354/‑162)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,653,695	A→T	6.5%	intergenic (+356/‑160)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,653,697	C→T	6.3%	intergenic (+358/‑158)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,653,698	A→T	6.7%	intergenic (+359/‑157)	sseA → / → ryfA	3‑mercaptopyruvate sulfurtransferase/small regulatory RNA RyfA
RA	2,654,143	T→A	5.9%	noncoding (289/304 nt)	ryfA →	small regulatory RNA RyfA
RA	2,660,611	G→T	7.1%	Y307* (TAC→TAA) ‡	iscS ←	cysteine desulfurase
RA	2,660,612	T→A	7.1%	Y307F (TAC→TTC) ‡	iscS ←	cysteine desulfurase
RA	2,660,613	A→C	7.0%	Y307D (TAC→GAC) ‡	iscS ←	cysteine desulfurase
RA	2,661,821	C→G	94.0%	C104S (TGC→TCC)	iscR ←	DNA‑binding transcriptional dual regulator IscR
RA	2,661,839	C→G	6.1%	C98S (TGC→TCC)	iscR ←	DNA‑binding transcriptional dual regulator IscR
RA	2,663,466	G→T	9.4%	V9L (GTG→TTG)	suhB →	inositol‑phosphate phosphatase
RA	2,663,474	A→T	9.2%	A11A (GCA→GCT)	suhB →	inositol‑phosphate phosphatase
RA	2,663,482	A→C	7.7%	K14T (AAG→ACG)	suhB →	inositol‑phosphate phosphatase
RA	2,673,783	G→A	5.9%	intergenic (+15/+33)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,784	C→A	6.5%	intergenic (+16/+32)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,790	G→T	5.7%	intergenic (+22/+26)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,791	A→C	5.9%	intergenic (+23/+25)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,797	T→G	5.2%	intergenic (+29/+19)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,673,798	T→C	5.2%	intergenic (+30/+18)	yphA → / ← yphB	putative inner membrane protein/putative aldose 1‑epimerase YphB
RA	2,679,430	Δ1 bp	6.2%	intergenic (‑63/+34)	yphF ← / ← yphG	putative ABC transporter periplasmic binding protein YphF/DUF5107 domain‑containing protein YphG
RA	2,679,434:1	+C	6.3%	intergenic (‑67/+30)	yphF ← / ← yphG	putative ABC transporter periplasmic binding protein YphF/DUF5107 domain‑containing protein YphG
RA	2,681,967	T→C	6.6%	Y260C (TAC→TGC)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,681,969	C→G	6.5%	Q259H (CAG→CAC) ‡	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,681,971	G→A	6.4%	Q259* (CAG→TAG) ‡	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,681,978:1	+G	6.4%	coding (768/3282 nt)	yphG ←	DUF5107 domain‑containing protein YphG
RA	2,684,192	A→G	7.0%	intergenic (+136/+62)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,193	A→C	7.0%	intergenic (+137/+61)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,199	T→G	7.4%	intergenic (+143/+55)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,200	C→A	7.3%	intergenic (+144/+54)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,206	G→T	6.7%	intergenic (+150/+48)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,207	C→T	6.8%	intergenic (+151/+47)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,691,169	A→T	9.5%	noncoding (172/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,171	T→A	9.4%	noncoding (170/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,173	A→T	9.4%	noncoding (168/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,700,862	G→A	5.2%	P46L (CCG→CTG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,863	G→C	5.3%	P46A (CCG→GCG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,865	T→A	5.3%	Q45L (CAG→CTG)	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,867	G→C	5.2%	H44Q (CAC→CAG) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,700,868	T→C	5.3%	H44R (CAC→CGC) ‡	acpS ←	holo‑[acyl‑carrier‑protein] synthase
RA	2,703,331	A→T	6.4%	V19D (GTT→GAT)	era ←	30S ribosomal subunit maturation GTPase Era
RA	2,703,334	Δ1 bp	6.1%	coding (53/906 nt)	era ←	30S ribosomal subunit maturation GTPase Era
RA	2,703,345:1	+A	5.2%	coding (42/906 nt)	era ←	30S ribosomal subunit maturation GTPase Era
RA	2,703,349	A→T	5.4%	I13N (ATC→AAC)	era ←	30S ribosomal subunit maturation GTPase Era
RA	2,704,304	A→G	5.8%	intergenic (‑241/+31)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,704,306	A→T	6.3%	intergenic (‑243/+29)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,704,308	C→T	5.8%	intergenic (‑245/+27)	rnc ← / ← lepB	RNase III/signal peptidase I
RA	2,704,878	G→T	6.5%	Y144* (TAC→TAA) ‡	lepB ←	signal peptidase I
RA	2,704,879	T→A	6.5%	Y144F (TAC→TTC) ‡	lepB ←	signal peptidase I
RA	2,704,880	A→C	6.7%	Y144D (TAC→GAC) ‡	lepB ←	signal peptidase I
RA	2,707,320	A→T	8.6%	intergenic (‑196/+2)	lepA ← / ← rseC	elongation factor 4/protein RseC
RA	2,707,321	A→T	8.4%	intergenic (‑197/+1)	lepA ← / ← rseC	elongation factor 4/protein RseC
RA	2,712,128	C→G	7.8%	A213P (GCG→CCG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,130	T→A	6.7%	Q212L (CAG→CTG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,133	G→C	7.1%	P211R (CCG→CGG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,714,358	A→G	5.6%	intergenic (+128/+81)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,714,359	A→C	5.7%	intergenic (+129/+80)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,714,365	T→G	5.6%	intergenic (+135/+74)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,714,366	C→A	5.5%	intergenic (+136/+73)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,714,372	G→T	6.7%	intergenic (+142/+67)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,714,373	C→T	6.5%	intergenic (+143/+66)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,715,258	A→G	6.7%	A21A (GCT→GCC) ‡	yfiE ←	putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,715,259	G→C	6.5%	A21G (GCT→GGT) ‡	yfiE ←	putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,715,260	C→T	6.7%	A21T (GCT→ACT) ‡	yfiE ←	putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,716,030	T→G	8.9%	intergenic (+20/+36)	eamB → / ← grcA	cysteine/O‑acetylserine exporter EamB/stress‑induced alternate pyruvate formate‑lyase subunit
RA	2,716,033	C→A	7.5%	intergenic (+23/+33)	eamB → / ← grcA	cysteine/O‑acetylserine exporter EamB/stress‑induced alternate pyruvate formate‑lyase subunit
RA	2,724,095	C→A	5.2%	intergenic (+13/‑33)	pssA → / → yfiM	phosphatidylserine synthase/protein YfiM
RA	2,724,099	T→G	5.0%	intergenic (+17/‑29)	pssA → / → yfiM	phosphatidylserine synthase/protein YfiM
RA	2,724,412	A→T	7.7%	A95A (GCA→GCT)	yfiM →	protein YfiM
RA	2,724,413	A→T	7.6%	S96C (AGC→TGC)	yfiM →	protein YfiM
RA	2,731,073	A→T	6.4%	noncoding (85/1542 nt)	rrsG ←	16S ribosomal RNA
RA	2,731,074	A→T	6.3%	noncoding (84/1542 nt)	rrsG ←	16S ribosomal RNA
RA	2,735,761	A→C	6.1%	L84R (CTG→CGG)	rluD ←	23S rRNA pseudouridine(1911/1915/1917) synthase
RA	2,735,764	G→T	6.2%	P83Q (CCG→CAG)	rluD ←	23S rRNA pseudouridine(1911/1915/1917) synthase
RA	2,736,911	C→T	5.6%	intergenic (+28/‑243)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,913	T→A	6.1%	intergenic (+30/‑241)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,914	T→A	6.1%	intergenic (+31/‑240)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,736,916	A→G	6.1%	intergenic (+33/‑238)	bamD → / → raiA	outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
RA	2,737,703	A→G	5.2%	intergenic (+57/‑42)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,705	A→T	5.5%	intergenic (+59/‑40)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,707	C→T	6.3%	intergenic (+61/‑38)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,737,711	G→A	5.5%	intergenic (+65/‑34)	pheL → / → pheA	phe operon leader peptide/fused chorismate mutase/prephenate dehydratase
RA	2,738,925	G→T	7.2%	intergenic (+20/+23)	pheA → / ← tyrA	fused chorismate mutase/prephenate dehydratase/fused chorismate mutase/prephenate dehydrogenase
RA	2,738,926	T→C	6.9%	intergenic (+21/+22)	pheA → / ← tyrA	fused chorismate mutase/prephenate dehydratase/fused chorismate mutase/prephenate dehydrogenase
RA	2,738,927	G→A	6.9%	intergenic (+22/+21)	pheA → / ← tyrA	fused chorismate mutase/prephenate dehydratase/fused chorismate mutase/prephenate dehydrogenase
RA	2,738,928	A→C	6.7%	intergenic (+23/+20)	pheA → / ← tyrA	fused chorismate mutase/prephenate dehydratase/fused chorismate mutase/prephenate dehydrogenase
RA	2,742,794	G→T	5.2%	E138* (GAA→TAA) ‡	dgcN →	diguanylate cyclase DgcN
RA	2,742,795	A→T	5.1%	E138V (GAA→GTA) ‡	dgcN →	diguanylate cyclase DgcN
RA	2,742,796	A→C	5.3%	E138D (GAA→GAC) ‡	dgcN →	diguanylate cyclase DgcN
RA	2,744,135	C→T	5.3%	intergenic (+28/+48)	yfiB → / ← rplS	lipoprotein YfiB/50S ribosomal subunit protein L19
RA	2,750,073	G→T	5.8%	intergenic (+13/+42)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,078	T→G	5.8%	intergenic (+18/+37)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,081	C→A	5.8%	intergenic (+21/+34)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,750,086	A→C	5.9%	intergenic (+26/+29)	yfjD → / ← grpE	putative inner membrane protein/nucleotide exchange factor GrpE
RA	2,758,920	C→T	6.1%	intergenic (+64/‑65)	alpA → / → yfjI	CP4‑57 prophage; DNA‑binding transcriptional activator AlpA/CP4‑57 prophage; protein YfjI
RA	2,758,927	A→G	7.6%	intergenic (+71/‑58)	alpA → / → yfjI	CP4‑57 prophage; DNA‑binding transcriptional activator AlpA/CP4‑57 prophage; protein YfjI
RA	2,761,620	T→G	5.8%	K641Q (AAG→CAG)	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,761,623	C→A	6.1%	V640L (GTA→TTA)	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,768,609	T→C	8.6%	intergenic (+36/‑56)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,614	A→C	8.3%	intergenic (+41/‑51)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,615	G→T	8.4%	intergenic (+42/‑50)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,620	G→A	8.2%	intergenic (+47/‑45)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,770,309	G→A	5.6%	V203I (GTT→ATT) ‡	yfjR →	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA	2,770,310	T→A	5.7%	V203D (GTT→GAT) ‡	yfjR →	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA	2,770,319	C→G	7.6%	P206R (CCG→CGG)	yfjR →	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA	2,770,328	T→A	6.1%	I209N (ATT→AAT) ‡	yfjR →	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA	2,770,329	T→C	6.1%	I209I (ATT→ATC) ‡	yfjR →	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
RA	2,775,085	T→C	6.6%	intergenic (+64/‑460)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,089	T→A	6.6%	intergenic (+68/‑456)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,093	G→A	6.5%	intergenic (+72/‑452)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,502	T→C	5.3%	intergenic (+481/‑43)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,503	C→T	5.2%	intergenic (+482/‑42)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,504	A→G	5.1%	intergenic (+483/‑41)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,775,505	G→A	5.2%	intergenic (+484/‑40)	yfjW → / → ypjI	CP4‑57 prophage; uncharacterized protein YfjW/putative UPF0401 protein YpjI
RA	2,777,571	A→G	8.8%	D40G (GAC→GGC)	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,573	A→G	8.8%	T41A (ACG→GCG) ‡	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,574	C→T	8.6%	T41M (ACG→ATG) ‡	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,777,576	C→T	8.7%	P42S (CCG→TCG)	ypjF →	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA	2,778,123	G→T	6.8%	intergenic (+341/+23)	ypjF → / ← ypjA	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA
RA	2,778,124	A→C	6.5%	intergenic (+342/+22)	ypjF → / ← ypjA	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA
RA	2,788,671	A→T	6.6%	intergenic (+22/‑314)	ygaQ → / → csiD	putative uncharacterized protein YgaQ/PF08943 family protein CsiD
RA	2,788,673	A→T	7.2%	intergenic (+24/‑312)	ygaQ → / → csiD	putative uncharacterized protein YgaQ/PF08943 family protein CsiD
RA	2,788,674	A→T	7.0%	intergenic (+25/‑311)	ygaQ → / → csiD	putative uncharacterized protein YgaQ/PF08943 family protein CsiD
RA	2,788,676	A→T	7.2%	intergenic (+27/‑309)	ygaQ → / → csiD	putative uncharacterized protein YgaQ/PF08943 family protein CsiD
RA	2,802,651	T→C	8.4%	V435A (GTA→GCA)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,654	A→T	8.6%	E436V (GAG→GTG) ‡	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,655	G→C	8.6%	E436D (GAG→GAC) ‡	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,656	A→T	8.6%	T437S (ACT→TCT)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,802,659	G→A	8.3%	A438T (GCC→ACC)	nrdE →	ribonucleoside‑diphosphate reductase 2 subunit alpha
RA	2,804,528	C→A	12.6%	intergenic (+67/‑287)	nrdF → / → proV	ribonucleoside‑diphosphate reductase 2 subunit beta/glycine betaine ABC transporter ATP binding subunit ProV
RA	2,810,872	C→T	14.7%	H35Y (CAC→TAC) ‡	mprA →	DNA‑binding transcriptional repressor MprA
RA	2,810,873	A→G	14.7%	H35R (CAC→CGC) ‡	mprA →	DNA‑binding transcriptional repressor MprA
RA	2,814,174	T→A	11.4%	intergenic (+20/+44)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,814,175	T→A	11.5%	intergenic (+21/+43)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,817,445	T→A	5.2%	E20V (GAG→GTG)	yqaB ←	fructose‑1‑phosphatase
RA	2,822,673	C→T	5.5%	intergenic (‑34/+35)	recX ← / ← recA	RecA inhibitor RecX/DNA recombination/repair protein RecA
RA	2,823,838	C→A	5.2%	intergenic (‑69/+11)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,823,839	T→G	5.4%	intergenic (‑70/+10)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,838,222	A→T	8.2%	intergenic (‑117/+32)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,838,231	A→T	6.1%	intergenic (‑126/+23)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,839,321	C→G	9.0%	intergenic (‑57/‑203)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,323	T→A	8.5%	intergenic (‑59/‑201)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,324	T→A	8.4%	intergenic (‑60/‑200)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,839,326	C→G	8.2%	intergenic (‑62/‑198)	ascG ← / → ascF	DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component
RA	2,845,789	A→G	6.6%	M228T (ATG→ACG)	hycE ←	formate hydrogenlyase subunit HycE
RA	2,845,792	C→T	6.6%	R227H (CGT→CAT)	hycE ←	formate hydrogenlyase subunit HycE
RA	2,856,257	G→C	5.5%	L640L (CTG→CTC)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,856,258	G→C	5.7%	E641Q (GAG→CAG)	fhlA →	DNA‑binding transcriptional activator FhlA
RA	2,859,332	T→G	6.5%	L747R (CTC→CGC) ‡	mutS →	DNA mismatch repair protein MutS
RA	2,859,333	C→A	6.7%	L747L (CTC→CTA) ‡	mutS →	DNA mismatch repair protein MutS
RA	2,860,736	C→G	8.9%	D167H (GAT→CAT)	ygbI ←	putative DeoR‑type DNA‑binding transcriptional regulator YgbI
RA	2,860,738	A→T	8.6%	I166N (ATT→AAT)	ygbI ←	putative DeoR‑type DNA‑binding transcriptional regulator YgbI
RA	2,860,740	C→G	9.6%	M165I (ATG→ATC)	ygbI ←	putative DeoR‑type DNA‑binding transcriptional regulator YgbI
RA	2,884,577	T→C	5.2%	R881R (AGA→AGG) ‡	cas3 ←	CRISPR‑associated endonuclease/helicase Cas3
RA	2,884,579	T→G	5.2%	R881R (AGA→CGA) ‡	cas3 ←	CRISPR‑associated endonuclease/helicase Cas3
RA	2,884,580	G→A	5.4%	T880T (ACC→ACT)	cas3 ←	CRISPR‑associated endonuclease/helicase Cas3
RA	2,892,550	A→G	10.0%	T113A (ACC→GCC) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,892,551	C→G	10.1%	T113S (ACC→AGC) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,892,552	C→T	10.1%	T113T (ACC→ACT) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,894,845	G→A	5.2%	intergenic (+74/+74)	ygcP → / ← ygcQ	putative anti‑terminator regulatory protein/putative flavoprotein
RA	2,894,846	C→A	5.1%	intergenic (+75/+73)	ygcP → / ← ygcQ	putative anti‑terminator regulatory protein/putative flavoprotein
RA	2,894,852	T→G	5.3%	intergenic (+81/+67)	ygcP → / ← ygcQ	putative anti‑terminator regulatory protein/putative flavoprotein
RA	2,894,862	T→G	5.9%	intergenic (+91/+57)	ygcP → / ← ygcQ	putative anti‑terminator regulatory protein/putative flavoprotein
RA	2,894,863	T→C	5.9%	intergenic (+92/+56)	ygcP → / ← ygcQ	putative anti‑terminator regulatory protein/putative flavoprotein
RA	2,897,910	G→A	6.0%	intergenic (‑40/+54)	ygcS ← / ← ygcU	putative transporter YgcS/putative FAD‑containing dehydrogenase
RA	2,897,911	C→G	6.4%	intergenic (‑41/+53)	ygcS ← / ← ygcU	putative transporter YgcS/putative FAD‑containing dehydrogenase
RA	2,897,912	C→G	6.0%	intergenic (‑42/+52)	ygcS ← / ← ygcU	putative transporter YgcS/putative FAD‑containing dehydrogenase
RA	2,897,913	T→C	6.4%	intergenic (‑43/+51)	ygcS ← / ← ygcU	putative transporter YgcS/putative FAD‑containing dehydrogenase
RA	2,900,322	C→T	6.0%	intergenic (‑49/‑270)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,900,324	G→T	5.7%	intergenic (‑51/‑268)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,900,327	A→C	6.1%	intergenic (‑54/‑265)	ygcW ← / → yqcE	putative deoxygluconate dehydrogenase/putative transport protein YqcE
RA	2,906,607	C→T	6.8%	intergenic (+24/+36)	ygcG → / ← eno	protein YgcG/enolase
RA	2,906,608	G→C	6.1%	intergenic (+25/+35)	ygcG → / ← eno	protein YgcG/enolase
RA	2,906,609	G→C	6.1%	intergenic (+26/+34)	ygcG → / ← eno	protein YgcG/enolase
RA	2,907,998	A→T	5.1%	intergenic (‑57/+31)	eno ← / ← pyrG	enolase/CTP synthetase
RA	2,908,486	G→C	8.7%	A394G (GCC→GGC)	pyrG ←	CTP synthetase
RA	2,911,007	G→A	7.1%	R29C (CGT→TGT)	mazF ←	endoribonuclease toxin MazF
RA	2,911,008	A→T	7.1%	H28Q (CAT→CAA) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,911,009	T→C	7.6%	H28R (CAT→CGT) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,921,851	A→G	5.4%	S84P (TCA→CCA)	gudP ←	galactarate/glucarate/glycerate transporter GudP
RA	2,921,852	A→T	6.0%	G83G (GGT→GGA) ‡	gudP ←	galactarate/glucarate/glycerate transporter GudP
RA	2,921,853	C→T	5.4%	G83D (GGT→GAT) ‡	gudP ←	galactarate/glucarate/glycerate transporter GudP
RA	2,923,969	C→G	10.3%	E49Q (GAG→CAG)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,923,970	C→G	10.3%	L48L (CTG→CTC)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,923,978	C→G	9.6%	E46Q (GAA→CAA)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,931,827	C→A	5.3%	intergenic (+17/+38)	ygdG → / ← fucO	flap endonuclease/L‑1,2‑propanediol oxidoreductase
RA	2,931,830	C→T	5.3%	intergenic (+20/+35)	ygdG → / ← fucO	flap endonuclease/L‑1,2‑propanediol oxidoreductase
RA	2,931,832	A→T	5.0%	intergenic (+22/+33)	ygdG → / ← fucO	flap endonuclease/L‑1,2‑propanediol oxidoreductase
RA	2,931,833	A→G	5.0%	intergenic (+23/+32)	ygdG → / ← fucO	flap endonuclease/L‑1,2‑propanediol oxidoreductase
RA	2,931,836	T→G	6.2%	intergenic (+26/+29)	ygdG → / ← fucO	flap endonuclease/L‑1,2‑propanediol oxidoreductase
RA	2,933,398	A→T	5.2%	H97Q (CAT→CAA)	fucA ←	L‑fuculose‑phosphate aldolase
RA	2,936,359	T→A	6.8%	V259D (GTT→GAT) ‡	fucI →	L‑fucose isomerase
RA	2,936,360	T→A	6.7%	V259V (GTT→GTA) ‡	fucI →	L‑fucose isomerase
RA	2,939,331	A→G	8.3%	intergenic (+21/‑37)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,333	G→C	8.4%	intergenic (+23/‑35)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,335	C→T	8.6%	intergenic (+25/‑33)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,945,005	A→G	9.6%	intergenic (+20/+31)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,945,011	T→C	9.9%	intergenic (+26/+25)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,945,012	T→G	9.7%	intergenic (+27/+24)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,945,013	C→A	9.8%	intergenic (+28/+23)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,945,014	G→A	9.8%	intergenic (+29/+22)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,945,020	C→T	8.9%	intergenic (+35/+16)	csdE → / ← tcdA	sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase
RA	2,960,926	G→C	6.8%	G501G (GGC→GGG) ‡	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,960,928	C→G	6.8%	G501R (GGC→CGC) ‡	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,960,930	G→C	6.5%	S500C (TCC→TGC)	recC ←	exodeoxyribonuclease V subunit RecC
RA	2,971,146	T→C	10.3%	intergenic (+13/‑125)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,151	T→C	9.8%	intergenic (+18/‑120)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,154	G→A	9.6%	intergenic (+21/‑117)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,159	G→A	10.2%	intergenic (+26/‑112)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,976,320	T→G	10.2%	noncoding (66/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,976,321	C→A	12.4%	noncoding (65/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,980,742	A→G	5.9%	intergenic (‑107/+22)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,744	A→T	6.1%	intergenic (‑109/+20)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,746	C→T	6.3%	intergenic (‑111/+18)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,987,103	C→T	5.1%	intergenic (+27/‑433)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,987,104	T→A	5.8%	intergenic (+28/‑432)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,987,105	A→G	5.2%	intergenic (+29/‑431)	yqeG → / → yqeH	putative transporter YqeG/putative LuxR family transcriptional regulator YqeH
RA	2,993,889	T→A	8.4%	intergenic (+33/‑50)	ygeI → / → pbl	protein YgeI/transglycosylase domain‑containing protein Pbl
RA	2,993,896	T→A	10.2%	intergenic (+40/‑43)	ygeI → / → pbl	protein YgeI/transglycosylase domain‑containing protein Pbl
RA	3,007,466	T→C	5.8%	intergenic (+14/‑44)	ygeW → / → ygeX	putative carbamoyltransferase YgeW/2,3‑diaminopropionate ammonia‑lyase
RA	3,007,473	G→A	5.3%	intergenic (+21/‑37)	ygeW → / → ygeX	putative carbamoyltransferase YgeW/2,3‑diaminopropionate ammonia‑lyase
RA	3,012,471	G→T	5.2%	intergenic (+78/+143)	yqeA → / ← yqeB	putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB
RA	3,012,472	A→C	5.1%	intergenic (+79/+142)	yqeA → / ← yqeB	putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB
RA	3,012,478	T→G	5.1%	intergenic (+85/+136)	yqeA → / ← yqeB	putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB
RA	3,012,479	T→C	5.2%	intergenic (+86/+135)	yqeA → / ← yqeB	putative amino acid kinase YqeA/XdhC‑CoxI family protein YqeB
RA	3,020,510	G→T	7.7%	intergenic (+21/‑30)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,020,511	C→G	7.8%	intergenic (+22/‑29)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,020,512	A→C	7.9%	intergenic (+23/‑28)	ssnA → / → ygfM	putative aminohydrolase/putative oxidoreductase
RA	3,021,915	C→A	5.4%	A200A (GCC→GCA)	xdhD →	fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit
RA	3,021,916	T→G	5.3%	C201G (TGC→GGC)	xdhD →	fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit
RA	3,031,221	T→A	6.6%	intergenic (‑290/‑146)	ygfT ← / → uacT	fused putative oxidoreductase, Fe‑S subunit and nucleotide‑binding subunit/urate:H(+) symporter
RA	3,033,624	A→G	5.4%	intergenic (+11/+33)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,627	T→A	5.4%	intergenic (+14/+30)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,628	T→A	5.7%	intergenic (+15/+29)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,033,631	C→T	5.3%	intergenic (+18/+26)	idi → / ← lysS	isopentenyl‑diphosphate Delta‑isomerase/lysine‑‑tRNA ligase, constitutive
RA	3,041,634	A→C	91.5%	T108P (ACC→CCC)	ygfZ →	folate‑binding protein
RA	3,044,327	C→G	5.7%	S222R (AGC→AGG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,044,330	C→G	5.7%	A223A (GCC→GCG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,044,530	G→T	6.6%	R290L (CGC→CTC)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,045,124	T→C	6.8%	intergenic (+23/+34)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,126	C→A	7.3%	intergenic (+25/+32)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,127	T→G	7.3%	intergenic (+26/+31)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,045,129	G→A	7.2%	intergenic (+28/+29)	bglA → / ← ygfF	6‑phospho‑beta‑glucosidase A/putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
RA	3,052,886	C→G	5.4%	A211A (GCG→GCC)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,890	A→C	5.4%	L210R (CTG→CGG)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,893	G→T	5.6%	P209Q (CCG→CAG)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,052,897	C→G	5.3%	G208R (GGC→CGC)	ubiH ←	2‑octaprenyl‑6‑methoxyphenol hydroxylase
RA	3,058,651	G→A	6.2%	intergenic (‑241/+15)	serA ← / ← rpiA	phosphoglycerate dehydrogenase/ribose‑5‑phosphate isomerase A
RA	3,058,652	G→C	6.1%	intergenic (‑242/+14)	serA ← / ← rpiA	phosphoglycerate dehydrogenase/ribose‑5‑phosphate isomerase A
RA	3,058,653	T→C	6.4%	intergenic (‑243/+13)	serA ← / ← rpiA	phosphoglycerate dehydrogenase/ribose‑5‑phosphate isomerase A
RA	3,066,293	T→C	8.9%	D294G (GAC→GGC)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,299:1	+G	11.1%	coding (875/897 nt)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,308	A→T	12.7%	I289N (ATT→AAT) ‡	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,309	T→A	12.6%	I289F (ATT→TTT) ‡	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,310	A→T	12.6%	H288Q (CAT→CAA)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,319	Δ1 bp	8.4%	coding (855/897 nt)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,066,326	G→A	6.1%	A283V (GCC→GTC)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,067,320	A→T	7.7%	intergenic (‑147/+20)	ygfI ← / ← yggE	putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE
RA	3,067,323	A→T	7.8%	intergenic (‑150/+17)	ygfI ← / ← yggE	putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE
RA	3,068,922	G→T	7.4%	intergenic (‑114/+25)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,924	G→A	7.0%	intergenic (‑116/+23)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,927	T→C	7.0%	intergenic (‑119/+20)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,068,929	A→C	7.0%	intergenic (‑121/+18)	argO ← / ← mscS	L‑arginine exporter/small conductance mechanosensitive channel MscS
RA	3,072,800	C→T	5.0%	D298N (GAT→AAT)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,072,804	A→G	5.0%	I296I (ATT→ATC)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,084,162	C→G	5.1%	A584P (GCG→CCG)	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,169	A→G	5.4%	D581D (GAT→GAC) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,170	T→A	5.1%	D581V (GAT→GTT) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,171	C→T	5.4%	D581N (GAT→AAT) ‡	speA ←	arginine decarboxylase, biosynthetic
RA	3,084,178	C→G	5.9%	L578L (CTG→CTC)	speA ←	arginine decarboxylase, biosynthetic
RA	3,090,226	T→C	5.2%	C158R (TGC→CGC)	yggI →	conserved protein YggI
RA	3,090,229	G→A	5.3%	G159S (GGT→AGT)	yggI →	conserved protein YggI
RA	3,092,774:1	+A	10.5%	coding (897/951 nt)	gshB →	glutathione synthetase
RA	3,092,779	Δ1 bp	10.1%	coding (902/951 nt)	gshB →	glutathione synthetase
RA	3,098,515	G→C	5.1%	intergenic (+112/+43)	yggW → / ← yggM	putative coproporphyrinogen‑III oxidase‑like protein YggW/DUF1202 domain‑containing protein YggM
RA	3,100,874	A→T	8.3%	intergenic (‑146/+30)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,876	A→C	8.3%	intergenic (‑148/+28)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,877	A→T	8.4%	intergenic (‑149/+27)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,878	G→T	8.1%	intergenic (‑150/+26)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,880	A→T	8.5%	intergenic (‑152/+24)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,111,823	C→T	5.9%	pseudogene (166/861 nt)	yghE ←	putative type II secretion system L‑type protein
RA	3,119,571	A→C	8.7%	intergenic (‑459/+26)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,572	T→G	8.9%	intergenic (‑460/+25)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,574	A→T	8.6%	intergenic (‑462/+23)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,576	C→A	8.4%	intergenic (‑464/+21)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,119,577	G→T	8.5%	intergenic (‑465/+20)	yghJ ← / ← glcA	putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA
RA	3,125,395	A→T	6.7%	L22Q (CTG→CAG)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,125,399	T→A	6.9%	I21F (ATC→TTC)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,125,404	T→A	7.0%	D19V (GAC→GTC)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,125,406	G→A	6.7%	A18A (GCC→GCT)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,125,409	T→A	6.5%	E17D (GAA→GAT)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,125,413	A→T	6.5%	L16Q (CTG→CAG)	glcF ←	glycolate dehydrogenase, putative iron‑sulfur subunit
RA	3,135,356	T→C	7.3%	Q339R (CAG→CGG) ‡	pitB ←	metal phosphate:H(+) symporter PitB
RA	3,135,357	G→A	7.3%	Q339* (CAG→TAG) ‡	pitB ←	metal phosphate:H(+) symporter PitB
RA	3,136,628	T→G	5.6%	intergenic (‑257/+35)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,629	C→A	5.5%	intergenic (‑258/+34)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,630	T→A	5.5%	intergenic (‑259/+33)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,631	T→G	5.4%	intergenic (‑260/+32)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,136,632	C→A	5.6%	intergenic (‑261/+31)	pitB ← / ← gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
RA	3,139,632	A→G	8.7%	intergenic (+39/+84)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,633	A→C	8.6%	intergenic (+40/+83)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,639	T→G	8.1%	intergenic (+46/+77)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,640	C→A	7.0%	intergenic (+47/+76)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,646	G→T	7.5%	intergenic (+53/+70)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,139,647	C→T	8.2%	intergenic (+54/+69)	yghU → / ← hybG	disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein
RA	3,140,353	A→G	5.0%	R149R (CGT→CGC)	hybE ←	hydrogenase 2‑specific chaperone
RA	3,140,859	T→G	8.7%	E143A (GAG→GCG)	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,861	A→T	8.6%	L142L (CTT→CTA) ‡	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,862	A→T	8.7%	L142H (CTT→CAT) ‡	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,864	C→A	8.9%	A141A (GCG→GCT)	hybD ←	putative hydrogenase 2 maturation protease
RA	3,152,551	A→G	5.6%	M106V (ATG→GTG) ‡	metC →	cystathionine beta‑lyase/L‑cysteine desulfhydrase
RA	3,152,553	G→C	5.6%	M106I (ATG→ATC) ‡	metC →	cystathionine beta‑lyase/L‑cysteine desulfhydrase
RA	3,152,555	C→T	5.3%	T107I (ACC→ATC)	metC →	cystathionine beta‑lyase/L‑cysteine desulfhydrase
RA	3,155,227	C→A	6.2%	intergenic (‑9/‑128)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,228	A→G	6.3%	intergenic (‑10/‑127)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,229	C→T	5.8%	intergenic (‑11/‑126)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,230	T→G	6.5%	intergenic (‑12/‑125)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,156,590	C→A	10.2%	intergenic (+72/‑33)	yqhD → / → dkgA	NADPH‑dependent aldehyde reductase YqhD/methylglyoxal reductase DkgA
RA	3,156,591	T→G	10.2%	intergenic (+73/‑32)	yqhD → / → dkgA	NADPH‑dependent aldehyde reductase YqhD/methylglyoxal reductase DkgA
RA	3,161,237	T→G	6.3%	intergenic (‑91/+20)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,238	C→A	5.8%	intergenic (‑92/+19)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,239	C→G	6.3%	intergenic (‑93/+18)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,240	T→G	6.8%	intergenic (‑94/+17)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,161,241	C→A	6.1%	intergenic (‑95/+16)	ygiQ ← / ← ftsP	radical SAM superfamily protein YgiQ/cell division protein required during stress conditions
RA	3,165,154	T→A	6.6%	M274L (ATG→TTG)	parC ←	DNA topoisomerase IV subunit A
RA	3,165,155	T→A	5.8%	Q273H (CAA→CAT)	parC ←	DNA topoisomerase IV subunit A
RA	3,171,852	C→T	8.2%	intergenic (+19/+27)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,857	A→T	8.4%	intergenic (+24/+22)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,858	A→T	8.4%	intergenic (+25/+21)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,863	A→G	8.5%	intergenic (+30/+16)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,180,505	G→T	7.7%	E29* (GAG→TAG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,506	A→C	8.8%	E29A (GAG→GCG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,513:1	+A	5.5%	coding (93/1161 nt)	ygiC →	putative enzyme with ATPase activity
RA	3,181,600	A→G	7.5%	intergenic (+19/+19)	ygiC → / ← ygiD	putative enzyme with ATPase activity/4,5‑DOPA dioxygenase extradiol
RA	3,181,601	C→A	7.8%	intergenic (+20/+18)	ygiC → / ← ygiD	putative enzyme with ATPase activity/4,5‑DOPA dioxygenase extradiol
RA	3,181,602	T→G	7.4%	intergenic (+21/+17)	ygiC → / ← ygiD	putative enzyme with ATPase activity/4,5‑DOPA dioxygenase extradiol
RA	3,181,603	C→T	7.3%	intergenic (+22/+16)	ygiC → / ← ygiD	putative enzyme with ATPase activity/4,5‑DOPA dioxygenase extradiol
RA	3,182,803	T→G	5.8%	L85W (TTG→TGG)	zupT →	heavy metal divalent cation transporter ZupT
RA	3,182,806	C→A	6.0%	P86Q (CCA→CAA)	zupT →	heavy metal divalent cation transporter ZupT
RA	3,183,345:1	+T	8.1%	intergenic (+22/+36)	zupT → / ← yqiD	heavy metal divalent cation transporter ZupT/protein YqiD
RA	3,183,350	Δ1 bp	7.8%	intergenic (+27/+31)	zupT → / ← yqiD	heavy metal divalent cation transporter ZupT/protein YqiD
RA	3,187,989	A→G	5.5%	pseudogene (558/2434 nt)	yqiG →	putative outer membrane usher protein YqiG
RA	3,187,991	T→A	5.6%	pseudogene (560/2434 nt)	yqiG →	putative outer membrane usher protein YqiG
RA	3,187,993	C→T	5.7%	pseudogene (562/2434 nt)	yqiG →	putative outer membrane usher protein YqiG
RA	3,202,678	C→G	11.4%	P263R (CCG→CGG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,685	A→G	12.6%	E265E (GAA→GAG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,686	C→T	12.7%	L266F (CTC→TTC)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,693	C→G	11.6%	P268R (CCG→CGG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,212,983	G→A	7.7%	intergenic (+131/‑64)	dnaG → / → rpoD	DNA primase/RNA polymerase, sigma 70 (sigma D) factor
RA	3,215,694	G→T	8.1%	intergenic (+21/+33)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,695	A→T	8.2%	intergenic (+22/+32)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,696	A→T	8.0%	intergenic (+23/+31)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,697	A→C	8.0%	intergenic (+24/+30)	ileX → / ← nfeF	tRNA‑Ile/NADPH‑dependent ferric chelate reductase
RA	3,215,989	G→C	5.3%	P168R (CCG→CGG)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,215,993	T→A	6.1%	K167* (AAA→TAA)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,215,997	G→C	6.7%	A165A (GCC→GCG)	nfeF ←	NADPH‑dependent ferric chelate reductase
RA	3,216,659	G→T	5.8%	intergenic (‑168/‑120)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,660	A→C	5.8%	intergenic (‑169/‑119)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,666	T→G	6.5%	intergenic (‑175/‑113)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,216,667	T→C	6.0%	intergenic (‑176/‑112)	nfeF ← / → nfeR	NADPH‑dependent ferric chelate reductase/DNA‑binding transcriptional repressor NfeR
RA	3,233,708	A→G	6.5%	intergenic (+25/+20)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,233,709	A→T	6.3%	intergenic (+26/+19)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,233,710	C→T	6.5%	intergenic (+27/+18)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,234,506	G→A	6.2%	intergenic (‑51/+233)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,507	A→T	6.2%	intergenic (‑52/+232)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,508	T→C	6.2%	intergenic (‑53/+231)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,241,781	C→T	8.4%	intergenic (‑37/+46)	ygjV ← / ← uxaA	inner membrane protein/D‑altronate dehydratase
RA	3,241,786	C→T	9.2%	intergenic (‑42/+41)	ygjV ← / ← uxaA	inner membrane protein/D‑altronate dehydratase
RA	3,241,788	T→A	8.3%	intergenic (‑44/+39)	ygjV ← / ← uxaA	inner membrane protein/D‑altronate dehydratase
RA	3,241,790	A→G	8.1%	intergenic (‑46/+37)	ygjV ← / ← uxaA	inner membrane protein/D‑altronate dehydratase
RA	3,241,795	A→G	8.4%	intergenic (‑51/+32)	ygjV ← / ← uxaA	inner membrane protein/D‑altronate dehydratase
RA	3,247,836	Δ1 bp	5.6%	coding (64/663 nt)	yqjA →	DedA family protein YqjA
RA	3,247,843:1	+G	5.9%	coding (71/663 nt)	yqjA →	DedA family protein YqjA
RA	3,250,989	G→C	7.5%	intergenic (+35/‑35)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,990	A→T	7.3%	intergenic (+36/‑34)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,991	A→T	7.2%	intergenic (+37/‑33)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,250,992	G→C	7.3%	intergenic (+38/‑32)	yqjF → / → yqjG	DoxX family protein/glutathionyl‑hydroquinone reductase YqjG
RA	3,259,122	T→G	6.3%	E176D (GAA→GAC) ‡	tdcG ←	L‑serine deaminase III
RA	3,259,124	C→G	6.4%	E176Q (GAA→CAA) ‡	tdcG ←	L‑serine deaminase III
RA	3,259,126	C→A	6.8%	G175V (GGT→GTT)	tdcG ←	L‑serine deaminase III
RA	3,270,030	T→C	13.8%	intergenic (+428/+186)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,270,182	C→T	6.6%	intergenic (+580/+34)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,270,195	A→C	11.7%	intergenic (+593/+21)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,282,927	A→G	7.7%	I318V (ATC→GTC) ‡	agaS →	putative galactosamine‑6‑phosphate deaminase/isomerase
RA	3,282,928	T→A	7.3%	I318N (ATC→AAC) ‡	agaS →	putative galactosamine‑6‑phosphate deaminase/isomerase
RA	3,282,929	C→T	7.3%	I318I (ATC→ATT) ‡	agaS →	putative galactosamine‑6‑phosphate deaminase/isomerase
RA	3,291,109	A→T	5.7%	K766* (AAA→TAA) ‡	yraJ →	putative fimbrial usher protein YraJ
RA	3,291,110	A→T	6.3%	K766I (AAA→ATA) ‡	yraJ →	putative fimbrial usher protein YraJ
RA	3,305,913	G→T	6.8%	intergenic (‑96/+58)	mtr ← / ← deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
RA	3,305,914	G→T	6.5%	intergenic (‑97/+57)	mtr ← / ← deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
RA	3,305,916	A→T	6.3%	intergenic (‑99/+55)	mtr ← / ← deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
RA	3,305,918	A→C	6.4%	intergenic (‑101/+53)	mtr ← / ← deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
RA	3,305,919	A→C	6.4%	intergenic (‑102/+52)	mtr ← / ← deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
RA	3,309,009	C→T	5.1%	intergenic (‑85/+24)	nlpI ← / ← pnp	lipoprotein NlpI/polynucleotide phosphorylase
RA	3,309,012	A→G	5.6%	intergenic (‑88/+21)	nlpI ← / ← pnp	lipoprotein NlpI/polynucleotide phosphorylase
RA	3,313,207	G→A	7.9%	intergenic (‑29/+135)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,208	T→A	7.9%	intergenic (‑30/+134)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,209	T→C	8.0%	intergenic (‑31/+133)	rbfA ← / ← infB	30S ribosome binding factor/translation initiation factor IF‑2
RA	3,313,756	A→T	5.9%	S753S (TCT→TCA)	infB ←	translation initiation factor IF‑2
RA	3,313,759	G→T	6.2%	A752A (GCC→GCA)	infB ←	translation initiation factor IF‑2
RA	3,313,762	A→C	5.4%	D751E (GAT→GAG)	infB ←	translation initiation factor IF‑2
RA	3,313,765	A→T	5.4%	A750A (GCT→GCA)	infB ←	translation initiation factor IF‑2
RA	3,322,040	A→G	5.5%	intergenic (‑427/+32)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,048	T→G	5.6%	intergenic (‑435/+24)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,049	T→A	5.6%	intergenic (‑436/+23)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,050	T→A	5.6%	intergenic (‑437/+22)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,051	C→A	5.5%	intergenic (‑438/+21)	yhbX ← / ← leuU	putative hydrolase, inner membrane/tRNA‑Leu
RA	3,322,705	C→T	5.2%	intergenic (‑200/+28)	secG ← / ← glmM	Sec translocon subunit SecG/phosphoglucosamine mutase
RA	3,324,952	A→G	5.4%	intergenic (‑41/+49)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,955	A→G	5.5%	intergenic (‑44/+46)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,956	C→T	6.2%	intergenic (‑45/+45)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,324,959	C→T	5.6%	intergenic (‑48/+42)	folP ← / ← ftsH	dihydropteroate synthase/ATP‑dependent zinc metalloprotease FtsH
RA	3,328,182	A→T	9.1%	intergenic (+99/+57)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,328,183	T→A	8.9%	intergenic (+100/+56)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,328,184	A→T	8.6%	intergenic (+101/+55)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,332,822	G→A	6.6%	intergenic (‑87/+40)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,332,823	T→C	6.7%	intergenic (‑88/+39)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,334,703	A→G	8.4%	intergenic (+22/‑206)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,334,704	G→C	8.5%	intergenic (+23/‑205)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,334,705	C→T	8.6%	intergenic (+24/‑204)	ispB → / → sfsB	all‑trans‑octaprenyl‑diphosphate synthase/putative transcriptional regulator SfsB
RA	3,335,996	C→G	5.7%	V167L (GTG→CTG)	murA ←	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	3,336,002	C→G	5.8%	A165P (GCA→CCA)	murA ←	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	3,336,003	G→C	5.7%	G164G (GGC→GGG) ‡	murA ←	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	3,336,004	C→G	5.9%	G164A (GGC→GCC) ‡	murA ←	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	3,336,010	C→G	5.9%	S162T (AGC→ACC)	murA ←	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
RA	3,336,934	G→C	5.4%	intergenic (‑131/+29)	ibaG ← / ← mlaB	acid stress protein IbaG/intermembrane phospholipid transport system protein MlaB
RA	3,339,818	Δ1 bp	5.1%	coding (248/810 nt)	mlaF ←	intermembrane phospholipid transport system, ATP binding subunit MlaF
RA	3,339,828:1	+T	5.1%	coding (238/810 nt)	mlaF ←	intermembrane phospholipid transport system, ATP binding subunit MlaF
RA	3,348,556	T→C	5.3%	R35R (CGT→CGC)	yrbL →	protein kinase‑like domain‑containing protein YrbL
RA	3,348,557	G→C	5.5%	G36R (GGC→CGC) ‡	yrbL →	protein kinase‑like domain‑containing protein YrbL
RA	3,348,558	G→A	5.4%	G36D (GGC→GAC) ‡	yrbL →	protein kinase‑like domain‑containing protein YrbL
RA	3,354,537	C→G	11.5%	intergenic (‑487/‑188)	yhcC ← / → gltB	radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB
RA	3,360,643	T→A	6.4%	intergenic (+27/‑533)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,644	G→C	6.5%	intergenic (+28/‑532)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,645	T→A	6.6%	intergenic (+29/‑531)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,370,703	G→A	5.1%	P112S (CCG→TCG)	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,704	A→C	5.9%	R111R (CGT→CGG)	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,708	G→C	5.5%	P110R (CCG→CGG) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,709	G→C	5.2%	P110A (CCG→GCG) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,713	G→T	5.5%	D108E (GAC→GAA) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,370,714	T→C	5.7%	D108G (GAC→GGC) ‡	nanE ←	putative N‑acetylmannosamine‑6‑phosphate epimerase
RA	3,371,064	A→C	5.7%	intergenic (‑28/+20)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,065	C→T	5.7%	intergenic (‑29/+19)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,068	A→G	5.6%	intergenic (‑32/+16)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,371,069	G→T	5.8%	intergenic (‑33/+15)	nanE ← / ← nanT	putative N‑acetylmannosamine‑6‑phosphate epimerase/N‑acetylneuraminate:H(+) symporter
RA	3,377,768	C→T	8.5%	intergenic (‑348/+47)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
RA	3,377,769	G→T	8.3%	intergenic (‑349/+46)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
RA	3,377,770	A→C	8.0%	intergenic (‑350/+45)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
RA	3,377,771	A→G	8.0%	intergenic (‑351/+44)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
RA	3,387,553	T→A	7.6%	R212R (CGA→CGT)	aaeB ←	aromatic carboxylic acid efflux pump subunit AaeB
RA	3,388,283	T→C	6.9%	T282A (ACA→GCA)	aaeA ←	aromatic carboxylic acid efflux pump membrane fusion protein
RA	3,388,284	A→T	6.9%	A281A (GCT→GCA) ‡	aaeA ←	aromatic carboxylic acid efflux pump membrane fusion protein
RA	3,388,285	G→A	7.4%	A281V (GCT→GTT) ‡	aaeA ←	aromatic carboxylic acid efflux pump membrane fusion protein
RA	3,392,176	C→A	5.3%	intergenic (‑148/+282)	tldD ← / ← yhdP	metalloprotease TldD/AsmA2 domain‑containing protein
RA	3,396,961	C→A	5.3%	A279S (GCG→TCG)	rng ←	RNase G
RA	3,396,962	T→G	5.9%	R278R (CGA→CGC)	rng ←	RNase G
RA	3,397,961	T→G	6.2%	S140R (AGC→CGC)	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,397,965	G→T	6.5%	V138V (GTC→GTA) ‡	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,397,967	C→T	6.3%	V138I (GTC→ATC) ‡	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,397,968	A→G	6.4%	Y137Y (TAT→TAC) ‡	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,397,970	A→C	6.5%	Y137D (TAT→GAT) ‡	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,397,974	C→A	6.5%	A135A (GCG→GCT)	yhdE ←	nucleoside triphosphate pyrophosphatase YhdE
RA	3,401,582	A→T	5.7%	L584Q (CTG→CAG)	csrD ←	regulator of CsrB and CsrC decay
RA	3,406,125	C→G	5.2%	A70G (GCT→GGT)	accC →	biotin carboxylase
RA	3,406,129	A→T	5.4%	E71D (GAA→GAT)	accC →	biotin carboxylase
RA	3,406,130	A→T	5.4%	I72F (ATC→TTC)	accC →	biotin carboxylase
RA	3,406,134	C→G	5.8%	T73S (ACC→AGC)	accC →	biotin carboxylase
RA	3,407,293	T→A	5.7%	intergenic (+27/‑82)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,294	T→A	5.5%	intergenic (+28/‑81)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,295	T→A	6.3%	intergenic (+29/‑80)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,423,396	T→G	5.2%	intergenic (+202/+27)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,399	C→A	5.3%	intergenic (+205/+24)	yhdZ → / ← rrfF	putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA
RA	3,423,620	A→G	6.8%	noncoding (36/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,621	C→G	6.9%	noncoding (35/76 nt)	thrV ←	tRNA‑Thr
RA	3,423,622	C→T	6.9%	noncoding (34/76 nt)	thrV ←	tRNA‑Thr
RA	3,430,941	C→A	7.8%	G159C (GGC→TGC)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,430,942	A→C	8.3%	F158L (TTT→TTG)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,430,947	G→T	8.2%	Q157K (CAA→AAA)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,430,948	T→G	8.2%	A156A (GCA→GCC)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,431,170	A→C	5.0%	R82R (CGT→CGG)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,437,908	T→A	6.6%	intergenic (+14/‑116)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,909	A→T	6.6%	intergenic (+15/‑115)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,910	A→T	6.6%	intergenic (+16/‑114)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,437,911	T→A	7.2%	intergenic (+17/‑113)	trkA → / → mscL	NAD‑binding component of Trk potassium transporters/large conductance mechanosensitive channel
RA	3,439,588	G→C	5.9%	intergenic (‑79/+28)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,439,589	G→C	5.9%	intergenic (‑80/+27)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,441,060	T→C	7.7%	K206E (AAG→GAG)	rpsD ←	30S ribosomal subunit protein S4
RA	3,441,061	G→C	7.9%	S205S (TCC→TCG) ‡	rpsD ←	30S ribosomal subunit protein S4
RA	3,441,062	G→A	7.6%	S205F (TCC→TTC) ‡	rpsD ←	30S ribosomal subunit protein S4
RA	3,442,572	A→G	5.0%	intergenic (‑101/+46)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,573	T→A	5.3%	intergenic (‑102/+45)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,574	C→T	5.0%	intergenic (‑103/+44)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,443,592	A→C	5.1%	M169R (ATG→AGG) ‡	secY ←	Sec translocon subunit SecY
RA	3,443,593	T→A	5.1%	M169L (ATG→TTG) ‡	secY ←	Sec translocon subunit SecY
RA	3,443,594	G→T	5.3%	T168T (ACC→ACA)	secY ←	Sec translocon subunit SecY
RA	3,448,275	T→G	7.0%	intergenic (‑126/+39)	rplN ← / ← rpsQ	50S ribosomal subunit protein L14/30S ribosomal subunit protein S17
RA	3,448,276	T→A	6.5%	intergenic (‑127/+38)	rplN ← / ← rpsQ	50S ribosomal subunit protein L14/30S ribosomal subunit protein S17
RA	3,448,277	T→A	6.6%	intergenic (‑128/+37)	rplN ← / ← rpsQ	50S ribosomal subunit protein L14/30S ribosomal subunit protein S17
RA	3,448,278	C→A	6.7%	intergenic (‑129/+36)	rplN ← / ← rpsQ	50S ribosomal subunit protein L14/30S ribosomal subunit protein S17
RA	3,453,174	C→T	5.4%	G33S (GGT→AGT)	rpsJ ←	30S ribosomal subunit protein S10
RA	3,453,175	A→G	5.4%	T32T (ACT→ACC)	rpsJ ←	30S ribosomal subunit protein S10
RA	3,455,457	T→A	5.7%	intergenic (‑59/‑121)	gspA ← / → gspC	Type II secretion system protein GspA/Type II secretion system protein GspC
RA	3,458,416	T→A	5.1%	I26I (ATT→ATA)	gspE →	Type II secretion system protein GspE
RA	3,458,418	T→A	5.4%	I27N (ATT→AAT)	gspE →	Type II secretion system protein GspE
RA	3,458,420	T→A	5.6%	Y28N (TAT→AAT)	gspE →	Type II secretion system protein GspE
RA	3,471,357	C→T	9.2%	intergenic (‑28/+43)	tufA ← / ← fusA	translation elongation factor Tu 1/elongation factor G
RA	3,471,361	T→G	8.4%	intergenic (‑32/+39)	tufA ← / ← fusA	translation elongation factor Tu 1/elongation factor G
RA	3,471,362	C→A	8.8%	intergenic (‑33/+38)	tufA ← / ← fusA	translation elongation factor Tu 1/elongation factor G
RA	3,471,366	A→G	8.3%	intergenic (‑37/+34)	tufA ← / ← fusA	translation elongation factor Tu 1/elongation factor G
RA	3,476,585	G→A	7.3%	intergenic (‑145/+22)	yheO ← / ← fkpA	putative DNA‑binding transcriptional regulator YheO/peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,476,586	T→C	8.0%	intergenic (‑146/+21)	yheO ← / ← fkpA	putative DNA‑binding transcriptional regulator YheO/peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,336	A→T	5.2%	A28A (GCT→GCA)	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,340	T→G	5.5%	E27A (GAA→GCA) ‡	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,341	C→A	5.7%	E27* (GAA→TAA) ‡	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,477,345	A→T	5.1%	A25A (GCT→GCA)	fkpA ←	peptidyl‑prolyl cis‑trans isomerase FkpA
RA	3,483,242	G→C	7.2%	S14T (AGC→ACC) ‡	yheT →	putative hydrolase YheT
RA	3,483,243	C→T	6.7%	S14S (AGC→AGT) ‡	yheT →	putative hydrolase YheT
RA	3,483,244	A→G	7.6%	S15G (AGT→GGT) ‡	yheT →	putative hydrolase YheT
RA	3,483,245	G→C	6.8%	S15T (AGT→ACT) ‡	yheT →	putative hydrolase YheT
RA	3,485,380	A→G	6.4%	intergenic (+21/+34)	prkB → / ← yhfA	putative phosphoribulokinase/OsmC family protein
RA	3,485,381	A→T	6.3%	intergenic (+22/+33)	prkB → / ← yhfA	putative phosphoribulokinase/OsmC family protein
RA	3,485,384	A→T	6.1%	intergenic (+25/+30)	prkB → / ← yhfA	putative phosphoribulokinase/OsmC family protein
RA	3,485,385	C→T	6.0%	intergenic (+26/+29)	prkB → / ← yhfA	putative phosphoribulokinase/OsmC family protein
RA	3,486,217	A→C	9.2%	Q33P (CAG→CCG) ‡	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,486,218	G→T	9.0%	Q33H (CAG→CAT) ‡	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,486,225	A→T	9.3%	K36* (AAA→TAA)	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,488,983	C→A	11.2%	V400L (GTG→TTG)	argD ←	N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase
RA	3,488,989	G→T	11.4%	H398N (CAC→AAC)	argD ←	N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase
RA	3,491,704	G→T	7.5%	intergenic (‑84/+21)	yhfG ← / ← ppiA	DUF2559 domain‑containing protein YhfG/peptidyl‑prolyl cis‑trans isomerase A
RA	3,491,705	A→C	6.9%	intergenic (‑85/+20)	yhfG ← / ← ppiA	DUF2559 domain‑containing protein YhfG/peptidyl‑prolyl cis‑trans isomerase A
RA	3,504,875	T→G	7.9%	intergenic (+92/+60)	frlR → / ← yhfS	putative DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS
RA	3,504,880	A→T	7.9%	intergenic (+97/+55)	frlR → / ← yhfS	putative DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS
RA	3,504,881	A→T	7.8%	intergenic (+98/+54)	frlR → / ← yhfS	putative DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS
RA	3,504,882	A→T	7.9%	intergenic (+99/+53)	frlR → / ← yhfS	putative DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS
RA	3,504,887	C→A	8.2%	intergenic (+104/+48)	frlR → / ← yhfS	putative DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS
RA	3,505,785	A→T	6.6%	I79N (ATT→AAT)	yhfS ←	putative aminotransferase YhfS
RA	3,512,578	A→G	8.4%	intergenic (‑234/+56)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,512,579	A→C	8.4%	intergenic (‑235/+55)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,512,585	T→G	8.4%	intergenic (‑241/+49)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,512,586	C→A	8.3%	intergenic (‑242/+48)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,512,592	G→T	7.9%	intergenic (‑248/+42)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,512,593	C→T	7.9%	intergenic (‑249/+41)	yhfZ ← / ← trpS	putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
RA	3,525,558	A→G	5.7%	intergenic (+135/+31)	mrcA → / ← nudE	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE
RA	3,525,559	A→C	5.7%	intergenic (+136/+30)	mrcA → / ← nudE	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE
RA	3,525,563	T→A	5.5%	intergenic (+140/+26)	mrcA → / ← nudE	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE
RA	3,525,567	G→T	5.1%	intergenic (+144/+22)	mrcA → / ← nudE	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE
RA	3,525,568	C→T	5.5%	intergenic (+145/+21)	mrcA → / ← nudE	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE
RA	3,530,671	A→C	9.8%	intergenic (+19/+44)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,672	G→C	9.8%	intergenic (+20/+43)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,673	G→C	10.0%	intergenic (+21/+42)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,674	G→T	9.0%	intergenic (+22/+41)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,539,805	G→A	5.5%	intergenic (+99/‑358)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,539,815	A→T	5.8%	intergenic (+109/‑348)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,539,816	T→A	5.8%	intergenic (+110/‑347)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,539,817	A→T	5.8%	intergenic (+111/‑346)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,544,689	A→T	7.6%	R52R (CGT→CGA)	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,692	C→G	7.9%	G51G (GGG→GGC) ‡	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,693	C→G	7.9%	G51A (GGG→GCG) ‡	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,544,696	A→T	7.7%	F50Y (TTC→TAC)	bioH ←	pimeloyl‑acyl carrier protein methyl ester esterase
RA	3,560,455:1	+G	100%	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR
RA	3,561,972	A→T	5.1%	intergenic (‑149/‑41)	glpE ← / → glpD	thiosulfate sulfurtransferase GlpE/aerobic glycerol 3‑phosphate dehydrogenase
RA	3,566,210	A→T	7.1%	G124G (GGT→GGA) ‡	glgP ←	glycogen phosphorylase
RA	3,566,212	C→G	7.2%	G124R (GGT→CGT) ‡	glgP ←	glycogen phosphorylase
RA	3,566,215	T→A	7.2%	N123Y (AAC→TAC)	glgP ←	glycogen phosphorylase
RA	3,566,218	C→G	7.1%	G122R (GGT→CGT)	glgP ←	glycogen phosphorylase
RA	3,566,220	A→T	6.8%	L121H (CTC→CAC)	glgP ←	glycogen phosphorylase
RA	3,569,431	A→G	7.5%	I630T (ATT→ACT)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,569,436	G→A	7.8%	H628H (CAC→CAT) ‡	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,569,437	T→C	7.2%	H628R (CAC→CGC) ‡	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,569,442	C→T	7.2%	E626E (GAG→GAA)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,714:1	+T	6.1%	coding (606/1974 nt)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,719	C→G	6.2%	V201L (GTG→CTG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,724	Δ1 bp	6.5%	coding (596/1974 nt)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,878	A→G	5.9%	W148R (TGG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,880	G→C	5.8%	P147R (CCG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,884	T→C	5.9%	T146A (ACG→GCG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,885	G→A	5.9%	R145R (CGC→CGT)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,889	G→C	5.9%	P144R (CCG→CGG)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,570,891	C→T	6.1%	P143P (CCG→CCA)	glgX ←	limit dextrin alpha‑1,6‑glucohydrolase
RA	3,577,657	A→G	10.8%	intergenic (‑65/+74)	gntK ← / ← gntR	D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR
RA	3,577,660	C→T	10.3%	intergenic (‑68/+71)	gntK ← / ← gntR	D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR
RA	3,585,060	C→G	7.9%	intergenic (+17/+21)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,061	C→T	7.9%	intergenic (+18/+20)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,062	A→G	7.7%	intergenic (+19/+19)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,585,063	C→G	7.4%	intergenic (+20/+18)	yrhB → / ← ggt	putative heat shock chaperone/glutathione hydrolase proenzyme
RA	3,589,997	A→C	5.2%	F11V (TTC→GTC)	ugpE ←	sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE
RA	3,589,998	T→G	5.2%	I10I (ATA→ATC)	ugpE ←	sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE
RA	3,590,001	C→A	5.4%	T9T (ACG→ACT) ‡	ugpE ←	sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE
RA	3,590,002	G→T	5.6%	T9K (ACG→AAG) ‡	ugpE ←	sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE
RA	3,601,505	A→C	5.7%	R194R (CGT→CGG) ‡	ftsX ←	cell division protein FtsX
RA	3,601,506	C→G	5.8%	R194P (CGT→CCT) ‡	ftsX ←	cell division protein FtsX
RA	3,601,507	G→T	5.7%	R194S (CGT→AGT) ‡	ftsX ←	cell division protein FtsX
RA	3,608,695	C→G	5.2%	intergenic (+46/+56)	zntA → / ← tusA	Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase/sulfur transfer protein TusA
RA	3,610,537	A→C	7.8%	P399P (CCT→CCG)	yhhS ←	putative transporter YhhS
RA	3,610,540	G→A	8.0%	V398V (GTC→GTT)	yhhS ←	putative transporter YhhS
RA	3,610,543	G→A	8.3%	H397H (CAC→CAT) ‡	yhhS ←	putative transporter YhhS
RA	3,610,544	T→C	8.4%	H397R (CAC→CGC) ‡	yhhS ←	putative transporter YhhS
RA	3,610,547	T→C	8.4%	E396G (GAA→GGA)	yhhS ←	putative transporter YhhS
RA	3,610,550	G→T	8.9%	P395Q (CCG→CAG)	yhhS ←	putative transporter YhhS
RA	3,614,830	G→A	6.0%	Q388Q (CAG→CAA)	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,831	A→T	6.0%	I389F (ATT→TTT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,832	T→C	6.0%	I389T (ATT→ACT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,617,382	A→C	5.0%	E123A (GAA→GCA)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,632,764	G→A	6.1%	intergenic (‑174/+88)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,766	C→G	6.2%	intergenic (‑176/+86)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,767	A→T	6.1%	intergenic (‑177/+85)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,770	A→T	6.2%	intergenic (‑180/+82)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,773	A→T	5.8%	intergenic (‑183/+79)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,774	C→G	6.0%	intergenic (‑184/+78)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,632,776	T→C	5.9%	intergenic (‑186/+76)	yhiJ ← / ← yhiL	DUF4049 domain‑containing protein YhiJ/putative uncharacterized protein YhiL
RA	3,638,818	G→T	6.8%	A393S (GCG→TCG)	pitA →	metal phosphate:H(+) symporter PitA
RA	3,639,338	T→C	5.1%	intergenic (+197/+47)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,639,343	T→A	5.3%	intergenic (+202/+42)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,639,344	T→A	5.3%	intergenic (+203/+41)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,639,349	G→A	6.0%	intergenic (+208/+36)	pitA → / ← uspB	metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B
RA	3,648,128	G→T	9.8%	noncoding (66/84 nt)	agrA →	small RNA AgrA
RA	3,648,129	C→T	9.7%	noncoding (67/84 nt)	agrA →	small RNA AgrA
RA	3,648,130	A→T	9.5%	noncoding (68/84 nt)	agrA →	small RNA AgrA
RA	3,648,131	A→G	9.6%	noncoding (69/84 nt)	agrA →	small RNA AgrA
RA	3,648,132	A→C	8.4%	noncoding (70/84 nt)	agrA →	small RNA AgrA
RA	3,655,922	C→T	8.5%	intergenic (‑20/+44)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,929	A→T	7.7%	intergenic (‑27/+37)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,932	G→A	7.8%	intergenic (‑30/+34)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,933	C→G	7.7%	intergenic (‑31/+33)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,934	T→C	7.7%	intergenic (‑32/+32)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,937	A→T	8.5%	intergenic (‑35/+29)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,655,944	A→G	7.4%	intergenic (‑42/+22)	yhiD ← / ← hdeB	inner membrane protein YhiD/periplasmic acid stress chaperone
RA	3,657,599	T→A	10.0%	intergenic (+32/+387)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,601	G→C	10.0%	intergenic (+34/+385)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,603	T→A	10.1%	intergenic (+36/+383)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,658,002	C→T	5.0%	noncoding (53/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,658,004	A→G	5.1%	noncoding (51/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,663,547	T→C	6.4%	intergenic (+20/+343)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,663,553	A→C	6.5%	intergenic (+26/+337)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,663,555	G→T	6.5%	intergenic (+28/+335)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,663,556	A→C	6.5%	intergenic (+29/+334)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,663,558	G→T	6.3%	intergenic (+31/+332)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,663,564	G→A	6.4%	intergenic (+37/+326)	mdtF → / ← gadW	multidrug efflux pump RND permease MdtF/DNA‑binding transcriptional dual regulator GadW
RA	3,674,388	G→A	5.2%	intergenic (+13/‑398)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,389	C→A	5.2%	intergenic (+14/‑397)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,676,366	G→A	5.2%	A662V (GCG→GTG)	yhjG ←	AsmA family protein YhjG
RA	3,676,370	C→G	5.2%	A661P (GCG→CCG)	yhjG ←	AsmA family protein YhjG
RA	3,676,373	C→G	5.6%	A660P (GCG→CCG)	yhjG ←	AsmA family protein YhjG
RA	3,676,377	T→C	5.0%	T658T (ACA→ACG)	yhjG ←	AsmA family protein YhjG
RA	3,677,828	T→G	5.8%	I175L (ATT→CTT)	yhjG ←	AsmA family protein YhjG
RA	3,677,833	A→G	5.9%	I173T (ATC→ACC) ‡	yhjG ←	AsmA family protein YhjG
RA	3,677,834	T→A	5.4%	I173F (ATC→TTC) ‡	yhjG ←	AsmA family protein YhjG
RA	3,677,835	C→T	5.9%	R172R (CGG→CGA)	yhjG ←	AsmA family protein YhjG
RA	3,677,840	C→A	5.4%	G171W (GGG→TGG)	yhjG ←	AsmA family protein YhjG
RA	3,681,132	A→G	7.0%	V270A (GTG→GCG) ‡	yhjJ ←	peptidase M16 family protein
RA	3,681,133	C→G	6.9%	V270L (GTG→CTG) ‡	yhjJ ←	peptidase M16 family protein
RA	3,681,134	C→T	7.2%	A269A (GCG→GCA)	yhjJ ←	peptidase M16 family protein
RA	3,697,969	C→G	6.0%	H504Q (CAC→CAG)	bcsE →	c‑di‑GMP‑binding protein BcsE
RA	3,702,835	G→A	5.7%	L12L (CTG→TTG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,837	G→C	5.8%	P11R (CCG→CGG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,839	T→C	6.7%	Q10Q (CAA→CAG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,708,595	G→A	6.4%	intergenic (‑890/+21)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,708,596	T→A	6.4%	intergenic (‑891/+20)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,708,597	T→C	6.4%	intergenic (‑892/+19)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,714,163:1	+T	5.7%	coding (2232/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,714,168	Δ1 bp	5.4%	coding (2227/2334 nt)	bisC ←	biotin sulfoxide reductase
RA	3,716,507	A→G	5.2%	intergenic (‑113/‑40)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,716,508	A→T	5.2%	intergenic (‑114/‑39)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,716,509	C→T	5.2%	intergenic (‑115/‑38)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,718,280	A→C	6.1%	D324A (GAC→GCC) ‡	ghrB →	glyoxylate reductase
RA	3,718,281	C→T	6.2%	D324D (GAC→GAT) ‡	ghrB →	glyoxylate reductase
RA	3,718,284	A→G	6.4%	*325* (TAA→TAG)	ghrB →	glyoxylate reductase
RA	3,718,285	G→T	6.0%	intergenic (+1/+49)	ghrB → / ← yiaF	glyoxylate reductase/DUF3053 domain‑containing protein YiaF
RA	3,722,301	A→C	5.1%	intergenic (+252/+27)	insK → / ← glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta
RA	3,728,215	T→A	8.0%	K386I (AAA→ATA)	xylB ←	xylulokinase
RA	3,728,217	A→T	8.1%	I385I (ATT→ATA) ‡	xylB ←	xylulokinase
RA	3,728,219	T→A	8.0%	I385F (ATT→TTT) ‡	xylB ←	xylulokinase
RA	3,729,399:1	+T	8.6%	intergenic (‑28/+44)	xylB ← / ← xylA	xylulokinase/xylose isomerase
RA	3,729,405	C→G	9.1%	intergenic (‑34/+38)	xylB ← / ← xylA	xylulokinase/xylose isomerase
RA	3,729,408	C→G	9.2%	intergenic (‑37/+35)	xylB ← / ← xylA	xylulokinase/xylose isomerase
RA	3,729,413	Δ1 bp	8.7%	intergenic (‑42/+30)	xylB ← / ← xylA	xylulokinase/xylose isomerase
RA	3,736,322	G→T	5.9%	intergenic (+165/+31)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,323	A→G	6.3%	intergenic (+166/+30)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,324	C→T	5.8%	intergenic (+167/+29)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,325	A→C	6.3%	intergenic (+168/+28)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,756,563	A→G	8.0%	intergenic (‑52/+113)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,756,564	T→A	7.7%	intergenic (‑53/+112)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,756,565	C→T	7.9%	intergenic (‑54/+111)	aldB ← / ← yiaY	aldehyde dehydrogenase B/L‑threonine dehydrogenase
RA	3,770,646	G→T	5.5%	P245Q (CCG→CAG)	yibH ←	inner membrane protein YibH
RA	3,770,649	A→C	5.7%	L244W (TTG→TGG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,650	A→T	5.6%	L244M (TTG→ATG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,651	G→T	6.2%	A243A (GCC→GCA)	yibH ←	inner membrane protein YibH
RA	3,770,654	A→C	5.8%	A242A (GCT→GCG)	yibH ←	inner membrane protein YibH
RA	3,771,192	G→C	5.3%	A63G (GCG→GGG)	yibH ←	inner membrane protein YibH
RA	3,781,101	A→C	9.5%	intergenic (+84/‑114)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,103	A→C	8.2%	intergenic (+86/‑112)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,781,131	T→G	6.7%	intergenic (+114/‑84)	lldD → / → trmL	L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase
RA	3,787,619	Δ1 bp	5.4%	coding (782/1260 nt)	envC →	murein hydrolase activator EnvC
RA	3,787,624:1	+A	5.7%	coding (787/1260 nt)	envC →	murein hydrolase activator EnvC
RA	3,792,765	C→T	5.1%	intergenic (‑214/+61)	kbl ← / ← htrL	2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL
RA	3,792,766	A→T	5.6%	intergenic (‑215/+60)	kbl ← / ← htrL	2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL
RA	3,792,767	A→T	5.1%	intergenic (‑216/+59)	kbl ← / ← htrL	2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL
RA	3,792,768	A→G	5.3%	intergenic (‑217/+58)	kbl ← / ← htrL	2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL
RA	3,796,006	T→C	5.4%	S10P (TCG→CCG) ‡	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,008	G→C	5.2%	S10S (TCG→TCC) ‡	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,011	G→C	5.8%	M11I (ATG→ATC)	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,796,013	G→A	5.3%	G12D (GGC→GAC)	waaC →	ADP‑heptose:LPS heptosyltransferase 1
RA	3,798,234	A→T	8.9%	intergenic (+27/+5)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,798,235	A→T	8.2%	intergenic (+28/+4)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,804,012	A→G	8.5%	N42N (AAT→AAC) ‡	waaB ←	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
RA	3,804,014	T→A	9.1%	N42Y (AAT→TAT) ‡	waaB ←	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
RA	3,804,016	C→T	9.2%	R41H (CGT→CAT)	waaB ←	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
RA	3,809,354	A→G	6.1%	E272G (GAA→GGA)	waaA →	KDO transferase
RA	3,809,356	C→A	6.5%	R273S (CGC→AGC)	waaA →	KDO transferase
RA	3,809,359	T→G	6.5%	F274V (TTC→GTC) ‡	waaA →	KDO transferase
RA	3,809,361	C→T	6.0%	F274F (TTC→TTT) ‡	waaA →	KDO transferase
RA	3,809,681	T→A	6.7%	V381D (GTT→GAT) ‡	waaA →	KDO transferase
RA	3,809,682	T→A	5.0%	V381V (GTT→GTA) ‡	waaA →	KDO transferase
RA	3,809,683	T→A	5.4%	S382T (TCC→ACC)	waaA →	KDO transferase
RA	3,810,321	T→C	5.0%	intergenic (+17/+22)	coaD → / ← mutM	pantetheine‑phosphate adenylyltransferase/DNA‑formamidopyrimidine glycosylase
RA	3,810,324	G→A	5.1%	intergenic (+20/+19)	coaD → / ← mutM	pantetheine‑phosphate adenylyltransferase/DNA‑formamidopyrimidine glycosylase
RA	3,815,816	C→G	7.0%	intergenic (‑48/+47)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
RA	3,815,819	C→G	7.7%	intergenic (‑51/+44)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
MC JC	3,815,859	Δ82 bp	100%		[rph]	[rph]
RA	3,817,940	T→A	5.5%	F61I (TTC→ATC)	dinD →	DNA damage‑inducible protein D
RA	3,817,948	G→T	6.2%	E63D (GAG→GAT)	dinD →	DNA damage‑inducible protein D
RA	3,817,949	A→C	5.8%	I64L (ATC→CTC)	dinD →	DNA damage‑inducible protein D
RA	3,831,757	C→T	7.4%	A434V (GCC→GTC)	yicH →	AsmA famly protein YicH
RA	3,831,761	C→G	7.3%	A435A (GCC→GCG)	yicH →	AsmA famly protein YicH
RA	3,831,764	C→G	7.3%	A436A (GCC→GCG)	yicH →	AsmA famly protein YicH
RA	3,831,768	A→G	7.0%	T438A (ACA→GCA)	yicH →	AsmA famly protein YicH
RA	3,832,188	A→T	5.2%	intergenic (+22/+31)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,845,746	G→A	7.6%	intergenic (+16/+30)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,845,748	C→G	8.5%	intergenic (+18/+28)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,845,750	T→C	7.3%	intergenic (+20/+26)	adeD → / ← uhpT	adenine deaminase/hexose‑6‑phosphate:phosphate antiporter
RA	3,865,561	T→C	5.8%	K238R (AAA→AGA)	yidE ←	putative transport protein YidE
RA	3,865,563	C→G	5.6%	L237L (CTG→CTC) ‡	yidE ←	putative transport protein YidE
RA	3,865,565	G→A	5.7%	L237L (CTG→TTG) ‡	yidE ←	putative transport protein YidE
RA	3,874,048	T→G	5.1%	K143Q (AAA→CAA)	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,874,049	G→C	5.1%	C142W (TGC→TGG) ‡	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,874,050	C→A	5.1%	C142F (TGC→TTC) ‡	dgoK ←	2‑dehydro‑3‑deoxygalactonokinase
RA	3,881,072	C→T	6.0%	R50R (CGG→CGA)	recF ←	DNA repair protein RecF
RA	3,881,075	A→G	6.0%	G49G (GGT→GGC)	recF ←	DNA repair protein RecF
RA	3,881,082	C→T	6.1%	G47D (GGC→GAC)	recF ←	DNA repair protein RecF
RA	3,881,085	A→G	6.1%	L46P (CTC→CCC)	recF ←	DNA repair protein RecF
RA	3,885,293	A→C	6.0%	N73T (AAC→ACC)	yidC →	membrane protein insertase YidC
RA	3,885,298	C→A	5.3%	R75S (CGT→AGT) ‡	yidC →	membrane protein insertase YidC
RA	3,885,299	G→C	5.7%	R75P (CGT→CCT) ‡	yidC →	membrane protein insertase YidC
RA	3,885,300	T→G	5.5%	R75R (CGT→CGG) ‡	yidC →	membrane protein insertase YidC
RA	3,885,305	G→T	5.9%	G77V (GGT→GTT)	yidC →	membrane protein insertase YidC
RA	3,888,212	Δ1 bp	5.6%	intergenic (+20/‑223)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,219	T→A	5.6%	intergenic (+27/‑216)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,224:1	+A	5.3%	intergenic (+32/‑211)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,891,502	C→G	9.8%	intergenic (+19/‑113)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,891,504	T→A	10.0%	intergenic (+21/‑111)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,891,506	C→G	9.4%	intergenic (+23/‑109)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,896,350	G→T	10.1%	A87E (GCA→GAA) ‡	adeP ←	adenine:H(+) symporter
RA	3,896,351	C→G	10.0%	A87P (GCA→CCA) ‡	adeP ←	adenine:H(+) symporter
RA	3,896,352	A→C	10.6%	V86V (GTT→GTG)	adeP ←	adenine:H(+) symporter
RA	3,897,613	G→A	5.5%	P36P (CCG→CCA)	cbrB →	putative inner membrane protein
RA	3,897,614	C→G	5.2%	L37V (CTG→GTG) ‡	cbrB →	putative inner membrane protein
RA	3,897,615	T→C	5.4%	L37P (CTG→CCG) ‡	cbrB →	putative inner membrane protein
RA	3,899,864	T→G	5.1%	K238N (AAA→AAC) ‡	yieL ←	putative hydrolase YieL
RA	3,899,866	T→A	5.1%	K238* (AAA→TAA) ‡	yieL ←	putative hydrolase YieL
RA	3,900,542	A→T	6.0%	I12I (ATT→ATA)	yieL ←	putative hydrolase YieL
RA	3,900,545	A→T	6.0%	A11A (GCT→GCA)	yieL ←	putative hydrolase YieL
RA	3,906,826	T→C	7.1%	intergenic (‑259/+27)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,906,828	A→T	7.6%	intergenic (‑261/+25)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,906,830	G→A	7.2%	intergenic (‑263/+23)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,918,917	T→A	6.3%	K314I (AAA→ATA) ‡	atpA ←	ATP synthase F1 complex subunit alpha
RA	3,918,918	T→A	6.0%	K314* (AAA→TAA) ‡	atpA ←	ATP synthase F1 complex subunit alpha
RA	3,920,809	G→A	5.3%	P27L (CCG→CTG)	atpF ←	ATP synthase Fo complex subunit b
RA	3,923,376	A→G	5.4%	V102A (GTG→GCG) ‡	rsmG ←	16S rRNA m(7)G527 methyltransferase
RA	3,923,377	C→T	5.4%	V102M (GTG→ATG) ‡	rsmG ←	16S rRNA m(7)G527 methyltransferase
RA	3,923,717	G→A	7.8%	intergenic (‑37/+27)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,718	G→C	7.9%	intergenic (‑38/+26)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,719	G→C	7.9%	intergenic (‑39/+25)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,720	T→C	7.8%	intergenic (‑40/+24)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,927,123	A→T	6.5%	intergenic (‑120/‑32)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,124	T→G	6.5%	intergenic (‑121/‑31)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,125	C→A	6.9%	intergenic (‑122/‑30)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,126	A→T	6.4%	intergenic (‑123/‑29)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,947,048	G→T	8.2%	intergenic (+16/+80)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,049	A→T	7.6%	intergenic (+17/+79)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,050	A→T	8.4%	intergenic (+18/+78)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,051	A→C	8.2%	intergenic (+19/+77)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,953,432	C→T	5.0%	intergenic (+19/‑46)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,433	A→G	5.1%	intergenic (+20/‑45)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,436	C→T	5.0%	intergenic (+23/‑42)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,437	A→G	5.1%	intergenic (+24/‑41)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,954,273	G→T	6.4%	E266* (GAA→TAA) ‡	ilvD →	dihydroxy‑acid dehydratase
RA	3,954,274	A→C	6.5%	E266A (GAA→GCA) ‡	ilvD →	dihydroxy‑acid dehydratase
RA	3,956,973:1	+A	6.1%	coding (848/894 nt)	ilvY ←	DNA‑binding transcriptional dual regulator IlvY
RA	3,956,978	Δ1 bp	6.1%	coding (843/894 nt)	ilvY ←	DNA‑binding transcriptional dual regulator IlvY
RA	3,959,515	T→A	7.7%	intergenic (+70/+17)	ilvC → / ← ppiC	ketol‑acid reductoisomerase (NADP(+))/peptidyl‑prolyl cis‑trans isomerase C
RA	3,959,924	A→T	12.8%	intergenic (‑111/+88)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,925	A→T	12.1%	intergenic (‑112/+87)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,926	A→T	12.4%	intergenic (‑113/+86)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,966,768	G→T	6.5%	E118* (GAA→TAA) ‡	rho →	transcription termination factor Rho
RA	3,966,769	A→T	6.6%	E118V (GAA→GTA) ‡	rho →	transcription termination factor Rho
RA	3,966,770	A→C	6.5%	E118D (GAA→GAC) ‡	rho →	transcription termination factor Rho
RA	3,969,429	A→C	5.5%	K133N (AAA→AAC)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,434	A→C	5.6%	D135A (GAT→GCT) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,435	T→A	5.7%	D135E (GAT→GAA) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,436	G→T	6.0%	A136S (GCG→TCG)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,441	G→T	6.0%	A137A (GCG→GCT)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,970,813	Δ1 bp	5.5%	coding (681/1131 nt)	wecB →	UDP‑N‑acetylglucosamine 2‑epimerase
RA	3,970,817:1	+G	6.3%	coding (685/1131 nt)	wecB →	UDP‑N‑acetylglucosamine 2‑epimerase
RA	3,971,996	T→A	6.7%	L246Q (CTG→CAG)	wecC →	UDP‑N‑acetyl‑D‑mannosamine dehydrogenase
RA	3,972,673	A→C	7.7%	E51A (GAG→GCG) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase 2
RA	3,972,674	G→T	6.2%	E51D (GAG→GAT) ‡	rffG →	dTDP‑glucose 4,6‑dehydratase 2
RA	3,975,732	A→C	5.1%	D196A (GAT→GCT)	wecE →	dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase
RA	3,975,734	A→T	5.2%	K197* (AAA→TAA) ‡	wecE →	dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase
RA	3,975,735	A→T	5.1%	K197I (AAA→ATA) ‡	wecE →	dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase
RA	3,975,737	G→T	5.7%	A198S (GCG→TCG)	wecE →	dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase
RA	3,976,399	C→A	8.0%	A41E (GCA→GAA)	wzxE →	lipid III flippase
RA	3,976,402	A→T	7.7%	N42I (AAT→ATT)	wzxE →	lipid III flippase
RA	3,976,405	T→G	7.6%	F43C (TTC→TGC)	wzxE →	lipid III flippase
RA	3,984,227	G→A	6.4%	intergenic (+34/+125)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,228	C→A	6.4%	intergenic (+35/+124)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,234	A→T	6.7%	intergenic (+41/+118)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,235	A→T	6.7%	intergenic (+42/+117)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,241	T→G	6.4%	intergenic (+48/+111)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,242	T→C	6.4%	intergenic (+49/+110)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,987,174	C→G	5.4%	D237H (GAT→CAT)	hemY ←	protein HemY
RA	3,987,175	C→G	5.3%	M236I (ATG→ATC)	hemY ←	protein HemY
RA	3,994,571	T→C	6.8%	L17P (CTG→CCG)	yifL →	putative lipoprotein YifL
RA	3,994,573	A→T	5.6%	T18S (ACG→TCG) ‡	yifL →	putative lipoprotein YifL
RA	3,994,575	G→A	6.0%	T18T (ACG→ACA) ‡	yifL →	putative lipoprotein YifL
RA	3,995,716	A→G	5.6%	H45R (CAT→CGT)	yigA →	conserved protein YigA
RA	3,995,718	C→A	5.9%	P46T (CCG→ACG) ‡	yigA →	conserved protein YigA
RA	3,995,720	G→C	6.2%	P46P (CCG→CCC) ‡	yigA →	conserved protein YigA
RA	3,995,722	T→G	5.7%	V47G (GTA→GGA)	yigA →	conserved protein YigA
RA	3,995,724	C→T	5.9%	R48C (CGC→TGC)	yigA →	conserved protein YigA
JC	4,001,645	Δ5 bp	100%	coding (220‑224/951 nt)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,259	G→A	5.7%	M278I (ATG→ATA)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,264	T→C	5.7%	F280S (TTT→TCT) ‡	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,265	T→A	5.4%	F280L (TTT→TTA) ‡	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,271	T→C	5.6%	F282F (TTT→TTC)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,398	T→C	7.2%	intergenic (+22/+21)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,400	T→A	7.2%	intergenic (+24/+19)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,402	G→A	7.3%	intergenic (+26/+17)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,008,408	A→G	5.2%	intergenic (+31/+31)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,409	A→C	5.7%	intergenic (+32/+30)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,415	T→A	5.8%	intergenic (+38/+24)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,416	T→A	5.6%	intergenic (+39/+23)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,422	G→T	6.0%	intergenic (+45/+17)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,008,423	C→T	6.0%	intergenic (+46/+16)	rhtC → / ← rhtB	L‑threonine exporter/L‑homoserine/L‑homoserine lactone/L‑threonine exporter
RA	4,015,333	A→T	6.8%	intergenic (+19/+21)	metE → / ← ysgA	cobalamin‑independent homocysteine transmethylase/putative dienelactone hydrolase
RA	4,017,216:1	+A	6.6%	intergenic (+24/‑117)	udp → / → rmuC	uridine phosphorylase/putative recombination limiting protein RmuC
RA	4,017,222	Δ1 bp	7.1%	intergenic (+30/‑111)	udp → / → rmuC	uridine phosphorylase/putative recombination limiting protein RmuC
RA	4,022,007	C→T	5.5%	G21G (GGC→GGT)	tatA →	twin arginine protein translocation system ‑ TatA protein
RA	4,023,525	G→T	7.0%	intergenic (+13/‑29)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,526	T→G	7.5%	intergenic (+14/‑28)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,527	C→A	7.0%	intergenic (+15/‑27)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,023,528	A→C	7.4%	intergenic (+16/‑26)	tatC → / → tatD	twin arginine protein translocation system ‑ TatC protein/3' ‑> 5' ssDNA/RNA exonuclease TatD
RA	4,049,986	G→T	8.2%	noncoding (88/109 nt)	spf →	small regulatory RNA Spot 42
RA	4,049,989	A→C	7.4%	noncoding (91/109 nt)	spf →	small regulatory RNA Spot 42
RA	4,051,259	G→T	8.4%	noncoding (224/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,051,262	A→C	8.2%	noncoding (227/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,060,261	G→T	7.3%	intergenic (+31/‑186)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,060,264	A→C	7.4%	intergenic (+34/‑183)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,062,811	C→A	6.8%	L189M (CTG→ATG) ‡	yihN →	putative transporter YihN
RA	4,062,813	G→T	6.6%	L189L (CTG→CTT) ‡	yihN →	putative transporter YihN
RA	4,062,814	A→C	6.3%	N190H (AAT→CAT) ‡	yihN →	putative transporter YihN
RA	4,062,816	T→G	6.5%	N190K (AAT→AAG) ‡	yihN →	putative transporter YihN
RA	4,072,802	G→T	6.4%	P257Q (CCG→CAG)	yihU ←	3‑sulfolactaldehyde reductase
RA	4,072,807	T→G	5.7%	P255P (CCA→CCC) ‡	yihU ←	3‑sulfolactaldehyde reductase
RA	4,072,808	G→T	5.4%	P255Q (CCA→CAA) ‡	yihU ←	3‑sulfolactaldehyde reductase
RA	4,072,811	A→C	6.2%	V254G (GTG→GGG) ‡	yihU ←	3‑sulfolactaldehyde reductase
RA	4,072,812	C→A	6.1%	V254L (GTG→TTG) ‡	yihU ←	3‑sulfolactaldehyde reductase
RA	4,072,817	A→C	6.6%	L252R (CTG→CGG)	yihU ←	3‑sulfolactaldehyde reductase
RA	4,082,696	G→C	6.1%	Q22E (CAG→GAG)	fdoH ←	formate dehydrogenase O subunit beta
RA	4,088,091	G→C	5.2%	intergenic (+34/+16)	yiiG → / ← frvR	DUF3829 domain‑containing lipoprotein YiiG/putative transcriptional regulator FrvR
RA	4,094,696	A→C	5.8%	intergenic (‑424/+27)	rhaD ← / ← rhaA	rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase
RA	4,094,703	C→A	6.1%	intergenic (‑431/+20)	rhaD ← / ← rhaA	rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase
RA	4,095,833	G→T	5.0%	N50K (AAC→AAA)	rhaA ←	L‑rhamnose isomerase
RA	4,095,940	G→A	6.9%	R15C (CGT→TGT)	rhaA ←	L‑rhamnose isomerase
RA	4,095,941	C→G	6.8%	Q14H (CAG→CAC) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,095,942	T→C	6.9%	Q14R (CAG→CGG) ‡	rhaA ←	L‑rhamnose isomerase
RA	4,097,357	G→C	5.4%	T31R (ACG→AGG)	rhaB ←	rhamnulokinase
RA	4,097,359	C→G	5.2%	L30L (CTG→CTC) ‡	rhaB ←	rhamnulokinase
RA	4,097,361	G→C	5.3%	L30V (CTG→GTG) ‡	rhaB ←	rhamnulokinase
RA	4,106,369	T→G	6.9%	noncoding (40/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,370	G→C	6.9%	noncoding (41/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,371	C→A	7.1%	noncoding (42/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,110,717	A→T	8.0%	intergenic (+32/+23)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,719	G→C	8.0%	intergenic (+34/+21)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,721	A→T	7.9%	intergenic (+36/+19)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,113,473	T→C	7.0%	L61L (TTG→CTG) ‡	uspD →	universal stress protein D
RA	4,113,474	T→A	7.0%	L61* (TTG→TAG) ‡	uspD →	universal stress protein D
RA	4,113,475	G→A	7.1%	L61L (TTG→TTA) ‡	uspD →	universal stress protein D
RA	4,114,536	C→T	8.0%	intergenic (‑64/+33)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,537	G→T	8.3%	intergenic (‑65/+32)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,538	A→C	7.9%	intergenic (‑66/+31)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,539	A→G	7.8%	intergenic (‑67/+30)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,116,286	A→C	5.0%	S313A (TCC→GCC)	glpK ←	glycerol kinase
RA	4,121,622	T→A	6.4%	E42D (GAA→GAT) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,623	T→A	6.3%	E42V (GAA→GTA) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,626	T→A	6.5%	N41I (AAC→ATC) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,121,627	T→A	6.5%	N41Y (AAC→TAC) ‡	hslU ←	ATPase component of the HslVU protease
RA	4,136,033	G→A	6.8%	intergenic (+18/‑75)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,038	T→C	7.1%	intergenic (+23/‑70)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,039	T→A	7.5%	intergenic (+24/‑69)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,042	T→A	7.1%	intergenic (+27/‑66)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,043	G→A	6.8%	intergenic (+28/‑65)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,048	T→C	6.8%	intergenic (+33/‑60)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,141,379	G→C	6.3%	L281L (CTC→CTG) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,141,380	A→T	6.3%	L281H (CTC→CAC) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,141,381	G→C	6.1%	L281V (CTC→GTC) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,147,304	G→C	5.9%	R56P (CGG→CCG)	frwD →	putative PTS enzyme IIB component FrwD
RA	4,148,049	C→G	5.6%	G90A (GGC→GCC)	yijO ←	putative DNA‑binding transcriptional regulator YijO
RA	4,153,472	C→A	14.4%	intergenic (‑374/+224)	ppc ← / ← argE	phosphoenolpyruvate carboxylase/acetylornithine deacetylase
RA	4,175,787	G→A	7.3%	noncoding (34/76 nt)	thrT →	tRNA‑Thr
RA	4,175,788	G→C	7.3%	noncoding (35/76 nt)	thrT →	tRNA‑Thr
RA	4,175,789	T→C	7.3%	noncoding (36/76 nt)	thrT →	tRNA‑Thr
RA	4,177,171	T→A	6.7%	intergenic (+43/‑187)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,177,172	T→A	5.9%	intergenic (+44/‑186)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,184,543	C→A	100%	P1100Q (CCG→CAG)	rpoB →	RNA polymerase subunit beta
RA	4,189,605	T→C	6.4%	intergenic (+32/‑181)	rpoC → / → yjaZ	RNA polymerase subunit beta'/conserved protein YjaZ
RA	4,189,606	T→G	6.8%	intergenic (+33/‑180)	rpoC → / → yjaZ	RNA polymerase subunit beta'/conserved protein YjaZ
RA	4,189,607	C→A	6.2%	intergenic (+34/‑179)	rpoC → / → yjaZ	RNA polymerase subunit beta'/conserved protein YjaZ
RA	4,189,608	G→A	6.5%	intergenic (+35/‑178)	rpoC → / → yjaZ	RNA polymerase subunit beta'/conserved protein YjaZ
RA	4,191,887	C→T	6.5%	G250E (GGA→GAA)	thiG ←	1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase
RA	4,196,352	G→C	7.4%	R153G (CGC→GGC)	rsd ←	regulator of sigma D
RA	4,196,354	G→C	7.5%	A152G (GCC→GGC)	rsd ←	regulator of sigma D
RA	4,196,356	G→C	7.4%	A151A (GCC→GCG)	rsd ←	regulator of sigma D
RA	4,227,550	G→A	11.7%	intergenic (+39/‑181)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,227,555	A→T	11.7%	intergenic (+44/‑176)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,227,560	T→C	10.7%	intergenic (+49/‑171)	metH → / → yjbB	cobalamin‑dependent methionine synthase/putative inorganic phosphate export protein
RA	4,231,004	G→C	8.1%	P217P (CCG→CCC)	rluF →	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
RA	4,231,006	T→C	8.0%	L218P (CTG→CCG) ‡	rluF →	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
RA	4,231,007	G→A	8.1%	L218L (CTG→CTA) ‡	rluF →	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
RA	4,231,009	G→C	8.1%	G219A (GGG→GCG)	rluF →	23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase
RA	4,235,440	C→A	5.8%	intergenic (+33/‑466)	pgi → / → yjbE	glucose‑6‑phosphate isomerase/uncharacterized protein YjbE
RA	4,235,446	G→T	5.9%	intergenic (+39/‑460)	pgi → / → yjbE	glucose‑6‑phosphate isomerase/uncharacterized protein YjbE
RA	4,235,447	C→T	5.9%	intergenic (+40/‑459)	pgi → / → yjbE	glucose‑6‑phosphate isomerase/uncharacterized protein YjbE
RA	4,236,226	T→C	7.1%	intergenic (+78/‑36)	yjbE → / → yjbF	uncharacterized protein YjbE/lipoprotein YjbF
RA	4,236,227	C→G	6.9%	intergenic (+79/‑35)	yjbE → / → yjbF	uncharacterized protein YjbE/lipoprotein YjbF
RA	4,236,228	C→G	7.2%	intergenic (+80/‑34)	yjbE → / → yjbF	uncharacterized protein YjbE/lipoprotein YjbF
RA	4,236,229	G→A	7.2%	intergenic (+81/‑33)	yjbE → / → yjbF	uncharacterized protein YjbE/lipoprotein YjbF
RA	4,246,587	C→G	5.1%	intergenic (‑168/‑197)	malE ← / → malK	maltose ABC transporter periplasmic binding protein/maltose ABC transporter ATP binding subunit
RA	4,261,349	G→A	6.0%	intergenic (+43/‑320)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,358	T→A	8.3%	intergenic (+52/‑311)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,359	T→A	8.9%	intergenic (+53/‑310)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,368	T→C	5.1%	intergenic (+62/‑301)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,262,250	G→C	8.2%	G194G (GGG→GGC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,262,255	G→C	10.2%	S196T (AGC→ACC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,263,306	C→G	5.3%	R309P (CGT→CCT) ‡	qorA ←	putative quinone oxidoreductase 1
RA	4,263,307	G→C	5.6%	R309G (CGT→GGT) ‡	qorA ←	putative quinone oxidoreductase 1
RA	4,263,308	C→G	5.3%	Q308H (CAG→CAC)	qorA ←	putative quinone oxidoreductase 1
RA	4,270,144	G→C	5.3%	intergenic (+17/‑94)	aphA → / → yjbQ	acid phosphatase/phosphotransferase/UPF0047 protein YjbQ
RA	4,270,146	T→C	5.0%	intergenic (+19/‑92)	aphA → / → yjbQ	acid phosphatase/phosphotransferase/UPF0047 protein YjbQ
RA	4,274,740	G→A	8.0%	intergenic (+79/+20)	ssb → / ← yjcB	ssDNA‑binding protein/uncharacterized protein YjcB
RA	4,274,742	T→A	8.6%	intergenic (+81/+18)	ssb → / ← yjcB	ssDNA‑binding protein/uncharacterized protein YjcB
RA	4,274,744	T→C	8.2%	intergenic (+83/+16)	ssb → / ← yjcB	ssDNA‑binding protein/uncharacterized protein YjcB
RA	4,275,151	C→A	6.1%	intergenic (‑110/‑320)	yjcB ← / → pdeC	uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC
RA	4,275,152	T→A	5.9%	intergenic (‑111/‑319)	yjcB ← / → pdeC	uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC
RA	4,275,154	T→A	6.3%	intergenic (‑113/‑317)	yjcB ← / → pdeC	uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC
RA	4,275,156	T→A	6.3%	intergenic (‑115/‑315)	yjcB ← / → pdeC	uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC
RA	4,275,157	T→G	6.1%	intergenic (‑116/‑314)	yjcB ← / → pdeC	uncharacterized protein YjcB/c‑di‑GMP phosphodiesterase PdeC
RA	4,277,223	A→T	7.2%	I54N (ATT→AAT)	soxS ←	DNA‑binding transcriptional dual regulator SoxS
RA	4,277,225	G→A	6.8%	Y53Y (TAC→TAT) ‡	soxS ←	DNA‑binding transcriptional dual regulator SoxS
RA	4,277,226	T→C	7.3%	Y53C (TAC→TGC) ‡	soxS ←	DNA‑binding transcriptional dual regulator SoxS
RA	4,277,228	A→T	7.3%	D52E (GAT→GAA)	soxS ←	DNA‑binding transcriptional dual regulator SoxS
RA	4,279,854	T→C	7.1%	intergenic (+26/‑126)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,855	G→A	7.0%	intergenic (+27/‑125)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,858	A→C	6.9%	intergenic (+30/‑122)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,861	G→T	6.6%	intergenic (+33/‑119)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,864	T→C	6.9%	intergenic (+36/‑116)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,865	G→A	7.0%	intergenic (+37/‑115)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,280,219	A→C	5.1%	E80D (GAA→GAC)	yjcE →	putative transporter YjcE
RA	4,283,230	A→G	5.5%	intergenic (‑155/+23)	yjcF ← / ← actP	pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter
RA	4,283,231	G→T	5.6%	intergenic (‑156/+22)	yjcF ← / ← actP	pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter
RA	4,283,232	A→C	5.7%	intergenic (‑157/+21)	yjcF ← / ← actP	pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter
RA	4,283,233	C→T	5.6%	intergenic (‑158/+20)	yjcF ← / ← actP	pentapeptide repeat‑containing protein YjcF/acetate/glycolate:cation symporter
RA	4,287,734	C→T	5.5%	intergenic (‑363/‑30)	acs ← / → nrfA	acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
RA	4,287,735	A→T	5.6%	intergenic (‑364/‑29)	acs ← / → nrfA	acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
RA	4,287,736	A→G	5.6%	intergenic (‑365/‑28)	acs ← / → nrfA	acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
RA	4,291,512	G→A	8.8%	M1M (GTG→ATG) †‡	nrfE →	putative cytochrome c‑type biogenesis protein NrfE
RA	4,291,513	T→C	8.8%	M1A (GTG→GCG) †‡	nrfE →	putative cytochrome c‑type biogenesis protein NrfE
RA	4,295,934	C→G	7.4%	intergenic (+140/+502)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,296,060	C→T	32.8%	intergenic (+266/+376)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,296,380:1	+CG	100%	intergenic (+586/+56)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,297,193	G→T	5.1%	intergenic (‑68/+26)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,194	A→T	5.3%	intergenic (‑69/+25)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,195	A→T	5.4%	intergenic (‑70/+24)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,196	A→C	5.7%	intergenic (‑71/+23)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,303,981	G→T	5.4%	Y43* (TAC→TAA)	mdtN ←	putative multidrug efflux pump membrane fusion protein
RA	4,303,984	A→C	5.8%	A42A (GCT→GCG)	mdtN ←	putative multidrug efflux pump membrane fusion protein
RA	4,306,084	G→T	9.7%	P172T (CCG→ACG)	yjcS ←	alkyl sulfatase
RA	4,307,294	A→T	8.2%	L169Q (CTG→CAG)	alsK ←	D‑allose kinase
RA	4,307,298	G→A	8.5%	P168S (CCC→TCC)	alsK ←	D‑allose kinase
RA	4,309,875	T→G	8.6%	K369T (AAA→ACA) ‡	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,309,876	T→A	8.5%	K369* (AAA→TAA) ‡	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,309,877	C→A	8.5%	L368L (CTG→CTT)	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,309,882	T→G	5.3%	S367R (AGT→CGT)	alsA ←	D‑allose ABC transporter ATP binding subunit
RA	4,312,074	C→T	8.9%	intergenic (‑32/+27)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,080	G→C	8.4%	intergenic (‑38/+21)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,083	G→C	9.1%	intergenic (‑41/+18)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,089	A→G	9.3%	intergenic (‑47/+12)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,315,437	A→T	5.9%	F34L (TTT→TTA) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,315,438	A→T	5.8%	F34Y (TTT→TAT) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,315,439	A→T	6.0%	F34I (TTT→ATT) ‡	phnO ←	aminoalkylphosphonate N‑acetyltransferase
RA	4,326,358	G→A	5.4%	intergenic (‑617/+41)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,359	C→A	5.4%	intergenic (‑618/+40)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,365	G→T	5.8%	intergenic (‑624/+34)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,366	A→C	5.8%	intergenic (‑625/+33)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,372	T→G	5.5%	intergenic (‑631/+27)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,373	T→C	5.4%	intergenic (‑632/+26)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,887	A→T	5.1%	intergenic (‑153/‑248)	yjdM ← / → crfC	conserved protein YjdM/clamp‑binding sister replication fork colocalization protein
RA	4,326,888	A→T	5.4%	intergenic (‑154/‑247)	yjdM ← / → crfC	conserved protein YjdM/clamp‑binding sister replication fork colocalization protein
RA	4,326,891	A→T	5.2%	intergenic (‑157/‑244)	yjdM ← / → crfC	conserved protein YjdM/clamp‑binding sister replication fork colocalization protein
RA	4,326,892	A→T	5.3%	intergenic (‑158/‑243)	yjdM ← / → crfC	conserved protein YjdM/clamp‑binding sister replication fork colocalization protein
RA	4,332,529	C→G	6.1%	Q248H (CAG→CAC)	basS ←	sensory histidine kinase BasS
RA	4,332,534	C→G	5.6%	V247L (GTT→CTT)	basS ←	sensory histidine kinase BasS
RA	4,335,654	T→A	5.0%	intergenic (‑64/+40)	eptA ← / ← adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
RA	4,335,655	T→A	5.7%	intergenic (‑65/+39)	eptA ← / ← adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
RA	4,336,974	A→T	6.0%	S20T (TCG→ACG)	adiC ←	arginine:agmatine antiporter
RA	4,336,979	A→C	6.1%	M18R (ATG→AGG)	adiC ←	arginine:agmatine antiporter
RA	4,336,981	C→G	6.3%	L17L (CTG→CTC) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,983	G→T	6.2%	L17M (CTG→ATG) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,988	A→T	6.0%	V15D (GTC→GAC)	adiC ←	arginine:agmatine antiporter
RA	4,360,310	A→T	7.3%	intergenic (‑279/+86)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,360,312	A→T	6.8%	intergenic (‑281/+84)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,360,314	A→T	7.2%	intergenic (‑283/+82)	cadB ← / ← cadC	lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC
RA	4,362,528	G→A	6.2%	intergenic (‑594/+23)	cadC ← / ← pheU	DNA‑binding transcriptional activator CadC/tRNA‑Phe
RA	4,362,529	T→C	6.4%	intergenic (‑595/+22)	cadC ← / ← pheU	DNA‑binding transcriptional activator CadC/tRNA‑Phe
RA	4,365,452	G→T	6.4%	intergenic (‑96/+20)	cutA ← / ← dcuA	copper binding protein CutA/C4‑dicarboxylate transporter DcuA
RA	4,365,453	A→C	6.4%	intergenic (‑97/+19)	cutA ← / ← dcuA	copper binding protein CutA/C4‑dicarboxylate transporter DcuA
RA	4,367,700	G→T	10.9%	L210M (CTG→ATG)	aspA ←	aspartate ammonia‑lyase
RA	4,367,701	G→C	10.6%	I209M (ATC→ATG) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,367,702	A→C	10.3%	I209S (ATC→AGC) ‡	aspA ←	aspartate ammonia‑lyase
RA	4,371,931	G→T	6.4%	E303* (GAA→TAA) ‡	groL →	chaperonin GroEL
RA	4,371,932	A→C	6.5%	E303A (GAA→GCA) ‡	groL →	chaperonin GroEL
RA	4,378,857	G→A	7.0%	R30C (CGC→TGC)	ampC ←	beta‑lactamase
RA	4,378,858	A→T	7.1%	H29Q (CAT→CAA) ‡	ampC ←	beta‑lactamase
RA	4,378,859	T→C	7.7%	H29R (CAT→CGT) ‡	ampC ←	beta‑lactamase
RA	4,378,976	A→T	7.0%	intergenic (‑32/+31)	ampC ← / ← frdD	beta‑lactamase/fumarate reductase membrane protein FrdD
RA	4,378,977	T→A	7.1%	intergenic (‑33/+30)	ampC ← / ← frdD	beta‑lactamase/fumarate reductase membrane protein FrdD
RA	4,378,978	A→T	7.1%	intergenic (‑34/+29)	ampC ← / ← frdD	beta‑lactamase/fumarate reductase membrane protein FrdD
RA	4,381,331	G→T	5.4%	P330T (CCG→ACG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,333	A→T	5.2%	L329Q (CTG→CAG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,381,335	A→C	5.2%	R328R (CGT→CGG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,390,401	C→A	5.8%	intergenic (‑41/+56)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,403	A→G	5.8%	intergenic (‑43/+54)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,404	C→T	5.8%	intergenic (‑44/+53)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,390,406	T→G	5.8%	intergenic (‑46/+51)	psd ← / ← rsgA	phosphatidylserine decarboxylase proenzyme/ribosome small subunit‑dependent GTPase A
RA	4,392,506	C→G	16.3%	noncoding (35/76 nt)	glyX →	tRNA‑Gly
RA	4,392,757	C→G	5.3%	intergenic (+99/‑135)	glyY → / → yjeV	tRNA‑Gly/uncharacterized protein YjeV
RA	4,395,454	T→C	5.8%	C463C (TGT→TGC)	nnr →	NAD(P)HX epimerase/NAD(P)HX dehydratase
RA	4,395,455	G→A	5.7%	A464T (GCA→ACA)	nnr →	NAD(P)HX epimerase/NAD(P)HX dehydratase
RA	4,400,133	G→T	6.5%	W294C (TGG→TGT)	miaA →	tRNA dimethylallyltransferase
RA	4,400,135	T→A	5.6%	L295H (CTT→CAT) ‡	miaA →	tRNA dimethylallyltransferase
RA	4,400,136	T→A	5.8%	L295L (CTT→CTA) ‡	miaA →	tRNA dimethylallyltransferase
RA	4,400,138	A→C	5.6%	D296A (GAC→GCC)	miaA →	tRNA dimethylallyltransferase
RA	4,400,322	T→C	5.2%	L12P (CTG→CCG)	hfq →	RNA‑binding protein Hfq
RA	4,400,324	Δ1 bp	5.3%	coding (37/309 nt)	hfq →	RNA‑binding protein Hfq
RA	4,400,330	C→G	6.0%	L15V (CTG→GTG)	hfq →	RNA‑binding protein Hfq
RA	4,400,334:1	+T	5.6%	coding (47/309 nt)	hfq →	RNA‑binding protein Hfq
RA	4,400,337	G→A	6.1%	R17Q (CGG→CAG)	hfq →	RNA‑binding protein Hfq
RA	4,409,175	T→C	5.0%	intergenic (+80/‑100)	rnr → / → rlmB	RNase R/23S rRNA 2'‑O‑ribose G2251 methyltransferase
RA	4,409,402	Δ1 bp	8.8%	coding (128/732 nt)	rlmB →	23S rRNA 2'‑O‑ribose G2251 methyltransferase
RA	4,409,407	T→A	8.9%	S45T (TCT→ACT)	rlmB →	23S rRNA 2'‑O‑ribose G2251 methyltransferase
RA	4,409,410:1	+A	8.9%	coding (136/732 nt)	rlmB →	23S rRNA 2'‑O‑ribose G2251 methyltransferase
RA	4,410,026	G→A	6.4%	intergenic (+20/‑107)	rlmB → / → yjfI	23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI
RA	4,410,034	G→A	6.7%	intergenic (+28/‑99)	rlmB → / → yjfI	23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI
RA	4,410,037	T→C	6.9%	intergenic (+31/‑96)	rlmB → / → yjfI	23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI
RA	4,415,523	G→C	5.9%	E417Q (GAG→CAG) ‡	aidB →	putative acyl‑CoA dehydrogenase AidB
RA	4,415,525	G→T	6.0%	E417D (GAG→GAT) ‡	aidB →	putative acyl‑CoA dehydrogenase AidB
RA	4,415,526	A→C	6.0%	M418L (ATG→CTG) ‡	aidB →	putative acyl‑CoA dehydrogenase AidB
RA	4,415,528	G→C	5.8%	M418I (ATG→ATC) ‡	aidB →	putative acyl‑CoA dehydrogenase AidB
RA	4,422,887	G→A	5.7%	A14A (GCG→GCA)	ulaE →	L‑ribulose‑5‑phosphate 3‑epimerase UlaE
RA	4,422,895	C→G	7.7%	A17G (GCC→GGC)	ulaE →	L‑ribulose‑5‑phosphate 3‑epimerase UlaE
RA	4,422,903	T→C	5.1%	C20R (TGC→CGC)	ulaE →	L‑ribulose‑5‑phosphate 3‑epimerase UlaE
RA	4,426,592	T→A	9.0%	intergenic (+35/+36)	rplI → / ← yjfZ	50S ribosomal subunit protein L9/protein YjfZ
RA	4,429,112:1	+G	5.9%	coding (178/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,120	Δ1 bp	5.7%	coding (186/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,125	A→G	5.5%	E64G (GAA→GGA)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,127	A→T	5.3%	I65F (ATC→TTC) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,129	C→T	5.3%	I65I (ATC→ATT) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,133:1	+C	5.2%	coding (199/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,433,316	G→A	6.7%	P237S (CCC→TCC)	qorB ←	NAD(P)H:quinone oxidoreductase
RA	4,433,318	A→T	6.8%	L236Q (CTG→CAG)	qorB ←	NAD(P)H:quinone oxidoreductase
RA	4,433,320	T→C	6.9%	G235G (GGA→GGG)	qorB ←	NAD(P)H:quinone oxidoreductase
RA	4,439,845	T→A	6.5%	intergenic (+52/+27)	ytfK → / ← ytfL	DUF1107 domain‑containing protein YtfK/putative inner membrane protein
RA	4,444,191	G→T	6.3%	G27V (GGC→GTC) ‡	tamB →	translocation and assembly module subunit TamB
RA	4,444,192	C→G	7.6%	G27G (GGC→GGG) ‡	tamB →	translocation and assembly module subunit TamB
RA	4,444,193	A→C	7.6%	T28P (ACC→CCC)	tamB →	translocation and assembly module subunit TamB
RA	4,450,955	A→G	6.6%	intergenic (+37/‑103)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,450,956	A→C	6.5%	intergenic (+38/‑102)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,450,962	T→G	7.0%	intergenic (+44/‑96)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,450,963	C→A	7.4%	intergenic (+45/‑95)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,450,969	G→T	7.0%	intergenic (+51/‑89)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,450,970	C→T	7.5%	intergenic (+52/‑88)	ytfQ → / → ytfR	galactofuranose ABC transporter periplasmic binding protein/galactofuranose ABC transporter putative ATP binding subunit
RA	4,457,196	A→G	5.7%	intergenic (+38/+118)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,197	A→C	5.7%	intergenic (+39/+117)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,203	T→G	6.4%	intergenic (+45/+111)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,204	C→A	6.3%	intergenic (+46/+110)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,210	G→T	6.4%	intergenic (+52/+104)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,457,211	C→T	6.7%	intergenic (+53/+103)	mpl → / ← yjgA	UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase/DUF615 domain‑containing protein YjgA
RA	4,459,873	G→A	5.7%	intergenic (+562/+27)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,878	C→A	5.3%	intergenic (+567/+22)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,879	A→G	5.2%	intergenic (+568/+21)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,880	C→T	5.2%	intergenic (+569/+20)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,881	T→G	5.2%	intergenic (+570/+19)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,459,886	T→C	5.1%	intergenic (+575/+14)	pmbA → / ← nrdG	metalloprotease PmbA/anaerobic ribonucleoside‑triphosphate reductase activating protein
RA	4,460,476	A→G	8.2%	intergenic (‑112/+46)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,477	A→C	8.1%	intergenic (‑113/+45)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,470,951	A→C	6.6%	intergenic (‑38/+35)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,952	T→C	6.8%	intergenic (‑39/+34)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,957	G→A	5.7%	intergenic (‑44/+29)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,958	G→T	6.1%	intergenic (‑45/+28)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,472,434	G→A	7.9%	R34* (CGA→TGA)	pyrL ←	pyrBI operon leader peptide
RA	4,472,437	T→C	7.9%	N33D (AAT→GAT)	pyrL ←	pyrBI operon leader peptide
RA	4,479,012	A→T	9.2%	intergenic (+123/+22)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,016	G→C	8.2%	intergenic (+127/+18)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,020	A→T	8.7%	intergenic (+131/+14)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,488,424	G→T	6.5%	intergenic (+24/+137)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,425	A→T	6.8%	intergenic (+25/+136)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,426	A→T	6.9%	intergenic (+26/+135)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,427	A→C	7.0%	intergenic (+27/+134)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,497,953	A→T	6.8%	intergenic (+13/‑319)	intB → / → insC‑6	KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA
RA	4,497,954	A→T	6.8%	intergenic (+14/‑318)	intB → / → insC‑6	KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA
RA	4,499,885	C→G	5.5%	pseudogene (907/1199 nt)	yjgX ←	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment
RA	4,499,887	G→C	5.5%	pseudogene (905/1199 nt)	yjgX ←	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment
RA	4,499,889	C→G	5.6%	pseudogene (903/1199 nt)	yjgX ←	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment
RA	4,502,105	A→G	7.4%	*443Q (TAA→CAA)	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,106	A→C	8.2%	A442A (GCT→GCG) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,107	G→T	7.3%	A442D (GCT→GAT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,108	C→T	7.3%	A442T (GCT→ACT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,510,334	G→T	10.6%	intergenic (+201/+356)	yjhV → / ← fecE	KpLE2 phage‑like element; putative uncharacterized protein YjhV/ferric citrate ABC transporter ATP binding subunit
RA	4,510,335	C→G	11.1%	intergenic (+202/+355)	yjhV → / ← fecE	KpLE2 phage‑like element; putative uncharacterized protein YjhV/ferric citrate ABC transporter ATP binding subunit
RA	4,510,336	A→C	10.6%	intergenic (+203/+354)	yjhV → / ← fecE	KpLE2 phage‑like element; putative uncharacterized protein YjhV/ferric citrate ABC transporter ATP binding subunit
RA	4,515,328	T→G	8.8%	E450D (GAA→GAC) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,329	T→A	8.8%	E450V (GAA→GTA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,330	C→A	8.7%	E450* (GAA→TAA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,517,556	T→G	5.9%	E54D (GAA→GAC) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,517,557	T→A	6.0%	E54V (GAA→GTA) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,517,558	C→A	5.6%	E54* (GAA→TAA) ‡	fecR ←	regulator for fec operon, periplasmic
RA	4,519,311	A→G	6.1%	intergenic (+509/+27)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,313	C→A	6.5%	intergenic (+511/+25)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,314	T→G	5.9%	intergenic (+512/+24)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,519,316	C→T	6.1%	intergenic (+514/+22)	insA‑7 → / ← yjhU	KpLE2 phage‑like element; IS1 repressor protein InsA/KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU
RA	4,520,500	Δ1 bp	10.0%	intergenic (‑176/+171)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,520,504:1	+T	10.3%	intergenic (‑180/+167)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,531,098	C→A	6.2%	C185F (TGT→TTT)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,531,118	Δ1 bp	5.1%	coding (534/1122 nt)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,532,534	G→C	6.2%	A217G (GCC→GGC)	yjhP ←	KpLE2 phage‑like element; putative methyltransferase YjhP
RA	4,532,537	G→C	6.2%	A216G (GCC→GGC)	yjhP ←	KpLE2 phage‑like element; putative methyltransferase YjhP
RA	4,537,639	T→G	6.3%	intergenic (‑45/+20)	nanS ← / ← nanM	N‑acetyl‑9‑O‑acetylneuraminate esterase/N‑acetylneuraminate mutarotase
RA	4,537,640	T→G	6.1%	intergenic (‑46/+19)	nanS ← / ← nanM	N‑acetyl‑9‑O‑acetylneuraminate esterase/N‑acetylneuraminate mutarotase
RA	4,537,643	C→A	6.4%	intergenic (‑49/+16)	nanS ← / ← nanM	N‑acetyl‑9‑O‑acetylneuraminate esterase/N‑acetylneuraminate mutarotase
RA	4,537,644	C→A	7.0%	intergenic (‑50/+15)	nanS ← / ← nanM	N‑acetyl‑9‑O‑acetylneuraminate esterase/N‑acetylneuraminate mutarotase
RA	4,544,603	C→G	6.0%	T100T (ACC→ACG)	fimC →	type 1 fimbriae periplasmic chaperone
RA	4,544,605	T→A	5.7%	L101* (TTA→TAA)	fimC →	type 1 fimbriae periplasmic chaperone
RA	4,544,607	C→G	5.3%	R102G (CGT→GGT)	fimC →	type 1 fimbriae periplasmic chaperone
RA	4,549,932	T→A	5.6%	intergenic (+222/+21)	fimH → / ← gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
RA	4,551,422	T→A	8.1%	intergenic (‑126/‑214)	gntP ← / → uxuA	fructuronate transporter/D‑mannonate dehydratase
RA	4,552,182	G→C	6.3%	G183R (GGC→CGC)	uxuA →	D‑mannonate dehydratase
RA	4,552,185	G→C	6.3%	A184P (GCG→CCG)	uxuA →	D‑mannonate dehydratase
RA	4,554,516	A→G	6.0%	intergenic (+155/‑60)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,554,517	A→C	6.4%	intergenic (+156/‑59)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,554,523	T→G	6.5%	intergenic (+162/‑53)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,554,524	C→A	5.9%	intergenic (+163/‑52)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,554,530	G→T	6.0%	intergenic (+169/‑46)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,554,531	C→T	5.8%	intergenic (+170/‑45)	uxuB → / → uxuR	D‑mannonate oxidoreductase/DNA‑binding transcriptional repressor UxuR
RA	4,558,211	T→G	5.1%	N27H (AAT→CAT)	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,558,215	G→C	5.1%	C25W (TGC→TGG)	hypT ←	DNA‑binding transcriptional dual regulator HypT
RA	4,561,587	G→T	6.1%	A363A (GCC→GCA)	yjiJ ←	putative transporter YjiJ
RA	4,561,590	A→C	6.2%	L362L (CTT→CTG)	yjiJ ←	putative transporter YjiJ
RA	4,566,645	T→A	6.7%	K201I (AAA→ATA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,566,646	T→A	6.7%	K201* (AAA→TAA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,593,430	G→T	5.6%	V431V (GTC→GTA) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,593,431	A→G	5.7%	V431A (GTC→GCC) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,593,434	C→T	5.7%	C430Y (TGC→TAC) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,593,435	A→C	5.7%	C430G (TGC→GGC) ‡	lgoT ←	galactonate:H(+) symporter
RA	4,597,121	C→T	6.4%	intergenic (+109/+29)	lgoD → / ← opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I
RA	4,597,122	C→A	6.9%	intergenic (+110/+28)	lgoD → / ← opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I
RA	4,597,123	C→G	6.4%	intergenic (+111/+27)	lgoD → / ← opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I
RA	4,597,124	T→G	6.4%	intergenic (+112/+26)	lgoD → / ← opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I
RA	4,597,125	A→G	6.5%	intergenic (+113/+25)	lgoD → / ← opgB	L‑galactonate oxidoreductase/phosphoglycerol transferase I
RA	4,604,753	T→A	5.0%	S198R (AGT→AGA)	bglJ →	DNA‑binding transcriptional regulator BglJ
RA	4,606,118	G→A	8.2%	noncoding (48/87 nt)	leuV ←	tRNA‑Leu
RA	4,606,239	A→G	35.9%	noncoding (48/87 nt)	leuP ←	tRNA‑Leu
RA	4,612,329	A→G	7.3%	intergenic (+40/‑82)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,612,330	G→C	7.3%	intergenic (+41/‑81)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,612,331	C→T	7.4%	intergenic (+42/‑80)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,630,792	G→C	5.4%	T20T (ACG→ACC)	slt →	soluble lytic murein transglycosylase
RA	4,631,638	C→T	7.5%	R302R (CGC→CGT)	slt →	soluble lytic murein transglycosylase
RA	4,631,639	G→C	7.4%	D303H (GAT→CAT)	slt →	soluble lytic murein transglycosylase
RA	4,631,642	G→C	7.5%	D304H (GAC→CAC) ‡	slt →	soluble lytic murein transglycosylase
RA	4,631,643	A→G	7.4%	D304G (GAC→GGC) ‡	slt →	soluble lytic murein transglycosylase
RA	4,639,554	A→T	6.9%	intergenic (+24/+36)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,555	A→T	6.9%	intergenic (+25/+35)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,556	A→T	6.9%	intergenic (+26/+34)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,557	A→T	6.8%	intergenic (+27/+33)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423719–3424234	3424542–3424238	5–824	87 [85]	[84] 88	[rrfD]–[rrlD]	[rrfD],[rrlD]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	7100 =	163 (1.140)	9 (0.070)	6/264	NT	5.9%	coding (860/1431 nt)	yaaJ	putative transporter YaaJ
	?	NC_000913	7130 =	131 (0.960)					coding (830/1431 nt)	yaaJ	putative transporter YaaJ
*	?	NC_000913	= 16653	NA (NA)	5 (0.040)	4/262	NT	NA	noncoding (1267/1345 nt)	IS186	repeat region
	?	NC_000913	= 16691	NA (NA)					noncoding (1305/1345 nt)	IS186	repeat region
*	?	NC_000913	= 66790	NA (NA)	3 (0.020) +CAAAG	3/266	NT	NA	noncoding (24/36 nt)	other	REP6f
	?	NC_000913	= 66829	NA (NA)					intergenic (‑279/+6)	araD/araA	L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase
*	?	NC_000913	= 68731	127 (0.890)	11 (0.080)	9/262	NT	8.2%	coding (1318/1701 nt)	araB	ribulokinase
	?	NC_000913	= 68753	126 (0.930)					coding (1296/1701 nt)	araB	ribulokinase
*	?	NC_000913	= 211775	132 (0.920)	8 (0.060)	6/266	NT	5.9%	coding (2097/2142 nt)	ldcC	lysine decarboxylase 2
	?	NC_000913	= 211799	127 (0.920)					coding (2121/2142 nt)	ldcC	lysine decarboxylase 2
*	?	NC_000913	213083 =	133 (0.930)	8 (0.060)	7/268	NT	5.8%	coding (753/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
	?	NC_000913	213120 =	131 (0.940)					coding (790/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
*	?	NC_000913	= 213087	135 (0.940)	10 (0.070)	5/266	NT	7.0%	coding (757/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
	?	NC_000913	= 213119	135 (0.980)					coding (789/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
*	?	NC_000913	= 213635	NA (NA)	5 (0.040)	5/262	NT	NA	noncoding (35/37 nt)	other	REP15
	?	NC_000913	= 213668	NA (NA)					noncoding (2/37 nt)	other	REP15
*	?	NC_000913	224059 =	NA (NA)	26 (0.190)	15/262	NT	NA	noncoding (289/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	224082 =	NA (NA)					noncoding (312/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	= 225281	NA (NA)	30 (0.220)	15/266	NT	NA	noncoding (1511/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	= 225293	NA (NA)					noncoding (1523/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	= 225755	132 (0.920)	9 (0.060)	8/268	NT	6.6%	intergenic (+180/‑4)	alaV/rrlH	tRNA‑Ala/23S ribosomal RNA
	?	NC_000913	3426816 =	NA (NA)					intergenic (‑33/+142)	rrlD/alaU	23S ribosomal RNA/tRNA‑Ala
*	?	NC_000913	= 228108	NA (NA)	20 (0.140)	13/268	NT	NA	noncoding (2350/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	= 228124	NA (NA)					noncoding (2366/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	= 228224	NA (NA)	11 (0.080)	5/264	NT	NA	noncoding (2466/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	= 228241	NA (NA)					noncoding (2483/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	= 238140	155 (1.080)	10 (0.070)	9/258	NT	6.3%	intergenic (+20/+117)	yafT/ykfM	lipoprotein YafT/uncharacterized protein YkfM
	?	NC_000913	= 238146	152 (1.140)					intergenic (+26/+111)	yafT/ykfM	lipoprotein YafT/uncharacterized protein YkfM
*	?	NC_000913	= 257907	0 (0.000)	148 (1.100)	101/260	NT	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
	?	NC_000913	258684 =	0 (0.000)					pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl
*	?	NC_000913	274347 =	NA (NA)	7 (0.050)	5/262	NT	NA	noncoding (803/1195 nt)	IS5	repeat region
	?	NC_000913	274410 =	NA (NA)					noncoding (740/1195 nt)	IS5	repeat region
*	?	NC_000913	274384 =	NA (NA)	6 (0.040)	4/270	NT	NA	noncoding (766/1195 nt)	IS5	repeat region
	?	NC_000913	274422 =	NA (NA)					noncoding (728/1195 nt)	IS5	repeat region
*	?	NC_000913	274620 =	NA (NA)	8 (0.060)	5/258	NT	NA	noncoding (530/1195 nt)	IS5	repeat region
	?	NC_000913	274663 =	NA (NA)					noncoding (487/1195 nt)	IS5	repeat region
*	?	NC_000913	= 274695	NA (NA)	7 (0.050)	6/268	NT	NA	noncoding (455/1195 nt)	IS5	repeat region
	?	NC_000913	= 274727	NA (NA)					noncoding (423/1195 nt)	IS5	repeat region
*	?	NC_000913	303617 =	140 (0.980)	8 (0.060)	7/250	NT	6.3%	intergenic (+12/+236)	yagU/ykgJ	inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
	?	NC_000913	303650 =	112 (0.860)					intergenic (+45/+203)	yagU/ykgJ	inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
*	?	NC_000913	= 303812	144 (1.010)	20 (0.150)	14/262	NT	12.6%	intergenic (+207/+41)	yagU/ykgJ	inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
	?	NC_000913	= 303823	141 (1.040)					intergenic (+218/+30)	yagU/ykgJ	inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
*	?	NC_000913	= 309754	134 (0.940)	7 (0.050)	6/266	NT	5.1%	coding (273/669 nt)	ecpB	putative fimbrial chaperone EcpB
	?	NC_000913	= 309789	132 (0.960)					coding (238/669 nt)	ecpB	putative fimbrial chaperone EcpB
*	?	NC_000913	= 315520	NA (NA)	18 (0.130)	12/262	NT	NA	noncoding (292/1255 nt)	IS3	repeat region
	?	NC_000913	= 315537	NA (NA)					noncoding (309/1255 nt)	IS3	repeat region
*	?	NC_000913	315563 =	NA (NA)	20 (0.150)	9/256	NT	NA	noncoding (335/1255 nt)	IS3	repeat region
	?	NC_000913	315599 =	NA (NA)					noncoding (371/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315572	NA (NA)	68 (0.510)	15/256	NT	NA	noncoding (344/1255 nt)	IS3	repeat region
	?	NC_000913	= 315588	NA (NA)					noncoding (360/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315646	NA (NA)	89 (0.650)	25/266	NT	NA	noncoding (418/1255 nt)	IS3	repeat region
	?	NC_000913	= 315665	NA (NA)					noncoding (437/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315646	NA (NA)	3 (0.020)	3/266	NT	NA	noncoding (418/1255 nt)	IS3	repeat region
	?	NC_000913	= 315687	NA (NA)					noncoding (459/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315651	NA (NA)	9 (0.070)	6/260	NT	NA	noncoding (423/1255 nt)	IS3	repeat region
	?	NC_000913	= 315703	NA (NA)					noncoding (475/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315852	NA (NA)	142 (1.020)	25/268	NT	NA	noncoding (624/1255 nt)	IS3	repeat region
	?	NC_000913	= 315875	NA (NA)					noncoding (647/1255 nt)	IS3	repeat region
*	?	NC_000913	315892 =	NA (NA)	27 (0.190)	13/270	NT	NA	noncoding (664/1255 nt)	IS3	repeat region
	?	NC_000913	315923 =	NA (NA)					noncoding (695/1255 nt)	IS3	repeat region
*	?	NC_000913	= 315920	NA (NA)	3 (0.020)	3/270	NT	NA	noncoding (692/1255 nt)	IS3	repeat region
	?	NC_000913	= 316019	NA (NA)					noncoding (791/1255 nt)	IS3	repeat region
*	?	NC_000913	= 316046	NA (NA)	4 (0.030)	3/260	NT	NA	noncoding (818/1255 nt)	IS3	repeat region
	?	NC_000913	= 316070	NA (NA)					noncoding (842/1255 nt)	IS3	repeat region
*	?	NC_000913	= 316093	NA (NA)	5 (0.040)	5/270	NT	NA	noncoding (865/1255 nt)	IS3	repeat region
	?	NC_000913	= 316135	NA (NA)					noncoding (907/1255 nt)	IS3	repeat region
*	?	NC_000913	316193 =	NA (NA)	7 (0.050)	4/258	NT	NA	noncoding (965/1255 nt)	IS3	repeat region
	?	NC_000913	316230 =	NA (NA)					noncoding (1002/1255 nt)	IS3	repeat region
*	?	NC_000913	= 316201	NA (NA)	47 (0.350)	16/258	NT	NA	noncoding (973/1255 nt)	IS3	repeat region
	?	NC_000913	= 316220	NA (NA)					noncoding (992/1255 nt)	IS3	repeat region
*	?	NC_000913	349885 =	NA (NA)	5 (0.040)	5/262	NT	NA	noncoding (1/36 nt)	other	REP25g
	?	NC_000913	349915 =	NA (NA)					noncoding (31/36 nt)	other	REP25g
*	?	NC_000913	= 354605	NA (NA)	3 (0.020)	3/262	NT	NA	noncoding (6/28 nt)	other	REPt26a
	?	NC_000913	= 354653	NA (NA)					noncoding (13/36 nt)	other	REP26b
*	?	NC_000913	381663 =	NA (NA)	21 (0.150)	11/262	NT	NA	noncoding (404/1331 nt)	IS2	repeat region
	?	NC_000913	381703 =	NA (NA)					noncoding (444/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381669	NA (NA)	22 (0.160)	13/262	NT	NA	noncoding (410/1331 nt)	IS2	repeat region
	?	NC_000913	= 381695	NA (NA)					noncoding (436/1331 nt)	IS2	repeat region
*	?	NC_000913	381681 =	NA (NA)	4 (0.030)	4/258	NT	NA	noncoding (422/1331 nt)	IS2	repeat region
	?	NC_000913	381753 =	NA (NA)					noncoding (494/1331 nt)	IS2	repeat region
*	?	NC_000913	382282 =	NA (NA)	5 (0.040)	5/264	NT	NA	noncoding (1023/1331 nt)	IS2	repeat region
	?	NC_000913	382313 =	NA (NA)					noncoding (1054/1331 nt)	IS2	repeat region
*	?	NC_000913	420323 =	112 (0.780)	7 (0.050)	6/262	NT	6.3%	coding (733/1320 nt)	brnQ	branched chain amino acid transporter BrnQ
	?	NC_000913	420352 =	103 (0.760)					coding (762/1320 nt)	brnQ	branched chain amino acid transporter BrnQ
*	?	NC_000913	= 424454	105 (0.730)	6 (0.040)	4/260	NT	5.6%	coding (465/582 nt)	acpH	acyl carrier protein phosphodiesterase
	?	NC_000913	= 424488	102 (0.760)					coding (431/582 nt)	acpH	acyl carrier protein phosphodiesterase
*	?	NC_000913	438168 =	133 (0.930)	7 (0.050)	5/262	NT	5.6%	intergenic (‑33/+147)	yajO/dxs	1‑deoxyxylulose‑5‑phosphate synthase YajO/1‑deoxy‑D‑xylulose‑5‑phosphate synthase
	?	NC_000913	438259 =	109 (0.800)					intergenic (‑124/+56)	yajO/dxs	1‑deoxyxylulose‑5‑phosphate synthase YajO/1‑deoxy‑D‑xylulose‑5‑phosphate synthase
*	?	NC_000913	= 473683	100 (0.700)	8 (0.060)	6/266	NT	7.5%	coding (718/1287 nt)	amtB	ammonia/ammonium transporter
	?	NC_000913	= 473695	102 (0.740)					coding (730/1287 nt)	amtB	ammonia/ammonium transporter
*	?	NC_000913	501445 =	NA (NA)	3 (0.020)	3/264	NT	NA	noncoding (34/34 nt)	other	REP46a
	?	NC_000913	501527 =	NA (NA)					noncoding (35/36 nt)	other	REP46b
*	?	NC_000913	= 535514	108 (0.750)	7 (0.050)	4/252	NT	6.6%	coding (1599/1782 nt)	gcl	glyoxylate carboligase
	?	NC_000913	= 535539	101 (0.770)					coding (1624/1782 nt)	gcl	glyoxylate carboligase
*	?	NC_000913	549998 =	99 (0.690)	7 (0.050)	5/260	NT	6.7%	coding (372/816 nt)	ylbF	DUF2877 domain‑containing protein YlbF
	?	NC_000913	550045 =	101 (0.750)					coding (419/816 nt)	ylbF	DUF2877 domain‑containing protein YlbF
*	?	NC_000913	566777 =	NA (NA)	4138 (29.140)	272/274	NT	97.2%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	121 (0.850)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
*	?	NC_000913	569149 =	3823 (26.720)	215 (1.630)	34/254	NT	5.6%	coding (248/1527 nt)	ybcK	DLP12 prophage; putative recombinase
	?	NC_000913	569173 =	3760 (28.560)					coding (272/1527 nt)	ybcK	DLP12 prophage; putative recombinase
*	?	NC_000913	= 569159	3996 (27.930)	242 (1.840)	36/254	NT	6.1%	coding (258/1527 nt)	ybcK	DLP12 prophage; putative recombinase
	?	NC_000913	= 569161	3760 (28.560)					coding (260/1527 nt)	ybcK	DLP12 prophage; putative recombinase
*	?	NC_000913	570695 =	3398 (23.750)	194 (1.430)	38/262	NT	5.8%	intergenic (+267/‑198)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
	?	NC_000913	570719 =	3127 (23.030)					intergenic (+291/‑174)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
*	?	NC_000913	= 570701	3387 (23.680)	176 (1.300)	29/262	NT	5.3%	intergenic (+273/‑192)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
	?	NC_000913	= 570711	3127 (23.030)					intergenic (+283/‑182)	ybcK/ybcL	DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL
*	?	NC_000913	= 572411	1304 (9.110)	88 (0.650)	23/262	NT	8.1%	coding (44/102 nt)	ylcH	DLP12 prophage; uncharacterized protein YlcH
	?	NC_000913	= 572431	751 (5.530)					coding (64/102 nt)	ylcH	DLP12 prophage; uncharacterized protein YlcH
*	?	NC_000913	= 572471	121 (0.850)	73 (0.680) +34 bp	19/208	NT	50.5%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein
	?	NC_000913	1095438 =	69 (0.480)					noncoding (65/1258 nt)	IS3	repeat region
*	?	NC_000913	= 601044	95 (0.660)	6 (0.040)	5/258	NT	6.1%	coding (2331/3144 nt)	cusA	copper/silver export system RND permease
	?	NC_000913	= 601061	97 (0.730)					coding (2348/3144 nt)	cusA	copper/silver export system RND permease
*	?	NC_000913	696291 =	NA (NA)	3 (0.020)	3/260	NT	NA	intergenic (+15/+139)	ubiF/glnX	2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln
	?	NC_000913	696341 =	NA (NA)					noncoding (3/36 nt)	other	REP60a
*	?	NC_000913	= 730045	NA (NA)	8 (0.060)	7/266	NT	NA	coding (463/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	= 730067	NA (NA)					coding (485/4194 nt)	rhsC	rhs element protein RhsC
*	?	NC_000913	= 730978	136 (0.950)	8 (0.060)	6/264	NT	5.8%	coding (1396/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	= 3620562	NA (NA)					coding (1371/4236 nt)	rhsB	rhs element protein RhsB
*	?	NC_000913	732926 =	115 (0.800)	5 (0.040)	4/266	NT	5.8%	coding (3344/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	3765552 =	52 (0.380)					coding (3370/4134 nt)	rhsA	rhs element protein RhsA
*	?	NC_000913	753133 =	144 (1.010)	7 (0.050)	7/260	NT	5.0%	intergenic (‑338/+52)	ybgD/gltA	putative fimbrial protein YbgD/citrate synthase
	?	NC_000913	753157 =	130 (0.960)					intergenic (‑362/+28)	ybgD/gltA	putative fimbrial protein YbgD/citrate synthase
*	?	NC_000913	765068 =	156 (1.090)	8 (0.060)	4/264	NT	5.3%	intergenic (+19/+85)	sucD/mngR	succinyl‑CoA synthetase subunit alpha/DNA‑binding transcriptional repressor MngR
	?	NC_000913	765107 =	135 (0.990)					intergenic (+58/+46)	sucD/mngR	succinyl‑CoA synthetase subunit alpha/DNA‑binding transcriptional repressor MngR
*	?	NC_000913	= 768629	114 (0.800)	6 (0.050)	5/256	NT	5.4%	coding (652/2634 nt)	mngB	alpha‑mannosidase
	?	NC_000913	= 768654	106 (0.800)					coding (677/2634 nt)	mngB	alpha‑mannosidase
*	?	NC_000913	= 797526	124 (0.870)	8 (0.060)	7/262	NT	6.4%	coding (973/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
	?	NC_000913	= 797576	115 (0.850)					coding (1023/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
*	?	NC_000913	867591 =	128 (0.890)	12 (0.090)	8/266	NT	9.3%	coding (72/1872 nt)	gsiA	glutathione ABC transporter ATP binding subunit GsiA
	?	NC_000913	867617 =	111 (0.810)					coding (98/1872 nt)	gsiA	glutathione ABC transporter ATP binding subunit GsiA
*	?	NC_000913	934900 =	114 (0.800)	8 (0.060)	8/262	NT	7.1%	coding (1677/3990 nt)	ftsK	cell division DNA translocase FtsK
	?	NC_000913	934939 =	101 (0.740)					coding (1716/3990 nt)	ftsK	cell division DNA translocase FtsK
*	?	NC_000913	1054915 =	141 (0.990)	8 (0.060)	5/264	NT	6.0%	coding (1264/2745 nt)	torS	sensory histidine kinase TorS
	?	NC_000913	1054949 =	115 (0.840)					coding (1230/2745 nt)	torS	sensory histidine kinase TorS
*	?	NC_000913	= 1062410	NA (NA)	6 (0.040)	5/264	NT	NA	noncoding (35/37 nt)	other	REP91a
	?	NC_000913	= 1062443	NA (NA)					noncoding (2/37 nt)	other	REP91a
*	?	NC_000913	1062411 =	NA (NA)	6 (0.040)	4/264	NT	NA	noncoding (34/37 nt)	other	REP91a
	?	NC_000913	1062444 =	NA (NA)					noncoding (1/37 nt)	other	REP91a
*	?	NC_000913	1113376 =	NA (NA)	5 (0.040)	5/264	NT	NA	coding (2514/2544 nt)	opgH	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H
	?	NC_000913	1113405 =	NA (NA)					coding (2543/2544 nt)	opgH	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H
*	?	NC_000913	1121419 =	153 (1.070)	8 (0.060)	7/264	NT	5.3%	coding (69/246 nt)	dinI	DNA damage‑inducible protein I
	?	NC_000913	1121450 =	141 (1.030)					coding (38/246 nt)	dinI	DNA damage‑inducible protein I
*	?	NC_000913	1201870 =	139 (0.970)	7 (0.050)	7/264	NT	5.4%	coding (215/309 nt)	ymfJ	e14 prophage; protein YmfJ
	?	NC_000913	1201905 =	114 (0.830)					coding (180/309 nt)	ymfJ	e14 prophage; protein YmfJ
*	?	NC_000913	1207790 =	21 (0.150)	65 (0.510)	50/244	NT	76.7%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	21 (0.170)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	= 1207805	20 (0.140)	107 (0.850)	85/244	NT	84.7%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	= 1209602	21 (0.170)					pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	1243718 =	131 (0.920)	7 (0.050)	6/262	NT	5.3%	coding (539/612 nt)	emtA	lytic murein transglycosylase E
	?	NC_000913	1243755 =	126 (0.930)					coding (576/612 nt)	emtA	lytic murein transglycosylase E
*	?	NC_000913	= 1269275	NA (NA)	7 (0.050)	6/260	NT	5.3%	coding (1/108 nt)	ldrA	small toxic polypeptide LdrA
	?	NC_000913	= 1269313	133 (0.930)					intergenic (‑38/‑10)	ldrA/rdlA	small toxic polypeptide LdrA/putative antisense RNA regulator of LdrA
*	?	NC_000913	= 1299498	0 (0.000)	142 (1.020)	95/268	NT	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	1321818 =	144 (1.010)	9 (0.060)	8/272	NT	6.6%	coding (1129/1563 nt)	trpE	anthranilate synthase subunit TrpE
	?	NC_000913	= 1541637	112 (0.790)					coding (954/3741 nt)	narZ	nitrate reductase Z subunit alpha
*	?	NC_000913	1338512 =	129 (0.900)	10 (0.080)	8/250	NT	8.1%	intergenic (+6/+58)	acnA/ribA	aconitate hydratase 1/GTP cyclohydrolase 2
	?	NC_000913	1338549 =	110 (0.850)					intergenic (+43/+21)	acnA/ribA	aconitate hydratase 1/GTP cyclohydrolase 2
*	?	NC_000913	= 1364124	139 (0.970)	7 (0.050)	3/264	NT	5.0%	coding (1382/1488 nt)	puuC	gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase
	?	NC_000913	= 1364153	133 (0.970)					coding (1411/1488 nt)	puuC	gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase
*	?	NC_000913	1422487 =	145 (1.010)	74 (0.550)	59/260	NT	33.7%	coding (505/747 nt)	ydaV	Rac prophage; putative ATP‑binding protein YdaV
	?	NC_000913	= 1477432	155 (1.150)					coding (2289/2307 nt)	ydbD	DUF2773 domain‑containing protein YdbD
*	?	NC_000913	1433203 =	232 (1.620)	74 (0.520)	64/276	NT	24.2%	coding (472/591 nt)	pinR	Rac prophage; putative site‑specific recombinase
	?	NC_000913	= 1470456	NA (NA)					noncoding (1161/1221 nt)	IS30	repeat region
*	?	NC_000913	= 1434766	300 (2.100)	15 (0.110)	9/260	NT	6.8%	intergenic (‑360/+192)	ynaM/ttcC	Rac prophage; protein YnaM/putative tRNA 2‑thiocytidine (s(2)C32) synthase
	?	NC_000913	1632568 =	126 (0.930)					intergenic (‑283/‑322)	ydfJ/ynfT	putative transporter YdfJ/Qin prophage; protein YnfT
*	?	NC_000913	= 1435738	355 (2.480)	19 (0.140)	12/264	NT	5.1%	intergenic (‑119/+22)	uspF/ompN	nucleotide binding filament protein/outer membrane porin N
	?	NC_000913	= 1435745	364 (2.660)					intergenic (‑126/+15)	uspF/ompN	nucleotide binding filament protein/outer membrane porin N
*	?	NC_000913	1463439 =	235 (1.640)	17 (0.130)	5/262	NT	6.8%	intergenic (+1/‑100)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	1463490 =	242 (1.780)					intergenic (+52/‑49)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
*	?	NC_000913	= 1463445	237 (1.660)	17 (0.130)	7/262	NT	6.8%	intergenic (+7/‑94)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	= 1463482	242 (1.780)					intergenic (+44/‑57)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
*	?	NC_000913	= 1522204	144 (1.010)	9 (0.070)	8/256	NT	6.1%	coding (862/2103 nt)	yncD	putative TonB‑dependent outer membrane receptor
	?	NC_000913	= 1522222	144 (1.090)					coding (844/2103 nt)	yncD	putative TonB‑dependent outer membrane receptor
*	?	NC_000913	1679300 =	112 (0.780)	7 (0.050)	7/258	NT	6.4%	coding (874/945 nt)	ydgH	DUF1471 domain‑containing protein YdgH
	?	NC_000913	1679340 =	99 (0.740)					coding (914/945 nt)	ydgH	DUF1471 domain‑containing protein YdgH
*	?	NC_000913	= 1685678	123 (0.860)	8 (0.060)	7/266	NT	6.1%	coding (911/1404 nt)	fumC	fumarase C
	?	NC_000913	= 1685700	127 (0.920)					coding (889/1404 nt)	fumC	fumarase C
*	?	NC_000913	= 1697644	120 (0.840)	6 (0.050)	6/256	NT	5.2%	coding (397/768 nt)	hdhA	7‑alpha‑hydroxysteroid dehydrogenase
	?	NC_000913	= 1697668	108 (0.810)					coding (373/768 nt)	hdhA	7‑alpha‑hydroxysteroid dehydrogenase
*	?	NC_000913	1751652 =	118 (0.820)	7 (0.050)	6/262	NT	6.1%	coding (73/648 nt)	ydhW	protein YdhW
	?	NC_000913	1751699 =	103 (0.760)					coding (26/648 nt)	ydhW	protein YdhW
*	?	NC_000913	= 1759431	113 (0.790)	7 (0.050)	6/260	NT	6.0%	coding (1093/1221 nt)	sufS	L‑cysteine desulfurase
	?	NC_000913	= 1759453	113 (0.840)					coding (1071/1221 nt)	sufS	L‑cysteine desulfurase
*	?	NC_000913	1923294 =	119 (0.830)	6 (0.050)	5/256	NT	5.1%	noncoding (229/249 nt)	ryeA	small RNA RyeA
	?	NC_000913	1923334 =	112 (0.840)					intergenic (+20/+31)	ryeA/yebY	small RNA RyeA/DUF2511 domain‑containing protein YebY
*	?	NC_000913	1947279 =	113 (0.790)	6 (0.040)	5/262	NT	5.6%	coding (98/522 nt)	ruvC	crossover junction endodeoxyribonuclease RuvC
	?	NC_000913	1947324 =	96 (0.710)					coding (53/522 nt)	ruvC	crossover junction endodeoxyribonuclease RuvC
*	?	NC_000913	= 2075305	119 (0.830)	6 (0.040)	6/258	NT	5.1%	coding (527/1533 nt)	yeeR	CP4‑44 prophage; inner membrane protein YeeR
	?	NC_000913	= 2075330	113 (0.840)					coding (552/1533 nt)	yeeR	CP4‑44 prophage; inner membrane protein YeeR
*	?	NC_000913	= 2091318	143 (1.000)	14 (0.100)	9/270	NT	9.3%	coding (222/1305 nt)	hisD	histidinal/histidinol dehydrogenase
	?	NC_000913	= 2091365	133 (0.950)					coding (269/1305 nt)	hisD	histidinal/histidinol dehydrogenase
*	?	NC_000913	= 2097900	135 (0.940)	10 (0.070)	6/264	NT	6.9%	coding (402/981 nt)	wzzB	regulator of length of O‑antigen component of lipopolysaccharide chains
	?	NC_000913	= 2097921	141 (1.030)					coding (381/981 nt)	wzzB	regulator of length of O‑antigen component of lipopolysaccharide chains
*	?	NC_000913	2179804 =	141 (0.990)	8 (0.060)	5/264	NT	5.6%	coding (984/1278 nt)	yegT	putative transporter YegT
	?	NC_000913	2179840 =	133 (0.970)					coding (1020/1278 nt)	yegT	putative transporter YegT
*	?	NC_000913	2182649 =	158 (1.100)	9 (0.060)	6/268	NT	5.6%	coding (133/747 nt)	yegW	putative DNA‑binding transcriptional regulator YegW
	?	NC_000913	2182681 =	149 (1.070)					coding (101/747 nt)	yegW	putative DNA‑binding transcriptional regulator YegW
*	?	NC_000913	2250781 =	136 (0.950)	7 (0.050)	6/256	NT	5.5%	intergenic (+15/‑59)	yeiH/nfo	conserved inner membrane protein YeiH/endonuclease IV
	?	NC_000913	2250833 =	116 (0.870)					intergenic (+67/‑7)	yeiH/nfo	conserved inner membrane protein YeiH/endonuclease IV
*	?	NC_000913	= 2316083	145 (1.010)	10 (0.080)	8/256	NT	6.7%	coding (2596/2673 nt)	rcsD	RcsD phosphotransferase
	?	NC_000913	= 2316097	142 (1.070)					coding (2610/2673 nt)	rcsD	RcsD phosphotransferase
*	?	NC_000913	= 2366373	135 (0.940)	7 (0.050)	6/262	NT	5.1%	coding (464/1158 nt)	arnB	UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
	?	NC_000913	= 2366396	133 (0.980)					coding (487/1158 nt)	arnB	UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
*	?	NC_000913	2432892 =	159 (1.110)	15 (0.110)	11/266	NT	9.6%	coding (51/1269 nt)	folC	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
	?	NC_000913	2432921 =	130 (0.940)					coding (22/1269 nt)	folC	bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase
*	?	NC_000913	= 2456279	147 (1.030)	8 (0.060)	4/260	NT	5.3%	intergenic (‑633/+48)	yfcV/sixA	putative fimbrial protein YfcV/phosphohistidine phosphatase
	?	NC_000913	= 2456322	146 (1.080)					intergenic (‑676/+5)	yfcV/sixA	putative fimbrial protein YfcV/phosphohistidine phosphatase
*	?	NC_000913	2581648 =	NA (NA)	5 (0.040)	4/262	NT	NA	intergenic (+9/+86)	tktB/ypfG	transketolase 2/DUF1176 domain‑containing protein YpfG
	?	NC_000913	2581713 =	NA (NA)					noncoding (15/19 nt)	other	REP179c
*	?	NC_000913	= 2700077	136 (0.950)	7 (0.050)	5/252	NT	5.1%	intergenic (+154/+40)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB
	?	NC_000913	= 2700087	139 (1.060)					intergenic (+164/+30)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB
*	?	NC_000913	2729475 =	78 (0.550)	6 (0.050)	4/256	NT	7.8%	intergenic (‑31/+141)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA
	?	NC_000913	= 4168363	70 (0.530)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
*	?	NC_000913	= 2746335	148 (1.030)	9 (0.060)	5/268	NT	5.7%	intergenic (‑150/+99)	rpsP/ffh	30S ribosomal subunit protein S16/signal recognition particle protein component
	?	NC_000913	= 2746413	152 (1.090)					intergenic (‑228/+21)	rpsP/ffh	30S ribosomal subunit protein S16/signal recognition particle protein component
*	?	NC_000913	= 2805380	111 (0.780)	7 (0.050)	6/258	NT	5.9%	coding (566/1203 nt)	proV	glycine betaine ABC transporter ATP binding subunit ProV
	?	NC_000913	= 2805401	119 (0.890)					coding (587/1203 nt)	proV	glycine betaine ABC transporter ATP binding subunit ProV
*	?	NC_000913	2818234 =	36 (0.250)	6 (0.040)	5/264	NT	7.0%	noncoding (41/77 nt)	argY	tRNA‑Arg
	?	NC_000913	2818498 =	126 (0.920)					noncoding (52/77 nt)	argV	tRNA‑Arg
*	?	NC_000913	2860418 =	155 (1.080)	8 (0.060)	8/256	NT	5.8%	intergenic (+2/+49)	pphB/ygbI	phosphoprotein phosphatase 2/putative DeoR‑type DNA‑binding transcriptional regulator YgbI
	?	NC_000913	2860444 =	115 (0.870)					intergenic (+28/+23)	pphB/ygbI	phosphoprotein phosphatase 2/putative DeoR‑type DNA‑binding transcriptional regulator YgbI
*	?	NC_000913	= 2888333	NA (NA)	5 (0.040)	4/262	NT	NA	intergenic (‑21/+54)	cysH/cysI	phosphoadenosine phosphosulfate reductase/sulfite reductase, hemoprotein subunit
	?	NC_000913	= 2888366	NA (NA)					noncoding (32/37 nt)	other	REP200
*	?	NC_000913	2904902 =	116 (0.810)	8 (0.060)	5/258	NT	7.3%	coding (517/672 nt)	queE	putative 7‑carboxy‑7‑deazaguanine synthase QueE
	?	NC_000913	2904942 =	96 (0.720)					coding (477/672 nt)	queE	putative 7‑carboxy‑7‑deazaguanine synthase QueE
*	?	NC_000913	= 2947467	29 (0.200)	7 (0.050) +TTG	7/270	NT	8.0%	intergenic (+4/‑30)	metZ/metW	tRNA‑Met/tRNA‑Met
	?	NC_000913	= 2947708	136 (0.950)					intergenic (+25/+49)	metV/amiC	tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C
*	?	NC_000913	2947634 =	84 (0.590)	6 (0.040)	5/266	NT	6.5%	noncoding (28/77 nt)	metV	tRNA‑Met
	?	NC_000913	2947651 =	93 (0.670)					noncoding (45/77 nt)	metV	tRNA‑Met
*	?	NC_000913	2972297 =	127 (0.890)	7 (0.050)	6/264	NT	5.4%	coding (701/1041 nt)	tas	putative NADP(H)‑dependent aldo‑keto reductase Tas
	?	NC_000913	2972317 =	124 (0.910)					coding (721/1041 nt)	tas	putative NADP(H)‑dependent aldo‑keto reductase Tas
*	?	NC_000913	3124692 =	140 (0.980)	8 (0.060)	5/268	NT	5.5%	coding (768/1224 nt)	glcF	glycolate dehydrogenase, putative iron‑sulfur subunit
	?	NC_000913	3124729 =	138 (0.990)					coding (731/1224 nt)	glcF	glycolate dehydrogenase, putative iron‑sulfur subunit
*	?	NC_000913	= 3158891	155 (1.080)	11 (0.080)	7/262	NT	6.9%	intergenic (+7/+36)	yqhH/ygiQ	lipoprotein YqhH/radical SAM superfamily protein YgiQ
	?	NC_000913	= 3158922	152 (1.120)					intergenic (+38/+5)	yqhH/ygiQ	lipoprotein YqhH/radical SAM superfamily protein YgiQ
*	?	NC_000913	3204360 =	135 (0.940)	7 (0.050)	6/258	NT	5.2%	coding (230/369 nt)	folB	dihydroneopterin aldolase
	?	NC_000913	3204409 =	127 (0.950)					coding (181/369 nt)	folB	dihydroneopterin aldolase
*	?	NC_000913	3227693 =	132 (0.920)	11 (0.080)	10/254	NT	8.5%	intergenic (+26/‑108)	ygjI/ygjJ	putative transporter YgjI/protein YgjJ
	?	NC_000913	3227727 =	116 (0.880)					intergenic (+60/‑74)	ygjI/ygjJ	putative transporter YgjI/protein YgjJ
*	?	NC_000913	= 3252144	NA (NA)	10 (0.070)	9/264	NT	NA	noncoding (20/29 nt)	other	REPv234b
	?	NC_000913	= 3252155	NA (NA)					noncoding (9/29 nt)	other	REPv234b
*	?	NC_000913	= 3255287	NA (NA)	10 (0.070)	7/264	NT	NA	noncoding (34/36 nt)	other	REP236b
	?	NC_000913	= 3255319	NA (NA)					noncoding (2/36 nt)	other	REP236b
*	?	NC_000913	= 3298679	117 (0.820)	6 (0.040)	4/262	NT	5.1%	coding (168/636 nt)	yraR	putative nucleoside‑diphosphate‑sugar epimerase
	?	NC_000913	= 3298748	110 (0.810)					coding (99/636 nt)	yraR	putative nucleoside‑diphosphate‑sugar epimerase
*	?	NC_000913	3315701 =	166 (1.160)	9 (0.070)	7/266	NT	5.3%	coding (314/2673 nt)	infB	translation initiation factor IF‑2
	?	NC_000913	3315731 =	161 (1.170)					coding (284/2673 nt)	infB	translation initiation factor IF‑2
*	?	NC_000913	= 3521823	108 (0.750)	7 (0.050)	5/258	NT	6.2%	coding (150/540 nt)	hofN	DNA utilization protein HofN
	?	NC_000913	= 3521847	111 (0.830)					coding (126/540 nt)	hofN	DNA utilization protein HofN
*	?	NC_000913	= 3535637	139 (0.970)	9 (0.070)	8/264	NT	6.2%	coding (232/1353 nt)	envZ	sensory histidine kinase EnvZ
	?	NC_000913	= 3535645	140 (1.020)					coding (224/1353 nt)	envZ	sensory histidine kinase EnvZ
*	?	NC_000913	3558891 =	135 (0.940)	7 (0.050)	5/262	NT	5.2%	coding (624/1599 nt)	rtcR	DNA‑binding transcriptional activator RtcR
	?	NC_000913	3558925 =	126 (0.930)					coding (658/1599 nt)	rtcR	DNA‑binding transcriptional activator RtcR
*	?	NC_000913	= 3571207	120 (0.840)	7 (0.050)	6/260	NT	5.5%	coding (113/1974 nt)	glgX	limit dextrin alpha‑1,6‑glucohydrolase
	?	NC_000913	= 3571254	127 (0.940)					coding (66/1974 nt)	glgX	limit dextrin alpha‑1,6‑glucohydrolase
*	?	NC_000913	3620123 =	NA (NA)	5 (0.040)	4/264	NT	100%	coding (932/4236 nt)	rhsB	rhs element protein RhsB
	?	NC_000913	3620147 =	0 (0.000)					coding (956/4236 nt)	rhsB	rhs element protein RhsB
*	?	NC_000913	= 3620220	NA (NA)	9 (0.070)	6/264	NT	100%	coding (1029/4236 nt)	rhsB	rhs element protein RhsB
	?	NC_000913	= 3620255	0 (0.000)					coding (1064/4236 nt)	rhsB	rhs element protein RhsB
*	?	NC_000913	3667160 =	NA (NA)	3 (0.020)	3/264	NT	6.1%	coding (421/1401 nt)	gadA	glutamate decarboxylase A
	?	NC_000913	3667249 =	48 (0.340)					coding (332/1401 nt)	gadA	glutamate decarboxylase A
*	?	NC_000913	3688799 =	138 (0.960)	7 (0.050)	6/262	NT	5.0%	coding (375/3474 nt)	bcsC	cellulose biosynthesis protein BcsC
	?	NC_000913	3688841 =	135 (0.990)					coding (333/3474 nt)	bcsC	cellulose biosynthesis protein BcsC
*	?	NC_000913	= 3700159	124 (0.870)	8 (0.060)	6/264	NT	6.1%	noncoding (24/64 nt)	rdlD	antisense regulatory RNA RdlD
	?	NC_000913	= 3700189	128 (0.940)					noncoding (54/64 nt)	rdlD	antisense regulatory RNA RdlD
*	?	NC_000913	= 3743832	144 (1.010)	10 (0.070)	8/262	NT	7.0%	coding (90/468 nt)	yiaL	DUF386 domain‑containing protein YiaL
	?	NC_000913	= 3743856	130 (0.960)					coding (114/468 nt)	yiaL	DUF386 domain‑containing protein YiaL
*	?	NC_000913	3752912 =	129 (0.900)	10 (0.070)	9/266	NT	7.6%	coding (921/975 nt)	yiaU	putative LysR‑type DNA‑binding transcriptional regulator YiaU
	?	NC_000913	3752948 =	119 (0.860)					coding (957/975 nt)	yiaU	putative LysR‑type DNA‑binding transcriptional regulator YiaU
*	?	NC_000913	= 3795026	134 (0.940)	7 (0.050)	7/260	NT	5.1%	coding (98/1047 nt)	waaF	ADP‑heptose‑‑LPS heptosyltransferase 2
	?	NC_000913	= 3795059	136 (1.010)					coding (131/1047 nt)	waaF	ADP‑heptose‑‑LPS heptosyltransferase 2
*	?	NC_000913	= 3850327	123 (0.860)	13 (0.100)	6/264	NT	9.3%	coding (400/591 nt)	uhpA	DNA‑binding transcriptional activator UhpA
	?	NC_000913	= 3850357	135 (0.990)					coding (370/591 nt)	uhpA	DNA‑binding transcriptional activator UhpA
*	?	NC_000913	= 3854888	117 (0.820)	7 (0.050)	5/258	NT	6.0%	coding (967/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	= 3854930	109 (0.820)					coding (1009/1185 nt)	emrD	multidrug efflux pump EmrD
*	?	NC_000913	= 3857685	121 (0.850)	10 (0.070)	10/260	NT	7.4%	coding (720/1494 nt)	yidJ	putative sulfatase/phosphatase
	?	NC_000913	= 3857715	137 (1.020)					coding (690/1494 nt)	yidJ	putative sulfatase/phosphatase
*	?	NC_000913	3955391 =	149 (1.040)	8 (0.060)	6/264	NT	5.4%	coding (61/1545 nt)	ilvA	threonine deaminase
	?	NC_000913	3955421 =	137 (1.000)					coding (91/1545 nt)	ilvA	threonine deaminase
*	?	NC_000913	= 3967703	133 (0.930)	14 (0.110)	13/252	NT	10.0%	intergenic (+27/‑213)	rho/rfe	transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
	?	NC_000913	= 3967707	130 (1.000)					intergenic (+31/‑209)	rho/rfe	transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
*	?	NC_000913	= 3967987	128 (0.890)	11 (0.080)	6/258	NT	8.2%	coding (72/1104 nt)	rfe	UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
	?	NC_000913	= 3967995	127 (0.950)					coding (80/1104 nt)	rfe	UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
*	?	NC_000913	4004132 =	124 (0.870)	11 (0.080)	8/264	NT	8.2%	coding (47/891 nt)	rarD	putative transporter RarD
	?	NC_000913	4004162 =	127 (0.930)					coding (17/891 nt)	rarD	putative transporter RarD
*	?	NC_000913	= 4035360	NA (NA)	14 (0.100)	11/264	NT	100%	intergenic (+207/‑171)	hemG/rrsA	protoporphyrinogen oxidase/16S ribosomal RNA
	?	NC_000913	= 4035384	0 (0.000)					intergenic (+231/‑147)	hemG/rrsA	protoporphyrinogen oxidase/16S ribosomal RNA
*	?	NC_000913	= 4058302	146 (1.020)	9 (0.070)	8/258	NT	5.9%	intergenic (‑268/‑105)	glnA/bipA	glutamine synthetase/ribosome‑dependent GTPase, ribosome assembly factor
	?	NC_000913	= 4058333	153 (1.140)					intergenic (‑299/‑74)	glnA/bipA	glutamine synthetase/ribosome‑dependent GTPase, ribosome assembly factor
*	?	NC_000913	4077929 =	140 (0.980)	7 (0.050)	5/264	NT	5.1%	coding (481/990 nt)	yiiD	putative acetyltransferase YiiD
	?	NC_000913	4077965 =	128 (0.940)					coding (517/990 nt)	yiiD	putative acetyltransferase YiiD
*	?	NC_000913	= 4132550	149 (1.040)	8 (0.060)	7/264	NT	5.4%	intergenic (+283/‑66)	metL/metF	fused aspartate kinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
	?	NC_000913	= 4132566	139 (1.020)					intergenic (+299/‑50)	metL/metF	fused aspartate kinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase
*	?	NC_000913	4138253 =	142 (0.990)	7 (0.050)	6/268	NT	5.0%	coding (783/1104 nt)	gldA	L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
	?	NC_000913	4138292 =	128 (0.920)					coding (744/1104 nt)	gldA	L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase
*	?	NC_000913	4168332 =	75 (0.520)	7 (0.050)	5/256	NT	9.1%	intergenic (+132/‑40)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	4168374 =	70 (0.530)					noncoding (3/76 nt)	gltT	tRNA‑Glu
*	?	NC_000913	= 4168341	70 (0.490)	6 (0.050)	3/256	NT	8.2%	intergenic (+141/‑31)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	= 4168363	70 (0.530)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
*	?	NC_000913	= 4243350	151 (1.060)	14 (0.100)	9/262	NT	8.9%	coding (167/891 nt)	malG	maltose ABC transporter membrane subunit MalG
	?	NC_000913	= 4243364	142 (1.050)					coding (153/891 nt)	malG	maltose ABC transporter membrane subunit MalG
*	?	NC_000913	= 4247460	128 (0.890)	11 (0.080)	7/262	NT	8.0%	coding (677/1116 nt)	malK	maltose ABC transporter ATP binding subunit
	?	NC_000913	= 4247473	130 (0.960)					coding (690/1116 nt)	malK	maltose ABC transporter ATP binding subunit
*	?	NC_000913	4266889 =	NA (NA)	9 (0.070)	8/262	NT	NA	noncoding (1/34 nt)	other	REP318a
	?	NC_000913	4266917 =	NA (NA)					noncoding (29/34 nt)	other	REP318a
*	?	NC_000913	4284150 =	130 (0.910)	8 (0.060)	6/268	NT	6.0%	coding (753/1650 nt)	actP	acetate/glycolate:cation symporter
	?	NC_000913	4284181 =	125 (0.900)					coding (722/1650 nt)	actP	acetate/glycolate:cation symporter
*	?	NC_000913	4288211 =	148 (1.030)	9 (0.070)	9/264	NT	6.0%	coding (448/1437 nt)	nrfA	cytochrome c552 nitrite reductase
	?	NC_000913	4288265 =	138 (1.010)					coding (502/1437 nt)	nrfA	cytochrome c552 nitrite reductase
*	?	NC_000913	= 4331160	117 (0.820)	11 (0.080)	10/266	NT	9.0%	coding (659/1503 nt)	proP	osmolyte:H(+) symporter ProP
	?	NC_000913	= 4331187	111 (0.810)					coding (686/1503 nt)	proP	osmolyte:H(+) symporter ProP
*	?	NC_000913	4404334 =	160 (1.120)	15 (0.110)	9/264	NT	9.1%	intergenic (+30/‑52)	hflC/yjeT	regulator of FtsH protease/DUF2065 domain‑containing protein YjeT
	?	NC_000913	4404361 =	146 (1.070)					intergenic (+57/‑25)	hflC/yjeT	regulator of FtsH protease/DUF2065 domain‑containing protein YjeT
*	?	NC_000913	4415962 =	NA (NA)	8 (0.060)	6/264	NT	NA	noncoding (31/34 nt)	other	REP332
	?	NC_000913	4415992 =	NA (NA)					noncoding (1/34 nt)	other	REP332
*	?	NC_000913	4491024 =	154 (1.080)	9 (0.070)	6/260	NT	5.7%	coding (116/999 nt)	idnR	DNA‑binding transcriptional dual regulator IdnR
	?	NC_000913	4491062 =	154 (1.140)					coding (78/999 nt)	idnR	DNA‑binding transcriptional dual regulator IdnR
*	?	NC_000913	= 4513364	146 (1.020)	9 (0.070)	8/262	NT	6.1%	coding (46/999 nt)	fecC	ferric citrate ABC transporter membrane subunit FecC
	?	NC_000913	= 4513381	139 (1.020)					coding (29/999 nt)	fecC	ferric citrate ABC transporter membrane subunit FecC
*	?	NC_000913	= 4534139	121 (0.850)	10 (0.080)	6/256	NT	7.9%	intergenic (‑86/+291)	topAI/yjhZ	KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ
	?	NC_000913	= 4534160	120 (0.900)					intergenic (‑107/+270)	topAI/yjhZ	KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ
*	?	NC_000913	4549778 =	NA (NA)	7 (0.050)	5/272	NT	NA	intergenic (+68/+175)	fimH/gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
	?	NC_000913	4549830 =	NA (NA)					intergenic (+120/+123)	fimH/gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
*	?	NC_000913	= 4549784	NA (NA)	9 (0.070)	6/264	NT	NA	noncoding (36/36 nt)	other	REP345
	?	NC_000913	= 4549822	NA (NA)					intergenic (+112/+131)	fimH/gntP	type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter
*	?	NC_000913	= 4583124	157 (1.100)	13 (0.100)	12/262	NT	7.5%	intergenic (‑76/+125)	hsdM/hsdR	type I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component
	?	NC_000913	= 4583237	170 (1.250)					intergenic (‑189/+12)	hsdM/hsdR	type I restriction enzyme EcoKI methyltransferase component/type I restriction enzyme EcoKI endonuclease component
*	?	NC_000913	= 4601579	125 (0.870)	14 (0.100)	11/260	NT	10.3%	intergenic (‑62/+45)	dnaT/yjjB	primosomal protein DnaT/putative succinate exporter YjjB
	?	NC_000913	= 4601599	127 (0.940)					intergenic (‑82/+25)	dnaT/yjjB	primosomal protein DnaT/putative succinate exporter YjjB
*	?	NC_000913	4628815 =	NA (NA)	4 (0.030)	4/262	NT	NA	noncoding (31/34 nt)	other	REP354c
	?	NC_000913	4628845 =	NA (NA)					noncoding (1/34 nt)	other	REP354c
*	?	NC_000913	= 4636330	143 (1.000)	8 (0.060)	5/262	NT	5.5%	coding (324/690 nt)	creB	DNA‑binding transcriptional regulator CreB
	?	NC_000913	= 4636367	139 (1.020)					coding (361/690 nt)	creB	DNA‑binding transcriptional regulator CreB