New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 57247160 (1.170)9 (0.240)
+TGATCTTACCCAGCAATAGTGGACACGCGGCTAA		 7/194 NT 21.8% coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein
?NC_000913 = 2170235 27 (0.520)noncoding (65/1258 nt) IS3 repeat region

AACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572330‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG  <  NC_000913/2170235‑2170201
                                                                                                                                              ||||||||||||||||||||||||||||||||||                                   
aagAACTCCGGTGACTTCTGCGCGAGACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACT                                                                      <  2:154882/140‑1
   acccccaGTGCCTTCTGCGCTAAGCGGCGACGTTTATGCGCACATACAATCCAAACTCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT                                                                   <  2:992832/136‑1
   aatTCCGGTGACTTCTGCGCTAAACGGGGACGTGTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT                                                                   <  1:721221/140‑1
   aagTCCGGTGACTTCTGCGCTAAACGGGGTCGCGTATGCGCACATACAATCCAAACTCTCGTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT                                                                   <  2:445121/140‑1
    acgCCGGTGCCCTCCGGGCTAGACGGGGACGTTTAGGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTCGACCTCTGCGGAGGGGAAGCGTGAACTGATC                                                                  <  1:372786/140‑1
    acgCCGGTGACTTCGTCGCTAAGCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATC                                                                  <  1:846787/140‑1
             accTCTGCGATAAACGGGGACGTTTATGCTCACATCCCATCCATCATCTCTTCCCCCTTCCCAGATGCAGAAAGGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGC                                                         <  2:449219/140‑1
                   gctCTACACGGGGACGTTTATGCGCACATCCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT                                                   <  1:254396/140‑1
                   gccCTAATCGGGGACGCTTATCCGCACGTACAAGCCAAACTCGCTGCTCCCGTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT                                                   <  1:56876/140‑1
                      ctcAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGA                                                <  2:805213/140‑1
                           cgtGGACTTTTATGCGCACATACAAGCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                           <  1:991069/140‑1
                           cgcGGACGGTCATGCGCACATACAATCCACTCTCTCTTCTCGCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                           <  2:647917/140‑1
                                 cggTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA                                     <  1:945806/140‑1
                                    tcatcCGCACATCCAATCCCAACTCGCGGCACCCTTCACAGACGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCAGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTG                                  <  2:253010/138‑1
                                       tgcggcCATACAATCCATACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT                               <  1:296919/137‑1
                                         CGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATATTACCGCGCCGTGGTGGACACGCGGCTAAGTGAGTCA                             >  2:542205/1‑143
                                                ACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGCAATGCACCTGCAATTCTTTGCATCTAGCGTTTGCCCTCTGAGGCGCGAAAGCGTGAGCTGATCTTACCCAGCCATCGTGGACACGCGGCTAAGTCAGTCACCTCcca                      >  1:330481/1‑140
                                                         ACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTT             <  1:676117/143‑1
                                                         ACTCTCTGCTCCCTTCACAGATGCAGAAATGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTT             <  1:201866/143‑1
                                                               cTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA       <  1:619658/142‑1
                                                                    CCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG  <  1:675125/143‑1
                                                                                            TGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAGGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA       >  1:9553/1‑114
                                                                                            TGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAGGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA       <  2:9553/114‑1
                                                                                                                                              ||||||||||||||||||||||||||||||||||                                   
AACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572330‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG  <  NC_000913/2170235‑2170201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.