| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 60 (1.170) | 9 (0.240) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
7/194 | NT | 21.8% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 27 (0.520) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTA > NC_000913/2170093‑2170375 | aTCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAGGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:313067/1‑143 (MQ=255) cACCGTGATCTTTTTCGCTGTCATTAATCCTTCGTCGATAAGCATTGGCGTACTTCCGCTGTCACGTATAGCCGTCTGATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCAGTCAGAGGTGACTCACAt < 1:277781/143‑1 (MQ=21) tatTTTTGGCGGTCATTAATCCTTCAGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 1:425848/143‑1 (MQ=255) ttttGGCGGTCATTAATCCTGCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:34504/143‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGACTAACGGTCTGATATTACCCAGCAACTGTCTACACACGACTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:451497/143‑1 (MQ=25) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:181797/143‑1 (MQ=255) ttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa > 1:604392/1‑143 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 1:491368/1‑143 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc > 1:110882/1‑143 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 2:463681/143‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTGGTGGACACGCGGCTAAGTGAGTAACCTCTCCGTCAGAGGTGACTCACATGACAAAAACAGTATCAAACAgc > 2:219976/1‑142 (MQ=21) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTAGTGGCCAAGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCCACCAGTACAGAAcca > 2:242818/1‑142 (MQ=18) gctgggttAAGCATTGTCGTACTTCCCCTGTCCAGGATAACGGTCTAATCTTACTCGGAAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc < 2:651989/136‑1 (MQ=17) ggCGATGAGCATTGTCGTACTTCCGCGGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg < 2:298196/143‑1 (MQ=255) gCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATCACGGTCTGATCTTACCCAGCAATAGTGGCCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCGCATGACAAAAACAGTATCAACGAGCAAAAAACCCCGt > 2:622782/1‑143 (MQ=18) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGACTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTACAAAACACCggca > 2:565419/1‑140 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAAGAACGGTCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:679678/143‑1 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 1:24949/143‑1 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc > 1:984203/1‑143 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTCTCAGTCAGAGGAGACTCACATGACAAAAACAATATCAACCAGTAAAAAACCCCGTAAACAGCATTCGccgg > 2:765713/1‑141 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTAGTGGACACGGCGCTGAGTGCGTAAACCCTCAAGCACAGGTGCCTCACATGACCAAAACAGAACCAACCAGTACAAACCCCCCAGAACCCCATTCACCTGaca > 2:225634/1‑141 (MQ=255) gCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg > 2:801760/1‑143 (MQ=255) cGAGAAGAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg < 1:148890/143‑1 (MQ=37) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCCGTGa > 1:219155/1‑143 (MQ=38) tAACGGTCTGATCTTACCCAGCAATCGTGGACGCGCGTCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc < 1:32658/143‑1 (MQ=255) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc > 1:645090/1‑143 (MQ=34) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTg < 2:110882/143‑1 (MQ=32) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTg < 1:489295/143‑1 (MQ=32) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCACACACAGTCTCACCCCGTAAAAAACCCCGTAAACAGCATTCGCCCGACTTTCGCAGTGACGCCCTGAAg > 2:419368/1‑143 (MQ=11) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagg < 1:675125‑M2/143‑109 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagag < 1:619658‑M2/143‑114 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcctcccctccgcagaggtcaaacgctagatgcaaagaattgca > 1:9553‑M2/1‑30 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcctcccctccgcagaggtcaaacgctagatgcaaagaattgca < 2:9553‑M2/114‑85 (MQ=255) aaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagcattgcaggtgcatttctgcatctgtgaagggagcagagagt < 1:201866‑M2/143‑120 (MQ=255) aaCTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagt < 1:676117‑M2/143‑120 (MQ=255) tgggaggtgACTGACttagccgcgtgtccacgatggctgggtaagatcagctcacgctttcgcgcctcagagggcaaacgctagatgcaaagaattgcaggtgcattgctgcatctgtgaagggagaagagagtttggattgt > 1:330481‑M2/4‑15 (MQ=255) tGACTCACttagccgcgtgtccaccacggcgcggtaatatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcg > 2:542205‑M2/1‑8 (MQ=255) aCTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtatggattgtatggccgca < 1:296919‑M2/143‑138 (MQ=255) cACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgctgaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcgtctgtgaagggtgccgcgagttgggattggatgtgcggatga < 2:253010‑M2/143‑141 (MQ=255) | ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTA > NC_000913/2170093‑2170375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |