New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3493758 =	NA (NA)	4 (0.080)	4/246	NT	NA	intergenic (+9/‑253)	tsgA/nirB	putative transporter TsgA/nitrite reductase catalytic subunit NirB
	?	NC_000913	3493784 =	NA (NA)					noncoding (26/26 nt)	other	REPt248

GCTGATTTGTATAAATTTTCTTAAGTCACGGAATTGTCTGATATTTCATGTTTGTGCAAAAAATAGACAAAATGAGCGGGTTTATAGAAATAGATGCACGTAGCGGGGGAAGAGAGGAAAAGGCCGGACGACGATAGTGCCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3493905‑3493758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccggcCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTA  >  NC_000913/3493784‑3493925                                                                                                                                                                                                                                                                                                    GCTGATTTGTATAAATTTTCTTAAGTCACGGAATTGTCTGATATTTTATGTTTGTGCAAAACATAGACAAAATGAGCGGGTTTATAGAAATAGATGCACGTAGCGGGGGAAGAGAGGAAAAGGCCGGACGACGATAGTGCCGT                                                                                                                                                     >  1:147050/1‑143   TGATTTGTATAAATTTTCTTAAGGCACGGTATTGTCTGATATTTCATGTTTGTGCAAAAAATAGACAAAATGAGCGGGTTTATACAAATAGATGCACGTAGCGGGGGAAGAGAGGAAAAGGCCGGACGACGATAGTGCCGTCC                                                                                                                                                   <  2:504821/143‑1    GATTTGTATAAATTTTCTTAAGTCACGGAATTGTCTGATATTTCATGTTTGTGCAAAAAATAGACAAAATGAGCGGGTTTATAGAAATAGATGCACGTAGCGGGGGAAGAGAGGAAAAGGCCGGACGACGATAGTGCCGTCCG                                                                                                                                                  <  1:404980/143‑1                                                                                                                   AGGAAAAGGCCGGACGACGATAGTGCCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGA                                                          >  1:99496/1‑120                                                                                                                   AGGAAAAGGCCGGACGACGATAGTGCCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGA                                                          <  2:99496/120‑1                                                                                                                           GCCGGACGACGATAGTGCCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAGACCCGCTCATTTTGTCTATTTTTTGCACAAACCTGAAATCTCAGACAATTCCGTGACTTAAGAAAATTTATACAAA                           >  2:130892/1‑143                                                                                                                             CGGACGACGATAGTGCCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTCTAAACCCGCCCATTTTCTCTATTTTTTGCACAAACATGAACTCTCAAACCATTCCGTGACTTCAGCAAATTTCTACAAATC                         >  2:902748/1‑143                                                                                                                                               TCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTGTTGCCCCAGCAAGATATAGCAGACAATTCCGGGACTTAAGAAAATTTATACAAATCAGCAATATACGCACTAAG       >  1:469087/1‑143                                                                                                                                               TCCGGCCGTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAG       <  1:29981/143‑1                                                                                                                                                 CGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGACTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAACATTTATACAAATCAGCAATATACCCATTAAGGA     <  2:498903/143‑1                                                                                                                                                 CGGCCTTTTCCCCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGA     <  1:569983/143‑1                                                                                                                                                    CCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTA  >  1:42911/1‑143                                                                                                                                                    CCTTTTCCTCTCGTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTA  <  1:596823/143‑1                                                                                                                                                    CCTTTTCCTCCCTTCCCCCGCTACGTGCATCTATTTCTATAACCCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAAGATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTA  <  2:284044/143‑1                                                                                                                                                                                                                                                                                                    GCTGATTTGTATAAATTTTCTTAAGTCACGGAATTGTCTGATATTTCATGTTTGTGCAAAAAATAGACAAAATGAGCGGGTTTATAGAAATAGATGCACGTAGCGGGGGAAGAGAGGAAAAGGCCGGACGACGATAGTGCCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3493905‑3493758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtccggcCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAACATGAAATATCAGACAATTCCGTGACTTAAGAAAATTTATACAAATCAGCAATATACCCATTAAGGAGTA  >  NC_000913/3493784‑3493925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.