New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2533705	48 (0.930)	3 (0.060)	3/246	NT	6.2%	intergenic (+325/‑59)	cysK/ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
	?	NC_000913	= 2533719	45 (0.930)					intergenic (+339/‑45)	cysK/ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr

TTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGG  >  NC_000913/2533568‑2533846                                                                                                                                          |                                                                                                                                              ttCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAAca                                                                                                                                          >  1:837262/1‑142 (MQ=255)      ttcttcCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAg                                                                                                                                     <  1:719703/143‑1 (MQ=255)      ttcttcCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACAGCCAg                                                                                                                                     >  1:175534/1‑143 (MQ=255)       tcttcCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAATAATACAGGCTAAAGTCGAACCGCCAgg                                                                                                                                    >  1:347902/1‑143 (MQ=255)                 gCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCtagcctggcggttcgacttta                                                                                                                          <  2:30656‑M1/143‑22 (MQ=255)                   ggCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGt                                                                                                                        >  1:617118/1‑143 (MQ=255)                    gCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGtt                                                                                                                       <  2:397410/143‑1 (MQ=255)                        aaggTTTAAGGACGTACAAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                   <  2:195838/140‑1 (MQ=255)                        aaTGTTTAATGACGTACGAAACGGCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                   <  1:911526/143‑1 (MQ=255)                        aaTGTATGAAGACGCACGAAACGGCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTGGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGCCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                   <  2:399336/143‑1 (MQ=255)                         aTGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGAGCTCTTCGGGCGTCGCGACTGTTAAAAACTGGCGCTAACAATACCGGCTAAAGTCCAACCCCCACGCTAGACTTTATTTCcaca                                                                                                                  >  1:640799/1‑143 (MQ=255)                          tGTTTAATGACGTACGAAACGTCAGCGGGCAACGCCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCtagcctggcggttcgactttagcctgtatt                                                                                                                 <  2:390616‑M1/143‑31 (MQ=255)                                 tGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTcaa                                                                                                          >  2:62552/1‑143 (MQ=255)                                  gACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAc                                                                                                         >  1:51906/1‑143 (MQ=255)                                   aCGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTCACAATACAGGCTACAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTACAcc                                                                                                        >  2:797565/1‑143 (MQ=255)                                   aCGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAcc                                                                                                        >  1:444059/1‑143 (MQ=255)                                        ctaatcttCATCGTTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATaa                                                                                                   <  1:244961/136‑1 (MQ=255)                                        cGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCtagcctggcggttcgactttagcctgtattgttagcgccagttt                                                                                                   <  2:306744‑M1/143‑45 (MQ=255)                                        cGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATaa                                                                                                   <  1:678566/143‑1 (MQ=255)                                         gAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTTGCGCCAACAATACAGGCTAAAGTCGAACCGCCCGGCTAGACTTTAGTTCCACAACACTAAACCTATAAg                                                                                                  >  1:908431/1‑143 (MQ=255)                                          aaaCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTAGACAACACTAAACCTATCAGt                                                                                                 >  1:222441/1‑143 (MQ=255)                                           aaCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGtt                                                                                                >  1:973929/1‑143 (MQ=255)                                            aCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTg                                                                                               <  1:881734/143‑1 (MQ=255)                                            aCGTCAGCGGTCAACACCCGCCAGCAAGGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAATCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTg                                                                                               <  1:43178/143‑1 (MQ=255)                                              gTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTggg                                                                                             <  1:977346/143‑1 (MQ=255)                                                cAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACCTTAGTTCCACAACACTAAACCTATAAGGTGGGGa                                                                                           >  2:185147/1‑143 (MQ=255)                                                  gctggcAACACCCGGCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCTGCGGTTAATGTCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa                                                                                         <  2:761289/138‑1 (MQ=255)                                                  gCGGTCAACACCCGCCAGCAATGTACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa                                                                                         <  2:958502/143‑1 (MQ=255)                                                   cGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGCCTTTAGTTCCACAACACTACACCTATAAGTTGGGGAAAt                                                                                        >  1:514195/1‑143 (MQ=255)                                                        aaCACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGCAATACAAt                                                                                   >  1:884457/1‑143 (MQ=255)                                                        aaCACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAAt                                                                                   <  1:416421/143‑1 (MQ=255)                                                             ccGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACCGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACGTATAAGATGGGAAAAGACAACGTTcc                                                                              >  2:895089/1‑143 (MQ=255)                                                             ccGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATAAAATGtcac                                                                              >  2:97394/1‑140 (MQ=255)                                                               gCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAg                                                                            >  1:1010101/1‑143 (MQ=255)                                                                      aTGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAATTGGGGAAATACAATGTTCCAGCaagaag                                                                     >  1:312915/1‑143 (MQ=255)                                                                        ggACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGtt                                                                   <  2:837262/143‑1 (MQ=255)                                                                           cTGTATTGCGCTCTTCGTGCGTCGTGTCTGTTAAAAACTGGCGCTAATAATACAGGCGAAAGTCGAACCGCGAGGCGAGACTTGAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAcc                                                                <  1:838432/143‑1 (MQ=255)                                                                                ttGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc                                                           >  1:607361/1‑143 (MQ=255)                                                                                ttGCGCTCTTCGTGCGGCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACTACTCTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc                                                           <  2:453845/143‑1 (MQ=255)                                                                                  gcgcTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGCAATACAATGTTCCAGCAAGAAGTTACCATTACCg                                                         <  2:617118/143‑1 (MQ=255)                                                                                    gcTCTTCGTGCGTCGCGTCTGATAAAAACTGGAGCTAACAATACAGACTAAAGTCGAACCGCCAGGCAAGACTTTAGATACACAACACTAAACCTATAAGATGGGGAAATACAATATTCCAGCAAGAAGTAACCATAACCGCt                                                       >  2:72439/1‑143 (MQ=255)                                                                                          cGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGAATTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTGCCGCTCCGAAc                                                 >  2:750476/1‑143 (MQ=255)                                                                                           gTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACg                                                <  1:796157/143‑1 (MQ=255)                                                                                                     gcTGTTAATGGCTGGCGCTAACATTACAGGCTAAAGGCGAACCGCCAGGCTAGACTTTAGTTCCACAACACGAAGCCTATGAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCacac                                      <  2:539515/142‑1 (MQ=255)                                                                                                       tGTTAAAAACTGGCGCTGACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACAccc                                    >  1:977679/1‑143 (MQ=255)                                                                                                         ttAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGc                                  >  1:778510/1‑143 (MQ=255)                                                                                                             aaaCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggtgttgaccgctgacgtttcg                              <  2:306744‑M2/143‑100 (MQ=255)                                                                                                               aCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc                                                                 >  2:639708/1‑106 (MQ=255)                                                                                                               aCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc                                                                 <  1:639708/106‑1 (MQ=255)                                                                                                                   gcgcTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCCCCGAACGGTCTGCACACCCGCCCTGCTGcca                        >  2:343323/1‑142 (MQ=255)                                                                                                                      cTAACAATACAGGCTAAAGTCGAACTGCCAGGCTAGACTTTAGTTCCACAACACTGAACCCATAAGTTGGGGAAATACAATGTTCCAGCAAAAAGTTACCATTACCGCTCGCAACGGTCTGCACACCACCGCTCCTGccacgc                     >  2:898370/1‑139 (MQ=255)                                                                                                                           aaTACAGGCTAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggcgttgcccgctgacgtttcgtacgtcattaaaca                <  2:390616‑M2/143‑114 (MQ=255)                                                                                                                                aGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTCTAAGTTGGGGAAATACACTGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCTCACCCGCCCTGCTGCCCAGTTTGTAAaaga           >  2:329128/1‑143 (MQ=255)                                                                                                                                  gCTAAAGTCGACCCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAaagaag         <  2:374064/143‑1 (MQ=255)                                                                                                                                    tAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggtgttgaccgctgacgtttcgtacgtcattaaacattatgccgc       <  2:30656‑M2/143‑123 (MQ=255)                                                                                                                                         tCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAACCCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAggg  <  1:97394/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                              TTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGG  >  NC_000913/2533568‑2533846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.