New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2533705	48 (0.930)	3 (0.060)	3/246	NT	6.2%	intergenic (+325/‑59)	cysK/ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
	?	NC_000913	= 2533719	45 (0.930)					intergenic (+339/‑45)	cysK/ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr

GGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGGCTTCACTTCTGAAA  >  NC_000913/2533586‑2533860                                                                                                                                      |                                                                                                                                              ggCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGt                                                                                                                                      >  1:617118/1‑143 (MQ=255)  gCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGtt                                                                                                                                     <  2:397410/143‑1 (MQ=255)      aaggTTTAAGGACGTACAAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                                 <  2:195838/140‑1 (MQ=255)      aaTGTTTAATGACGTACGAAACGGCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                                 <  1:911526/143‑1 (MQ=255)      aaTGTATGAAGACGCACGAAACGGCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTGGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGCCGAACCGCCAGGCTAGACTTTAGTTCcac                                                                                                                                 <  2:399336/143‑1 (MQ=255)       aTGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGAGCTCTTCGGGCGTCGCGACTGTTAAAAACTGGCGCTAACAATACCGGCTAAAGTCCAACCCCCACGCTAGACTTTATTTCcaca                                                                                                                                >  1:640799/1‑143 (MQ=255)               tGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTcaa                                                                                                                        >  2:62552/1‑143 (MQ=255)                gACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAc                                                                                                                       >  1:51906/1‑143 (MQ=255)                 aCGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTCACAATACAGGCTACAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTACAcc                                                                                                                      >  2:797565/1‑143 (MQ=255)                 aCGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAAcc                                                                                                                      >  1:444059/1‑143 (MQ=255)                      ctaatcttCATCGTTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATaa                                                                                                                 <  1:244961/136‑1 (MQ=255)                      cGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATaa                                                                                                                 <  1:678566/143‑1 (MQ=255)                       gAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTTGCGCCAACAATACAGGCTAAAGTCGAACCGCCCGGCTAGACTTTAGTTCCACAACACTAAACCTATAAg                                                                                                                >  1:908431/1‑143 (MQ=255)                        aaaCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTAGACAACACTAAACCTATCAGt                                                                                                               >  1:222441/1‑143 (MQ=255)                         aaCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGtt                                                                                                              >  1:973929/1‑143 (MQ=255)                          aCGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTg                                                                                                             <  1:881734/143‑1 (MQ=255)                          aCGTCAGCGGTCAACACCCGCCAGCAAGGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAATCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTg                                                                                                             <  1:43178/143‑1 (MQ=255)                            gTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTggg                                                                                                           <  1:977346/143‑1 (MQ=255)                              cAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACCTTAGTTCCACAACACTAAACCTATAAGGTGGGGa                                                                                                         >  2:185147/1‑143 (MQ=255)                                gctggcAACACCCGGCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCTGCGGTTAATGTCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa                                                                                                       <  2:761289/138‑1 (MQ=255)                                gCGGTCAACACCCGCCAGCAATGTACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGaaa                                                                                                       <  2:958502/143‑1 (MQ=255)                                 cGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGCCTTTAGTTCCACAACACTACACCTATAAGTTGGGGAAAt                                                                                                      >  1:514195/1‑143 (MQ=255)                                      aaCACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGCAATACAAt                                                                                                 >  1:884457/1‑143 (MQ=255)                                      aaCACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAAt                                                                                                 <  1:416421/143‑1 (MQ=255)                                           ccGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACCGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACGTATAAGATGGGAAAAGACAACGTTcc                                                                                            >  2:895089/1‑143 (MQ=255)                                           ccGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATAAAATGtcac                                                                                            >  2:97394/1‑140 (MQ=255)                                             gCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAg                                                                                          >  1:1010101/1‑143 (MQ=255)                                                    aTGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAATTGGGGAAATACAATGTTCCAGCaagaag                                                                                   >  1:312915/1‑143 (MQ=255)                                                      ggACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGtt                                                                                 <  2:837262/143‑1 (MQ=255)                                                         cTGTATTGCGCTCTTCGTGCGTCGTGTCTGTTAAAAACTGGCGCTAATAATACAGGCGAAAGTCGAACCGCGAGGCGAGACTTGAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAcc                                                                              <  1:838432/143‑1 (MQ=255)                                                              ttGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc                                                                         >  1:607361/1‑143 (MQ=255)                                                              ttGCGCTCTTCGTGCGGCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACTACTCTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTAc                                                                         <  2:453845/143‑1 (MQ=255)                                                                gcgcTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGCAATACAATGTTCCAGCAAGAAGTTACCATTACCg                                                                       <  2:617118/143‑1 (MQ=255)                                                                  gcTCTTCGTGCGTCGCGTCTGATAAAAACTGGAGCTAACAATACAGACTAAAGTCGAACCGCCAGGCAAGACTTTAGATACACAACACTAAACCTATAAGATGGGGAAATACAATATTCCAGCAAGAAGTAACCATAACCGCt                                                                     >  2:72439/1‑143 (MQ=255)                                                                        cGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGAATTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTGCCGCTCCGAAc                                                               >  2:750476/1‑143 (MQ=255)                                                                         gTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACg                                                              <  1:796157/143‑1 (MQ=255)                                                                                   gcTGTTAATGGCTGGCGCTAACATTACAGGCTAAAGGCGAACCGCCAGGCTAGACTTTAGTTCCACAACACGAAGCCTATGAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCacac                                                    <  2:539515/142‑1 (MQ=255)                                                                                     tGTTAAAAACTGGCGCTGACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACAccc                                                  >  1:977679/1‑143 (MQ=255)                                                                                       ttAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGc                                                >  1:778510/1‑143 (MQ=255)                                                                                           aaaCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggtgttgaccgctgacgtttcg                                            <  2:306744‑M2/143‑100 (MQ=255)                                                                                             aCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc                                                                               <  1:639708/106‑1 (MQ=255)                                                                                             aCTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTAc                                                                               >  2:639708/1‑106 (MQ=255)                                                                                                 gcgcTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCCCCGAACGGTCTGCACACCCGCCCTGCTGcca                                      >  2:343323/1‑142 (MQ=255)                                                                                                    cTAACAATACAGGCTAAAGTCGAACTGCCAGGCTAGACTTTAGTTCCACAACACTGAACCCATAAGTTGGGGAAATACAATGTTCCAGCAAAAAGTTACCATTACCGCTCGCAACGGTCTGCACACCACCGCTCCTGccacgc                                   >  2:898370/1‑139 (MQ=255)                                                                                                         aaTACAGGCTAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggcgttgcccgctgacgtttcgtacgtcattaaaca                              <  2:390616‑M2/143‑114 (MQ=255)                                                                                                              aGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTCTAAGTTGGGGAAATACACTGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCTCACCCGCCCTGCTGCCCAGTTTGTAAaaga                         >  2:329128/1‑143 (MQ=255)                                                                                                                gCTAAAGTCGACCCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAaagaag                       <  2:374064/143‑1 (MQ=255)                                                                                                                  tAAAGTCGAACCGCCAGGCTAgactttagcctgtattgttagcgccagtttttaacagacgcgacgcacgaagagcgcaatacagtccattgctggcgggtgttgaccgctgacgtttcgtacgtcattaaacattatgccgc                     <  2:30656‑M2/143‑123 (MQ=255)                                                                                                                       tCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAACCCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAggg                <  1:97394/143‑1 (MQ=255)                                                                                                                               ccAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGCTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCACTGCTGCCCCGTCCGTAAAGGAAGCTAAGGCCTTCAcat        >  2:105916/1‑141 (MQ=255)                                                                                                                                  ggCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGGCTTCACTTCTg     <  2:778510/143‑1 (MQ=255)                                                                                                                                     tAGACTTTAGTTCCTCAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCCGTTTGTAAACGAAGCTAAGGGCTTCACTTCTGaac  >  2:516315/1‑142 (MQ=255)                                                                                                                                     tAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGGCTTCACTTCTGaat  >  1:132411/1‑142 (MQ=255)                                                                                                                                      |                                                                                                                                              GGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAATGTTCCAGCAAGAAGTTACCATTACCGCTCCGAACGGTCTGCACACCCGCCCTGCTGCCCAGTTTGTAAAAGAAGCTAAGGGCTTCACTTCTGAAA  >  NC_000913/2533586‑2533860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.