New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4099447	52 (1.010)	3 (0.060)	3/260	NT	5.4%	coding (802/849 nt)	rhaR	DNA‑binding transcriptional activator RhaR
	?	NC_000913	= 4099475	53 (1.040)					coding (830/849 nt)	rhaR	DNA‑binding transcriptional activator RhaR

CATCAATCAATATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCC  >  NC_000913/4099305‑4099588                                                                                                                                                |                                                                                                                                              cATCAATCAATATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCG                                                                                                                                               >  2:948706‑M1/1‑143 (MQ=255) cATCAATCAATATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCG                                                                                                                                               >  1:893602‑M1/1‑143 (MQ=255) cATCAATCAATATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCG                                                                                                                                               >  1:432335‑M1/1‑143 (MQ=255)  atcaatcaATATCTGCGACAGGGCGGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCgg                                                                                                                                              <  1:603618/143‑1 (MQ=255)  atcaatcaATATCCGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCgg                                                                                                                                              <  1:82489/143‑1 (MQ=255)   tcaatcaaTATCTGCGACAGGTCAGAGGGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCggg                                                                                                                                             <  1:569862/143‑1 (MQ=255)    caatcactAGCTGCGACCGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCGTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGa                                                                                                                                            <  1:113497/143‑1 (MQ=255)       tcaatATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGa                                                                                                                                         >  1:40680/1‑143 (MQ=255)           tatCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGCAACCGGGCTgccgcc                                                                                                                                     >  2:103487/1‑143 (MQ=255)                   aCAGGTCAGAGTGGGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGt                                                                                                                             <  1:953895/143‑1 (MQ=255)                    cAGGTCAGAGTGTGTCATGCGCAATACCTTACCCAGTAGTGCCGCCTGTTAATCAGTGATATTTCGACAGAATGTGGCTGTGAAGATAGGAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGAGGCCCAGCCAGTg                                                                                                                            >  2:313234/1‑143 (MQ=255)                      ggTCAGAGTGTGTCATGCGCCATATCTGCGCCGTCATAGCCGCCTGTTAAGCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGc                                                                                                                          <  1:903675/143‑1 (MQ=255)                      ggTCAGAGTCCGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTCCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGTTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGc                                                                                                                          <  1:106937/143‑1 (MQ=255)                       gTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCg                                                                                                                         >  2:346246/1‑143 (MQ=255)                         cAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGA‑ACACATTATATGTTGTGGGCCGTTTCCCCGGGAAACCGGGTTGACGCCCAGCCAGTGGCGTc                                                                                                                       >  1:1006691/1‑143 (MQ=255)                             gtgtgtCATGCGCATTATCTAGCCCAGCGTAGCCGCCTGTTAATCAGTGATATTTCGACCGAGTGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCAtct                                                                                                                   <  2:1006350/143‑1 (MQ=255)                               gtgtCGTGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGggatgacgccactggctgggcgtcatcccg                                                                                                                 <  1:475348‑M1/143‑31 (MQ=255)                                  tCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAAtt                                                                                                              >  1:574180/1‑143 (MQ=255)                                      gcgcAATATCTGCTCCAGCATAGCCGCCTGTTAATCAGTGATATGTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCa                                                                                                          <  1:552371/143‑1 (MQ=255)                                        gcAATATCCTCTCCAGCATAGCCGCCCGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGa                                                                                                        <  1:813307/143‑1 (MQ=255)                                        gcAATAGCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGGGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGa                                                                                                        <  1:264074/143‑1 (MQ=255)                                         cAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGagatgacgccactggctgggcgtcatcccggtttcccggg                                                                                                       >  1:875987‑M1/1‑103 (MQ=255)                                          aaTATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTCTACCCGGGAAACCGAGGCGACTCCCAGCCAGTGGCGTCATCTCAATTCGCAGaaa                                                                                                      <  1:965490/143‑1 (MQ=255)                                            tatCTCCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGa                                                                                                    <  1:563475/143‑1 (MQ=255)                                              tcttctCCAGCGTCGCGGCCTGTTGTTCAGTGTTATTTCGACCGAATGTGTCCTTGGGGTTAGTGGCTGT‑TTTTCGGTGGTGTTTCCCCGGGAAACCGGGATGACGCTCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt                                                                                                  <  2:879399/143‑1 (MQ=255)                                              tcttctCCAGCATAGCCGTCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt                                                                                                  <  1:686226/143‑1 (MQ=255)                                              tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGagatgacgccactggctgggcgtcatcccggtttcccgggtaaac                                                                                                  <  2:875987‑M1/143‑46 (MQ=255)                                              tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt                                                                                                  >  2:166970/1‑143 (MQ=255)                                              tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt                                                                                                  <  1:899553/143‑1 (MQ=255)                                              tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCGCAATTCGCAGAAAGAtt                                                                                                  >  1:166410/1‑143 (MQ=255)                                                ttctCCAGCATAGCCGCCTGTGAATCAGTGATATTTCGACCGAATGTGGCTGTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTaa                                                                                                <  2:178081/143‑1 (MQ=255)                                                   tcCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGCTAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCCGCCAGTGGCGCCATCGCAATTCGCAGAACGATTAATTc                                                                                             >  2:722728/1‑143 (MQ=255)                                                   tcCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGCAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCCGAAAGATTAAtcc                                                                                             >  2:198283/1‑141 (MQ=255)                                                    ccAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAGTAATTCg                                                                                            >  1:113788/1‑143 (MQ=255)                                                        cATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCat                                                                                        >  1:662018/1‑143 (MQ=255)                                                         aTAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatg                                                                                       >  2:5274/1‑143 (MQ=255)                                                         aTAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatg                                                                                       <  1:948706/143‑1 (MQ=255)                                                             ccgccTGTTAATCAGCGATATTTCGACCTAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatgccga                                                                                   <  1:298437/143‑1 (MQ=255)                                                                      aaTCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCcgacga                                                                          >  1:619203/1‑143 (MQ=255)                                                                        tCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATg                                                                        >  1:502178/1‑143 (MQ=255)                                                                           gTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTa                                                                     <  1:544255/143‑1 (MQ=255)                                                                           gTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGGTTACCCGCGAAACCGGGAGGACCCCCAGCCACTGGCGTCATCTCAATGCGCATAAAGATTAATTCGCCATGCCGATGCCGACGATGTTa                                                                     <  1:410101/143‑1 (MQ=255)                                                                               tagttCGAACGAATGGGGCGGTGAAGATAGGAACCAT‑GTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAgcgg                                                                 <  1:26620/140‑1 (MQ=255)                                                                                  ttCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGa                                                              <  1:389095/143‑1 (MQ=255)                                                                                         gAATGTGGGTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACaataat                                                       <  1:246944/143‑1 (MQ=255)                                                                                          aaTGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATc                                                      <  1:166970/143‑1 (MQ=255)                                                                                          aaTGTGGCTTTGAAGATAGTAACTAT‑TTTGCGGTGGTGTTTACCCTGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATc                                                      <  2:472531/143‑1 (MQ=255)                                                                                             gtgGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATcacc                                                   <  1:346246/143‑1 (MQ=255)                                                                                                   ttGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACAGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCcaacaa                                             >  2:949947/1‑143 (MQ=255)                                                                                                     gAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCCATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACGATAATCACCACACAAcc                                           >  2:711430/1‑143 (MQ=255)                                                                                                            ggagcTAT‑TCTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTc                                    <  1:321236/139‑1 (MQ=255)                                                                                                             tAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATATTCAACATATATCCGAGGCTCa                                   >  1:951405/1‑143 (MQ=255)                                                                                                              atcTAT‑TCTGCAGTGGTGCTTACCCGGCAAACCGGGATGACGCCCAGGCAGGCGCGTCATCTGAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCAACAATAATCACCACACAACCGAGGCGCaa                                  <  2:64261/141‑1 (MQ=255)                                                                                                                      tttCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGtt                           >  1:747025/1‑143 (MQ=255)                                                                                                                       ttCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTa                          <  1:884616/143‑1 (MQ=255)                                                                                                                              gtgtTTACCCGGGAAACTGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACg                   <  1:386103/143‑1 (MQ=255)                                                                                                                              gtgtTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACGACACAACCGAGCCTCAACACCGTTACCGGACg                   >  2:48518/1‑143 (MQ=255)                                                                                                                              gggtTTACCCGGCAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGTCGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACg                   <  2:40680/141‑1 (MQ=255)                                                                                                                                gtTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaaga                 <  2:875987‑M2/143‑99 (MQ=255)                                                                                                                                     cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaagatattg            >  1:875987‑M2/1‑40 (MQ=255)                                                                                                                                     cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGTTGGGAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGccgcct            >  2:10618/1‑138 (MQ=255)                                                                                                                                     cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTGAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTAGCGGACGGCGTCCt            >  1:929606/1‑143 (MQ=255)                                                                                                                                      ccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGccccg           >  2:638669/1‑141 (MQ=255)                                                                                                                                          gAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACACTAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGGCCTGcgtg       >  1:269645/1‑140 (MQ=255)                                                                                                                                              ccGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTc   <  1:912876/143‑1 (MQ=255)                                                                                                                                              ccGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTc   <  1:334829/143‑1 (MQ=255)                                                                                                                                               cGGGATGACGCCCAGCCAGTGGCGTCATCCcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaagatattgcgcacgacac  <  1:475348‑M2/143‑114 (MQ=255)                                                                                                                                                |                                                                                                                                              CATCAATCAATATCTGCGACAGGTCAGAGTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTAT‑TTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCC  >  NC_000913/4099305‑4099588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.