| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4099447 | 52 (1.010) | 3 (0.060) | 3/260 | NT | 5.4% | coding (802/849 nt) | rhaR | DNA‑binding transcriptional activator RhaR |
| ? | NC_000913 | = 4099475 | 53 (1.040) | coding (830/849 nt) | rhaR | DNA‑binding transcriptional activator RhaR | |||||
GTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGCACCAGCCCGACGAT > NC_000913/4099333‑4099613 | gtgtgtCATGCGCATTATCTAGCCCAGCGTAGCCGCCTGTTAATCAGTGATATTTCGACCGAGTGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCAtct < 2:1006350/143‑1 (MQ=255) tCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAAtt > 1:574180/1‑143 (MQ=255) gcgcAATATCTGCTCCAGCATAGCCGCCTGTTAATCAGTGATATGTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCa < 1:552371/143‑1 (MQ=255) gcAATATCCTCTCCAGCATAGCCGCCCGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGa < 1:813307/143‑1 (MQ=255) gcAATAGCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGGGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGa < 1:264074/143‑1 (MQ=255) aaTATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTCTACCCGGGAAACCGAGGCGACTCCCAGCCAGTGGCGTCATCTCAATTCGCAGaaa < 1:965490/143‑1 (MQ=255) tatCTCCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGa < 1:563475/143‑1 (MQ=255) tcttctCCAGCGTCGCGGCCTGTTGTTCAGTGTTATTTCGACCGAATGTGTCCTTGGGGTTAGTGGCTGTTTTTCGGTGGTGTTTCCCCGGGAAACCGGGATGACGCTCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt < 2:879399/143‑1 (MQ=255) tcttctCCAGCATAGCCGTCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt < 1:686226/143‑1 (MQ=255) tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt < 1:899553/143‑1 (MQ=255) tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAtt > 2:166970/1‑143 (MQ=255) tcttctCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCGCAATTCGCAGAAAGAtt > 1:166410/1‑143 (MQ=255) ttctCCAGCATAGCCGCCTGTGAATCAGTGATATTTCGACCGAATGTGGCTGTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTaa < 2:178081/143‑1 (MQ=255) tcCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGCTAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCCGCCAGTGGCGCCATCGCAATTCGCAGAACGATTAATTc > 2:722728/1‑143 (MQ=255) tcCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGCAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCCGAAAGATTAAtcc > 2:198283/1‑141 (MQ=255) ccAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGAGTAATTCg > 1:113788/1‑143 (MQ=255) cATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCat > 1:662018/1‑143 (MQ=255) aTAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatg < 1:948706/143‑1 (MQ=255) aTAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatg > 2:5274/1‑143 (MQ=255) ccgccTGTTAATCAGCGATATTTCGACCTAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCatgccga < 1:298437/143‑1 (MQ=255) aaTCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCcgacga > 1:619203/1‑143 (MQ=255) tCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATg > 1:502178/1‑143 (MQ=255) gTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTa < 1:544255/143‑1 (MQ=255) gTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGGTTACCCGCGAAACCGGGAGGACCCCCAGCCACTGGCGTCATCTCAATGCGCATAAAGATTAATTCGCCATGCCGATGCCGACGATGTTa < 1:410101/143‑1 (MQ=255) tagttCGAACGAATGGGGCGGTGAAGATAGGAACCATGTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAgcgg < 1:26620/140‑1 (MQ=255) ttCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGa < 1:389095/143‑1 (MQ=255) gAATGTGGGTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACaataat < 1:246944/143‑1 (MQ=255) aaTGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATc < 1:166970/143‑1 (MQ=255) aaTGTGGCTTTGAAGATAGTAACTATTTTGCGGTGGTGTTTACCCTGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATc < 2:472531/143‑1 (MQ=255) gtgGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATcacc < 1:346246/143‑1 (MQ=255) ttGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACAGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCcaacaa > 2:949947/1‑143 (MQ=255) gAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCCATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACGATAATCACCACACAAcc > 2:711430/1‑143 (MQ=255) ggagcTATTCTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTc < 1:321236/139‑1 (MQ=255) tAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATATTCAACATATATCCGAGGCTCa > 1:951405/1‑143 (MQ=255) atcTATTCTGCAGTGGTGCTTACCCGGCAAACCGGGATGACGCCCAGGCAGGCGCGTCATCTGAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCAACAATAATCACCACACAACCGAGGCGCaa < 2:64261/141‑1 (MQ=255) tttCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGtt > 1:747025/1‑143 (MQ=255) ttCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTa < 1:884616/143‑1 (MQ=255) gtgtTTACCCGGGAAACTGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACg < 1:386103/143‑1 (MQ=255) gtgtTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACGACACAACCGAGCCTCAACACCGTTACCGGACg > 2:48518/1‑143 (MQ=255) gggtTTACCCGGCAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGTCGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACg < 2:40680/141‑1 (MQ=255) gtTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaaga < 2:875987‑M2/143‑99 (MQ=255) cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaagatattg > 1:875987‑M2/1‑40 (MQ=255) cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGTTGGGAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGccgcct > 2:10618/1‑138 (MQ=255) cccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTGAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTAGCGGACGGCGTCCt > 1:929606/1‑143 (MQ=255) ccGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGccccg > 2:638669/1‑141 (MQ=255) gAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACACTAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGGCCTGcgtg > 1:269645/1‑140 (MQ=255) ccGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTc < 1:334829/143‑1 (MQ=255) ccGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTc < 1:912876/143‑1 (MQ=255) cGGGATGACGCCCAGCCAGTGGCGTCATCCcggtttcccgggtaaacaccaccgaaaaatagttactatcttcaaagccacattcggtcgaaatatcactgattaacaggcggctatgctggagaagatattgcgcacgacac < 1:475348‑M2/143‑114 (MQ=255) ggATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAACTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCAc < 1:88926/143‑1 (MQ=255) gACGCCCAGCCAGTGGCGTCATCTCACTTCGCAGAAAGATCACATCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCCCACACCCGCGGCTCAACACCGTTACCGGCCGGCGTCCGGCCTTGTTCCACTCtt > 1:966377/1‑143 (MQ=255) gcGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGTGGCTTAACACTGTTACCGGACGGCGTCCTGCATTGTTCCACTCttt < 2:893602/142‑1 (MQ=255) ccagccagTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGc > 1:224691/1‑143 (MQ=255) cagccagTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGCa > 1:260434/1‑143 (MQ=255) tGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGAGCAACGCCGGTACCCGACGCCGGCCTGCATTGGTCCACTCTTTCAGCCCCCGcca > 2:606038/1‑142 (MQ=255) tGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCAGATGACGACGATGTCAGCTGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTTCACTCTTTCAGCACCAGccc < 2:370036/143‑1 (MQ=255) tGGCGTCATCTCAAGTCGCAGAAAGAGTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGCACCAGccc < 1:198283/143‑1 (MQ=255) tCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCGCAACACCGTGACCTGACGGCGTCCTGCATTGTTCCACTCTTTCAGCACCAGCCcgacga > 2:353841/1‑143 (MQ=255) cATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGCACCAGCCCGACGAt > 1:782112/1‑143 (MQ=255) | GTGTGTCATGCGCAATATCTTCTCCAGCATAGCCGCCTGTTAATCAGTGATATTTCGACCGAATGTGGCTTTGAAGATAGTAACTATTTTTCGGTGGTGTTTACCCGGGAAACCGGGATGACGCCCAGCCAGTGGCGTCATCTCAATTCGCAGAAAGATTAATTCGCCATGCCGATGCCGACGATGTTAGCGGCGACAATAATCACCACACAACCGAGGCTCAACACCGTTACCGGACGGCGTCCTGCATTGTTCCACTCTTTCAGCACCAGCCCGACGAT > NC_000913/4099333‑4099613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |