New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4545723	48 (0.930)	3 (0.060)	3/246	NT	6.1%	coding (628/2637 nt)	fimD	type I fimbriae usher protein
	?	NC_000913	= 4545737	47 (0.970)					coding (642/2637 nt)	fimD	type I fimbriae usher protein

GGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCG  >  NC_000913/4545581‑4545863                                                                                                                                               |                                                                                                                                             ggCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAA                                                                                                                                              <  2:411250‑M1/143‑1 (MQ=255)  gCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAGTAGTGTACAGCATCGGCTTGGCGGTCACCGCCACAATGCATATTTaaa                                                                                                                                             >  2:4941/1‑143 (MQ=255)        aTGAGTAAGCGCGCGCGTGGTTATATGCCTCAGGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAGTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACa                                                                                                                                       <  2:400403/143‑1 (MQ=255)          gAGTAAGCGCGGGTGTGGTTAGATTCCTCCGGAGTTATGGGAGCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACaga                                                                                                                                     <  2:627671/143‑1 (MQ=255)             tAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGACTCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCCACAGAGTg                                                                                                                                  >  2:460096/1‑143 (MQ=255)             tAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCGCGATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACGTACAGAGTg                                                                                                                                  >  1:382221/1‑143 (MQ=255)                  gcgcgcgTGTTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGtta                                                                                                                             >  2:150741‑M2/1‑140 (MQ=255)                    gctcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGTATTGCTCAATTATTATTTCTGCGTATATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGTTTaaa                                                                                                                           <  1:217330/140‑1 (MQ=255)                    gcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGTCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTAGAGAATAGGATTGGGGGTAACAGACATTATGCATATTTAAAGATACAGAGGGGGtgaaa                                                                                                                           <  2:546349‑M2/143‑6 (MQ=255)                    gcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAcccactctgtaggtttgaa                                                                                                                           <  2:971866‑M1/143‑20 (MQ=255)                        gTGGTTATATGCCTCCTGAGTTATGGGATCCCGGGATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATAtt                                                                                                                       <  2:225863/143‑1 (MQ=255)                         tGGTTATATTCCTACTGAGTTATGAGATCCCGGTATTAATGCCGGATTGCTCAATTATAATATCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTg                                                                                                                      <  1:419805/143‑1 (MQ=255)                                 ttCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGGGGGTTAAATATTGGTGCGTgg                                                                                                              >  2:284155/1‑143 (MQ=255)                                  tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTAGGTTAAATATTGGTGCGTGGc                                                                                                             >  2:590974/1‑143 (MQ=255)                                  tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCAATATGCATATTTAAACCTACAGAGTGGGATAGACATTGGAGTGTGGc                                                                                                             >  2:963494/1‑143 (MQ=255)                                  tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGGGGACAGAATCGGATTGGGGGTGACAGCCATCATGGCTATTTTTACCTATAGAGTGGGTCAAATAGTGGTCCGTGGc                                                                                                             >  1:423283/1‑143 (MQ=255)                                     tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGACATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTAAAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                          >  1:702983/1‑143 (MQ=255)                                     tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATGTTGGTGCGTGGCggt                                                                                                          >  1:224548/1‑141 (MQ=255)                                     tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                          >  2:334355/1‑143 (MQ=255)                                     tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCGCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                          <  1:913436/143‑1 (MQ=255)                                          aGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTAcgc                                                                                                     <  2:506401/143‑1 (MQ=255)                                            ttATTGGATCCCGGTATTAACGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGCATTGGGGGTAACAGCCATTATACATATTTAACCCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                   <  1:64091/143‑1 (MQ=255)                                            ttATGGGATCCCGGTATTAATGCCGGATTGATCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                   <  1:667294/143‑1 (MQ=255)                                            ttATGGGATCACGGTATTCATGCCGGATTGCTCAATTATAGTTTCTGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGTGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                   <  1:861324/143‑1 (MQ=255)                                                   aTCCCGGTATTAATGCCGGATTGCTCAATTAGAAGTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacc                                                                                            <  2:504164/143‑1 (MQ=255)                                                    tCCCTGTATTAAGTCCGGATTGCTCAATTATAATTTCAGCTGAATTATTCTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCCACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                           <  2:49139/143‑1 (MQ=255)                                                    tCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTGCAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                           <  1:450150/143‑1 (MQ=255)                                                    tCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                           >  1:731069/1‑143 (MQ=255)                                                      ccGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATaccacc                                                                                         >  2:528405/1‑143 (MQ=255)                                                       ccggaTTAATGCCGTATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCt                                                                                        <  1:574568/139‑1 (MQ=255)                                                            ttAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAcccactctgtaggtttaaatat                                                                                                                        <  1:875076‑M1/106‑23 (MQ=255)                                                            ttAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAcccactctgtaggtttaaatat                                                                                                                        >  2:875076‑M1/1‑84 (MQ=255)                                                              aaTGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGGTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTta                                                                                 >  1:248932/1‑143 (MQ=255)                                                                tGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCAATATGAATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTtata                                                                               >  1:604607/1‑143 (MQ=255)                                                                 gCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATaa                                                                              <  1:404864/143‑1 (MQ=255)                                                                 gCCGGAGTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAGTCTGATTGGGGGTAACAGCCATTATGCATATTTAACCCCACAGCGTGGGTTAAATATTGGTGCGTGGCGTTTACCCGACAATACCACCTGGAGTTATaa                                                                              <  1:331009/143‑1 (MQ=255)                                                                           tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACCTCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                    <  2:987214/143‑1 (MQ=255)                                                                           tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                    >  1:987214/1‑143 (MQ=255)                                                                           tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                    <  2:616103/143‑1 (MQ=255)                                                                            cAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACa                                                                   <  1:856391/143‑1 (MQ=255)                                                                              aTTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTTGGGGTAACAGCCGTTATGCATATTTAAACCAACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGAAACTACCGCGTGGAGTTATAAGAGTAGCGACaac                                                                 >  2:710922/1‑141 (MQ=255)                                                                                tataATGTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGatc                                                               <  1:149552/143‑1 (MQ=255)                                                                                        cAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCCTACTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTa                                                       <  1:326903/143‑1 (MQ=255)                                                                                             gAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCaaa                                                  <  1:307609/143‑1 (MQ=255)                                                                                             gAAATAGTGTACAGAATCGGACTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCaaa                                                  <  1:308524/143‑1 (MQ=255)                                                                                                aTAGTGTACAGAAGCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaat                                               <  1:397479/143‑1 (MQ=255)                                                                                                   gtgtACAGAATCGGATTGGGGGTAACAGCCATTATGCATATATAAACCTACAGAGTCGGTTAAATATTGTTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaataaa                                            <  1:38099/143‑1 (MQ=255)                                                                                                    tgtACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaataaat                                           <  2:527097/143‑1 (MQ=255)                                                                                                         aGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCCGGTAGCAAAAACAAATGgcag                                      >  2:893922/1‑143 (MQ=255)                                                                                                          gcagcGGATTGGGGGTAACAGCCACTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGgcagc                                     <  2:569013/139‑1 (MQ=255)                                                                                                               ggATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATc                                <  1:446613/143‑1 (MQ=255)                                                                                                                        gTAACAGCCATTATGCAGATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTgg                       <  2:69931/143‑1 (MQ=255)                                                                                                                         tAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGTCAATACCAACTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCACAACAATACCTGGc                      >  2:691644/1‑143 (MQ=255)                                                                                                                                  ttATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATAGCAATCCCTGGCTTGAGCgag             >  2:289885/1‑143 (MQ=255)                                                                                                                                        tttgttAATCCTAAAGAGCGGGTTAAATATTGCGGCGTGCCGATGACGCAAGAATACCACCTGGCATTATAACAGTAGCGACACAGAAGATGGTAGAAAAAATAAATGGCAGCATATCAATTCCTGGCGTGATCGAGACataa       <  2:81242/139‑1 (MQ=255)                                                                                                                                        atatTTAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaa                                            <  1:875076‑M2/106‑85 (MQ=255)                                                                                                                                        atatTTAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaa                                            >  2:875076‑M2/1‑22 (MQ=255)                                                                                                                                        atatTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACataa       >  1:307810/1‑143 (MQ=255)                                                                                                                                           tttCAccccctctgtatctttaaatatgcataatgtctgttacccccaatcctattctctacactatttccgctgaaattataattgagcaatccgacattaataccgggatcccataactcaggaggaatataaccacgcgc    <  2:546349‑M1/143‑139 (MQ=255)                                                                                                                                           tttAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATAGCAATACCTGGCTTGAGCGAGACATAATAc    >  2:150206/1‑143 (MQ=255)                                                                                                                                           ttcAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataaccacgcgc    <  2:971866‑M2/143‑125 (MQ=255)                                                                                                                                             tAAcccactctgtaggtttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataaacacgcgcgc  >  2:150741‑M1/1‑3 (MQ=255)                                                                                                                                               |                                                                                                                                             GGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCG  >  NC_000913/4545581‑4545863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.