New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4545723	48 (0.930)	3 (0.060)	3/246	NT	6.1%	coding (628/2637 nt)	fimD	type I fimbriae usher protein
	?	NC_000913	= 4545737	47 (0.970)					coding (642/2637 nt)	fimD	type I fimbriae usher protein

GCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCGTTACGTTCCCGGCTGA  >  NC_000913/4545598‑4545879                                                                                                                                            |                                                                                                                                               gcgcgcgTGTTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGtta                                                                                                                                             >  2:150741‑M2/1‑140 (MQ=255)   gctcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGTATTGCTCAATTATTATTTCTGCGTATATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGTTTaaa                                                                                                                                           <  1:217330/140‑1 (MQ=255)   gcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGTCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTAGAGAATAGGATTGGGGGTAACAGACATTATGCATATTTAAAGATACAGAGGGGGtgaaa                                                                                                                                           <  2:546349‑M2/143‑6 (MQ=255)       gTGGTTATATGCCTCCTGAGTTATGGGATCCCGGGATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATAtt                                                                                                                                       <  2:225863/143‑1 (MQ=255)        tGGTTATATTCCTACTGAGTTATGAGATCCCGGTATTAATGCCGGATTGCTCAATTATAATATCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTg                                                                                                                                      <  1:419805/143‑1 (MQ=255)                ttCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGGGGGTTAAATATTGGTGCGTgg                                                                                                                              >  2:284155/1‑143 (MQ=255)                 tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTAGGTTAAATATTGGTGCGTGGc                                                                                                                             >  2:590974/1‑143 (MQ=255)                 tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCAATATGCATATTTAAACCTACAGAGTGGGATAGACATTGGAGTGTGGc                                                                                                                             >  2:963494/1‑143 (MQ=255)                 tcctccTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGGGGACAGAATCGGATTGGGGGTGACAGCCATCATGGCTATTTTTACCTATAGAGTGGGTCAAATAGTGGTCCGTGGc                                                                                                                             >  1:423283/1‑143 (MQ=255)                    tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGACATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTAAAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                                          >  1:702983/1‑143 (MQ=255)                    tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATGTTGGTGCGTGGCggt                                                                                                                          >  1:224548/1‑141 (MQ=255)                    tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                                          >  2:334355/1‑143 (MQ=255)                    tcctGAGTTATGGGATCCCGGTATTAATGCCGGATTGCGCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGtt                                                                                                                          <  1:913436/143‑1 (MQ=255)                         aGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTAcgc                                                                                                                     <  2:506401/143‑1 (MQ=255)                           ttATTGGATCCCGGTATTAACGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGCATTGGGGGTAACAGCCATTATACATATTTAACCCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                                   <  1:64091/143‑1 (MQ=255)                           ttATGGGATCCCGGTATTAATGCCGGATTGATCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                                   <  1:667294/143‑1 (MQ=255)                           ttATGGGATCACGGTATTCATGCCGGATTGCTCAATTATAGTTTCTGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGTGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGa                                                                                                                   <  1:861324/143‑1 (MQ=255)                                  aTCCCGGTATTAATGCCGGATTGCTCAATTAGAAGTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacc                                                                                                            <  2:504164/143‑1 (MQ=255)                                   tCCCTGTATTAAGTCCGGATTGCTCAATTATAATTTCAGCTGAATTATTCTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCCACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                                           <  2:49139/143‑1 (MQ=255)                                   tCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTGCAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                                           <  1:450150/143‑1 (MQ=255)                                   tCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATacca                                                                                                           >  1:731069/1‑143 (MQ=255)                                     ccGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATaccacc                                                                                                         >  2:528405/1‑143 (MQ=255)                                      ccggaTTAATGCCGTATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCt                                                                                                        <  1:574568/139‑1 (MQ=255)                                             aaTGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGGTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTta                                                                                                 >  1:248932/1‑143 (MQ=255)                                               tGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCAATATGAATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTtata                                                                                               >  1:604607/1‑143 (MQ=255)                                                gCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATaa                                                                                              <  1:404864/143‑1 (MQ=255)                                                gCCGGAGTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAGTCTGATTGGGGGTAACAGCCATTATGCATATTTAACCCCACAGCGTGGGTTAAATATTGGTGCGTGGCGTTTACCCGACAATACCACCTGGAGTTATaa                                                                                              <  1:331009/143‑1 (MQ=255)                                                          tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACCTCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                                    <  2:987214/143‑1 (MQ=255)                                                          tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                                    >  1:987214/1‑143 (MQ=255)                                                          tCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGAc                                                                                    <  2:616103/143‑1 (MQ=255)                                                           cAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACa                                                                                   <  1:856391/143‑1 (MQ=255)                                                             aTTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTTGGGGTAACAGCCGTTATGCATATTTAAACCAACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGAAACTACCGCGTGGAGTTATAAGAGTAGCGACaac                                                                                 >  2:710922/1‑141 (MQ=255)                                                               tataATGTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGatc                                                                               <  1:149552/143‑1 (MQ=255)                                                                       cAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCCTACTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTa                                                                       <  1:326903/143‑1 (MQ=255)                                                                            gAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCaaa                                                                  <  1:307609/143‑1 (MQ=255)                                                                            gAAATAGTGTACAGAATCGGACTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCaaa                                                                  <  1:308524/143‑1 (MQ=255)                                                                               aTAGTGTACAGAAGCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaat                                                               <  1:397479/143‑1 (MQ=255)                                                                                  gtgtACAGAATCGGATTGGGGGTAACAGCCATTATGCATATATAAACCTACAGAGTCGGTTAAATATTGTTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaataaa                                                            <  1:38099/143‑1 (MQ=255)                                                                                   tgtACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAaaataaat                                                           <  2:527097/143‑1 (MQ=255)                                                                                        aGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCCGGTAGCAAAAACAAATGgcag                                                      >  2:893922/1‑143 (MQ=255)                                                                                         gcagcGGATTGGGGGTAACAGCCACTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGgcagc                                                     <  2:569013/139‑1 (MQ=255)                                                                                              ggATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATc                                                <  1:446613/143‑1 (MQ=255)                                                                                                       gTAACAGCCATTATGCAGATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTgg                                       <  2:69931/143‑1 (MQ=255)                                                                                                        tAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGTCAATACCAACTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCACAACAATACCTGGc                                      >  2:691644/1‑143 (MQ=255)                                                                                                                 ttATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATAGCAATCCCTGGCTTGAGCgag                             >  2:289885/1‑143 (MQ=255)                                                                                                                       tttgttAATCCTAAAGAGCGGGTTAAATATTGCGGCGTGCCGATGACGCAAGAATACCACCTGGCATTATAACAGTAGCGACACAGAAGATGGTAGAAAAAATAAATGGCAGCATATCAATTCCTGGCGTGATCGAGACataa                       <  2:81242/139‑1 (MQ=255)                                                                                                                       atatTTAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaa                                                            <  1:875076‑M2/106‑85 (MQ=255)                                                                                                                       atatTTAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaa                                                            >  2:875076‑M2/1‑22 (MQ=255)                                                                                                                       atatTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACataa                       >  1:307810/1‑143 (MQ=255)                                                                                                                          tttAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATAGCAATACCTGGCTTGAGCGAGACATAATAc                    >  2:150206/1‑143 (MQ=255)                                                                                                                          ttcAAACCTACAGAGTGGGttaaatatgcataatggctgttacccccaatccgattctgtacactatttccgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataaccacgcgc                    <  2:971866‑M2/143‑125 (MQ=255)                                                                                                                               aCCGACGGAGTGGGGGAAATATTGGTGCGTGGGGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCGTTa               <  1:393330/143‑1 (MQ=255)                                                                                                                                ccTACAGAGTGGGTTAAATATTGGTGCGTGGTGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCGTTAc              <  2:604607/143‑1 (MQ=255)                                                                                                                                 cTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGCGCGAGACATAATACCGTTACg             >  1:424826/1‑143 (MQ=255)                                                                                                                                      gagTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACCTAATACCGTTACGTGccc        >  2:653619/1‑143 (MQ=255)                                                                                                                                         tGGGTCAAAGATTGGTGCGGTGCGTTTAGGTGACAATACAACCTGGAGTTATAACAGTAGCGACAGATCAGCTGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGATACATAATACCGTTACGTTCCCGGc     <  2:651502/143‑1 (MQ=255)                                                                                                                                            gTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCTCGACATAATACCGTTACGTACCCGGCTGa  >  1:901493/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                               GCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGGGTAACAGCCATTATGCATATTTAAACCTACAGAGTGGGTTAAATATTGGTGCGTGGCGTTTACGCGACAATACCACCTGGAGTTATAACAGTAGCGACAGATCATCAGGTAGCAAAAATAAATGGCAGCATATCAATACCTGGCTTGAGCGAGACATAATACCGTTACGTTCCCGGCTGA  >  NC_000913/4545598‑4545879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.