New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 239659	44 (0.850)	3 (0.060)	3/254	NT	6.5%	coding (531/771 nt)	yafV	2‑oxoglutaramate amidase
	?	NC_000913	= 239703	44 (0.880)					coding (487/771 nt)	yafV	2‑oxoglutaramate amidase

ATCACCCGGCTGTCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCTTTATAATGTAGATGCTCA  >  NC_000913/239561‑239845                                                                                                                                               |                                                                                                                                               aTCGCCCGGCCGACACCGCGAGAATGGCAGCCGGTGCCATCGCTGCCGACGCGATCGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGc                                                                                                                                                <  1:208442/143‑1 (MQ=255)   cgcccggCTGTCACCGCGTTAACGGCCGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGCTTCTCAATCGCGCGGGCCGTCGGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCga                                                                                                                                              >  2:170101‑M2/3‑141 (MQ=255)   cACCCGGCTGCCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCAGCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCga                                                                                                                                              >  1:161647‑M2/1‑141 (MQ=255)     cccGGCTGCCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCgacg                                                                                                                                            >  1:207734‑M2/1‑139 (MQ=255)      ccGGCTGTCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGGTGGCgccgt                                                                                                                                           <  1:47693‑M2/143‑6 (MQ=255)           tGTCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAgg                                                                                                                                      <  1:611252/143‑1 (MQ=255)               aCCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGAGCGGGCCGTCAGCAATGCCTGCCAGTGCAGGGAGCGCGGGCCAGGCCAGTTGGCGACGTACAgcgagg                                                                                                                                  >  1:812156/1‑138 (MQ=255)                 cgcgATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCACTCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGCGCCGGCCAGTCGCCgacgtcccgcgcgagc                                                                                                                                <  2:913963‑M2/143‑17 (MQ=255)                 cgcgATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACCGGGCGAgg                                                                                                                                >  2:805170/1‑143 (MQ=255)                     acaaTGGCAGCCCTGGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATGCTCAATCGCGCGGGCCGCCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCAt                                                                                                                            <  1:201640/141‑1 (MQ=255)                       aaTGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCCTACGGCCACAGACGCCTGAGTCTCAATCGCGCGGGCCGGCAGCAATGCCGGCCGGTGCCGGGGGCGCGGGGCGAGCCAGTTGGCGACGGGCAGGGGGAggggacaa                                                                                                                          >  2:310789/1‑137 (MQ=255)                            cAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATCCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGtt                                                                                                                     <  1:566636/143‑1 (MQ=255)                             ggCCGTCGCCGGCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCGATCGCGCGGGCCGTCAGCAATGCCGGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTg                                                                                                                    <  2:366915/142‑1 (MQ=255)                                    gCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTgc                                                                                                             <  1:699430/143‑1 (MQ=255)                                     ccAGCGCTGCCGACGCGATGGCATCCCGCCACATACGCCTGATGCGCAGTCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTgcg                                                                                                            <  2:759597/143‑1 (MQ=255)                                      cATAGCTGCCGGCGCGATCGCATCCCGCCACATACGCCTGATTCTCAAGCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCGAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTgcgc                                                                                                           <  2:79231/143‑1 (MQ=255)                                                 aCGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAgg                                                                                                >  2:33049/1‑143 (MQ=255)                                                      aTTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACCCAGGCAAAc                                                                                           >  1:711539/1‑143 (MQ=255)                                                          cATCCCGCCACATACGCCTGATTCTCAATCGTGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTaa                                                                                       <  1:579324/143‑1 (MQ=255)                                                           aTCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGCGATCGCGCGACCACACAGGCAAACGTagc                                                                                      >  2:977341/1‑141 (MQ=255)                                                            tCCCGGCACATACGCCTGACTCTCAATCGCGCGGGCCGTCAGCACTGCCTCCCAGTGCAGACACCGCGGACCAGGCCAGTCAGCGACGTCCACGCCGAGACACTGATCGTTAAGATTCCGCCACCACACAGGAACACgccccc                                                                                     >  2:843193/1‑138 (MQ=255)                                                             tgcGCCACGTACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTc                                                                                    <  1:623345/141‑1 (MQ=255)                                                                gCCACATACGGTGGATGCGCAATCGCGCGGGCCGTCAGCAGTGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTa                                                                                 <  2:273559/143‑1 (MQ=255)                                                                gCCACATACGCCTTATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTa                                                                                 <  1:21508/143‑1 (MQ=255)                                                                      tACGCCTAATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGCGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCacac                                                                           <  1:642394/143‑1 (MQ=255)                                                                          ccTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTGCGGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACCCCAGc                                                                       >  2:881505/1‑143 (MQ=255)                                                                                 ctcAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAGAACGTAAGTCGTAGCGCACCAGCGGCaaaa                                                                >  1:99458/1‑143 (MQ=255)                                                                                  tcAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCCACGAACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACAACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCaacac                                                               >  2:169386/1‑140 (MQ=255)                                                                                   cAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGAGCGACCACGGAGGAACACGCACGTCGTAGCACACCAGCGGCAAAATa                                                              >  1:375591/1‑143 (MQ=255)                                                                                    aaTCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATAc                                                             <  1:564504/143‑1 (MQ=255)                                                                                              gCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCcgcg                                                   >  2:86692/1‑143 (MQ=255)                                                                                               ccGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGGGCTTGCGCGACCACACAGGAAAACGTAAGTCGTAGCGCACCAGCGGCAAAACACGCCACCCgcgc                                                  >  2:66952/1‑143 (MQ=255)                                                                                                cGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCgacggcccgcgcgattgagaatcaggcgtatgtggcgggatgcaatcgcgtcggcagcgatggcaacggctg                                                                        <  1:27513‑M2/120‑73 (MQ=255)                                                                                                cGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCgacggcccgcgcgattgagaatcaggcgtatgtggcgggatgcaatcgcgtcggcagcgatggcaacggctg                                                                        >  2:27513‑M2/1‑48 (MQ=255)                                                                                                  tCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGCGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCAAACCAGCGGCAAAATACGCCAGCGGCGccct                                               >  2:772500/1‑141 (MQ=255)                                                                                                  tCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGccct                                               >  1:705770/1‑141 (MQ=255)                                                                                                  tCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTGGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCAt                                               >  1:414992/1‑143 (MQ=255)                                                                                                    aGCAATGCCTGCCAGTGCAGATAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTc                                             <  1:900683/143‑1 (MQ=255)                                                                                                      cAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCca                                           >  2:198279/1‑143 (MQ=255)                                                                                                      cAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCca                                           <  1:110175/143‑1 (MQ=255)                                                                                                              gccAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGGCATTCCACAATCAcg                                   >  2:426169/1‑142 (MQ=255)                                                                                                               ccAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAGTCGTTGAGATTGGGCGACGACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTc                                  >  1:529099/1‑143 (MQ=255)                                                                                                                     cAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTACGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACACTCACTCGCGCAt                            >  2:173163/1‑143 (MQ=255)                                                                                                                        agagCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGCTGAGATCGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCACAACCCGCCGGGGGGGCCATTCCACACACACgcgcgcccagc                         >  2:713349/1‑138 (MQ=255)                                                                                                                         gagCGCGGAGCCGGCCAGTGGGCGACGTGCAGGGCGAGGTCATAATCGCTGAGATTGCGCGACCACACAGGAAAACGTCAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGcc                        <  2:596116/143‑1 (MQ=255)                                                                                                                           gcgcGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCg                      <  1:538512/143‑1 (MQ=255)                                                                                                                            cgcgGAGCAGGCCGGTTGGCGACGTACAGCGCGAGGTCATAATCGTGGAGATCGCGCGACCACACAGGCACACGTAAGTCGTAGCACACCAGCGGCACAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGc                     <  2:905535/143‑1 (MQ=255)                                                                                                                              cgGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGcaa                   >  1:837943/1‑141 (MQ=255)                                                                                                                              cgGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCtt                   >  1:278945/1‑143 (MQ=255)                                                                                                                                 aGCAGGCCAGTTGGCGACGTACAGGGCGAGGACATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCTTtat                >  1:588598/1‑143 (MQ=255)                                                                                                                                   cAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACACTCCCTCGCTCCCTGCCCGCTTcatca              >  1:589/1‑141 (MQ=255)                                                                                                                                   cAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCTTTATaa              >  1:750661/1‑143 (MQ=255)                                                                                                                                     ggCCAGTGGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCTTTATAATg            <  1:128383/143‑1 (MQ=255)                                                                                                                                               cGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATAACTCGCGCATTGCCCGCCTTATAATGTACATGCTCa  >  2:584596/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                               ATCACCCGGCTGTCACCGCGATAATGGCAGCCGTTGCCATCGCTGCCGACGCGATTGCATCCCGCCACATACGCCTGATTCTCAATCGCGCGGGCCGTCAGCAATGCCTGCCAGTGCAGAGAGCGCGGAGCAGGCCAGTTGGCGACGTACAGGGCGAGGTCATAATCGTTGAGATTGCGCGACCACACAGGAAAACGTAAGTCGTAGCACACCAGCGGCAAAATACGCCAGCCGCGCCATTCCACAATCACTCGCGCATTGCCCGCTTTATAATGTAGATGCTCA  >  NC_000913/239561‑239845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.