New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1744 (40.730)	260/278	0.0	97.3%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	48 (1.110)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566636‑566903                                                                                                                                              |                                                                                                                               gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                                                                                               >  1:475870/1‑143 (MQ=255)  aaGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGGCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACGGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                              <  2:368568/143‑1 (MQ=255)          aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCGAGCGGAGGTTGATCTTatcg                                                                                                                      >  1:364872/1‑140 (MQ=255)              aTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTGACCCAGCa                                                                                                                  >  2:88260/1‑143 (MQ=255)                tAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACGGGCGCAACCGTAATCTGATCTTACCCAGCAAt                                                                                                                >  1:634098/1‑143 (MQ=255)                 aaaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTCCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGAGTTAGTGATCTCAACCGTAATCTGATCTTACCCAGCCATa                                                                                                               >  2:164677/1‑143 (MQ=255)                  aaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAg                                                                                                              >  2:531709/1‑143 (MQ=255)                      tAAGTTCGGACCGAAACGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCACTACCTGGGGACGCATAAGAGCTTCTGTGCACATGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTTATCGTACCCAGCAATAGTGGa                                                                                                          <  1:74705/143‑1 (MQ=255)                        aGTCCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCCTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGaca                                                                                                        <  1:136249/143‑1 (MQ=255)                                cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                                                                                                >  1:530643/1‑143 (MQ=255)                                 cagaaGGAGCAAGTGCATGACTGGCCAAGAGGCAACTAGTCAGTGCCTGCGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCATCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                               <  2:141834/140‑1 (MQ=37)                                   aaaGGAGCAAGTGTATGACGGGCAAAGAGGCCATTATTCATGACCTCGGACGGCACCAGCGCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                             <  1:369486/143‑1 (MQ=37)                                   aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGt                                                                                             >  1:504425/1‑143 (MQ=255)                                   aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                             >  1:229863/1‑143 (MQ=255)                                         gCAGGTGTATGACGGGTAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACCTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa                                                                                       <  2:344907/143‑1 (MQ=255)                                         gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGaaa                                                                                       >  1:364650/1‑143 (MQ=255)                                              tgtAGGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                  <  2:311662/143‑1 (MQ=255)                                                tATGACGGGCAAAGAGGCAATGATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                <  2:600901/143‑1 (MQ=255)                                                  ggACGGGCACAGGGGCAATTACTCATTCCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGCTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                              <  2:495382/142‑1 (MQ=37)                                                      gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACGGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGGTAAGTGAGGAAACACACAGTAaga                                                                          >  1:735278/1‑143 (MQ=38)                                                         cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt                                                                       <  1:531709/143‑1 (MQ=255)                                                                   cttattCGGTACCTGGGGACGCATAGGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg                                                             <  2:6491/142‑1 (MQ=255)                                                                            tcccTGGCGCCGCATATGAGCTTCTGTGCACAGGTCGTTCCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                    <  2:86395/141‑1 (MQ=18)                                                                              cccggggACGCATAAGAGCTTCGCGGCACAGGAGGTTGCCGCGGTAACAGGCGCAAGCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                  <  2:163268/140‑1 (MQ=18)                                                                                tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                >  1:20883/1‑143 (MQ=255)                                                                                  gggACGTATAAGGGCCTATGTGCACGGGAGGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa                                              <  2:313799/143‑1 (MQ=18)                                                                                  gcgccGCATAAGCGCTTCGGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa                                              <  1:319465/139‑1 (MQ=255)                                                                                    gACGCATAAGGGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                            <  1:85125/143‑1 (MQ=255)                                                                                             gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCAGTaaaaa                                   >  1:118500/1‑143 (MQ=255)                                                                                                       gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                         <  1:64104/143‑1 (MQ=255)                                                                                                                 ttGCCGCGGACAACGGCGCAATCGTAAGCTGATATTACCCGGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc               <  2:517863/143‑1 (MQ=11)                                                                                                                 ctGCCGCGGTCACAGGCGCAACCGTAATCTGACCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc               <  1:208596/142‑1 (MQ=255)                                                                                                                   gCCGCGGTATCAGGCCCAACCGTAATCTTATCCTACCAAGCAATAGTGAACACGACGATAAATGCGTAATCTCTCAGTCAGAGGTGCCTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt             <  2:693938/143‑1 (MQ=14)                                                                                                                     cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCGGTAAACAGCATTGGCCTGa           >  1:631921/1‑143 (MQ=255)                                                                                                                         gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt       <  1:88260/143‑1 (MQ=255)                                                                                                                            aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTTAATAACCCCGTAAACAGCATTCGCCTGAATTTCGc    <  2:530643/143‑1 (MQ=255)                                                                                                                             cAGGCGCTACCGTAATCTGATCTTACCCGGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa   <  2:542910/143‑1 (MQ=255)                                                                                                                             cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGATATGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa   <  1:796167/143‑1 (MQ=255)                                                                                                                              atgcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg  >  1:798753/3‑143 (MQ=25)                                                                                                                              aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGACTAAGTGAGGAAACTCTCAGTCAGAGGTGGCTCACATGGCGGAAACAGTATCAACGAGTAAAAAACCCCGTAAACAGCATTCGCATGAATTTCGCAg  >  1:56301/1‑143 (MQ=11)                                                                                                                                              |                                                                                                                               GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566636‑566903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.