New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 57247140 (0.880)11 (0.330)
+TGATCTTACCCAGCAATAGTGGACACGCGGCTAA		 8/196 NT 33.1% coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein
?NC_000913 = 2170235 20 (0.440)noncoding (65/1258 nt) IS3 repeat region

CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572332‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG  <  NC_000913/2170235‑2170198
                                                                                                                                            ||||||||||||||||||||||||||||||||||                                      
cacCTCCGGTGACTTCTGCGGTAACCGGGGCCTTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA                                                                       <  1:841246/140‑1
 aacccgGGTGACTTCTGCGCTAAACGGGGGCGGTTATGCGCACATACAACCCAAGCTCTCTTCGCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT                                                                      <  1:155110/137‑1
  tctgCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATC                                                                     <  2:120434/139‑1
         tgcCTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAGCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA                                                              <  2:380659/140‑1
         tcacgTCTGCGCTAAACGGGGACGTTTATGCGCACACACAATCCAAACTCTCTACTCCCTTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCAGCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA                                                              <  1:741016/138‑1
          gaattaTGCGCTAAACCGGGACGTTTATGCGCACATACAATCCAAACCCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAG                                                             <  2:861426/137‑1
           accTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTCGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGC                                                            <  1:106082/140‑1
               cttCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCCTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGCGGAAGCGTGAACTGATCTTACCCAGCAATA                                                        <  2:725861/140‑1
                 gccctcAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT                                                      <  1:459059/137‑1
                 gccCTAAACGGCGACGTCTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT                                                      <  1:70843/140‑1
                         cgtGGACGTTTATGCGCACATACGATCCAAACACTCTTCTCCCTCCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                              <  1:615893/140‑1
                         cgtGGACGTTTATGCGCACATACAGTCCAATCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                              <  2:29591/140‑1
                         cgtGGACGTTTATGCGCACATACAATCCAAACTCTCTGCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                              <  1:777971/140‑1
                         cggcggCGTTTAGGCGCCCATACAATCCAAACTCTCTTCTCCCTGCACCGCTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC                                              <  2:454547/137‑1
                               cgcTTATGCGCACATTCAATCCTAACTCTCTTCTCCCTTCACAGATGCTGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA                                        <  2:820504/140‑1
                                 ttcATGCGCACATCCAATCCAACCTCTCTTCTCCCTTCACAGATGCAGCAATGCACCTGCAATTCTTTGCATCTAGCGTTTTACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT                                      <  1:672171/140‑1
                                   tagGCGCACATACCAGCCTAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGGGGACACGCGGCTAAGTGA                                    <  1:68131/140‑1
                                   tacGCGCACATACAATCCAAACTCTCTTCTCCCTTCACACATGCAGAGATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTCCGGAGAGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGCCTAAGTGA                                    <  2:172715/140‑1
                                     cgccCACACACACTCCAACCTCTCTTCTCCCTTCACACCTGCAGACATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGT                                  <  1:807530/139‑1
                                      gcaCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAG                                                             <  1:572860/112‑1
                                      gcaCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAG                                                             >  2:572860/4‑115
                                        gctCATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCGGCAATTCTTTGCATCTAGCGTTTGAGCTCTGCGGAGGGCAAGCGTGAACTGATCTTACCCGGCACTAGTGGACACGGGGCTAACTGAGcaaa                               >  2:856423/4‑139
                                        GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCAC                               >  1:837614/1‑143
                                        GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACCCGGCTAAGTGAGTCAC                               >  1:530172/1‑143
                                             TACAATCCAAACTCTCTTCTCCCTTCACAGCTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTCAACTGATCTCACCCAGCAACAGTGGACACGCGGCTCCGTGAGTCACCTCcc                          >  2:353176/1‑141
                                               CAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCCTTTGACCTCTGCGGAGGGGAAGCGTGAAGTGATCTTACGTGGCAATAGTGGCGAAGCGGCTGTGTGAGTCAACTCTGcg                        >  2:258200/1‑141
                                                AATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCCGCAATAGTGGACACGCGGCTACGTGAGTCACCTCTcaga                       >  1:597530/1‑139
                                                             TTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA          <  1:872942/143‑1
                                                             TTCTCCCTTCACACATGCAGTAATGCACCTTCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGGGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA          <  1:860235/143‑1
                                                             TTCGCCCTGCACAGCTGCAGAAATGCCCCTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCA          <  2:790347/143‑1
                                                                  ccgTCACAGATGCAGCATCTCGCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG     <  1:838328/140‑1
                                                                     TCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG  <  2:667716/143‑1
                                                                                                                                            ||||||||||||||||||||||||||||||||||                                      
CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572332‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCG  <  NC_000913/2170235‑2170198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.