| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 40 (0.880) | 11 (0.330) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
8/196 | NT | 33.1% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 20 (0.440) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170093‑2170376 | aTCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 2:250104/143‑1 (MQ=255) atatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACGTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaa < 1:836709/143‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:448435/143‑1 (MQ=255) tttCGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 1:100638/143‑1 (MQ=255) ttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 2:207130/143‑1 (MQ=255) gCGGTCATTAATCCTTCGGCGATAAGCATTGTAGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa < 1:767353/143‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAATCAGTATCAACCAGt > 1:815063/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGt > 1:248089/1‑143 (MQ=255) tctCGGCGATAAGCATTGTCGTACTTCCGCTGGCGAGAATAACCGTCTGATCTTACCCAGCAATAGTGGACACGCGTCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAc < 1:496797/141‑1 (MQ=255) cGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCAAAAACAGTCGCAACCCGTAAAACAcccc > 1:171273/1‑143 (MQ=18) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTGAGAGGTGACACAAATAACGGAAGAGGGTTCAACCAGTAGAAAACGCCGTAAACAGc > 2:391704/1‑143 (MQ=18) cATTATCGTACATCCGCTGCCGAGAATGACTGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGATTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTACAACACCCCGTAAACaacc > 2:802080/1‑140 (MQ=14) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt < 1:402817/143‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt > 2:402817/1‑143 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:248089/143‑1 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTATCCAGCATCCGCCTgttt > 1:73713/1‑140 (MQ=255) ccGCTGTCTAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt < 1:139795/143‑1 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGCGGGCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc < 1:359702/143‑1 (MQ=255) cTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACACGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTgcgc > 2:631879/1‑143 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGCCTCACAGGACAAAAACAGTATCAACCGGTACACAAGGCCGTATGGAGCATTGCCCGGAATTTCgacct > 1:162730/1‑139 (MQ=14) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGa > 1:41276/1‑143 (MQ=32) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtga < 2:667716‑M2/143‑106 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggcgagatgctgcatctgtgacgg < 1:838328‑M2/143‑109 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcccgcttcccctccgcagaggtcaaacgctagatgcaaagaattgaaggtgcattactgcatgtgtgaagggagaa < 1:860235‑M2/143‑114 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaa < 1:872942‑M2/143‑114 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaatcgcaggggcatttctgcagctgtgcagggcgaa < 2:790347‑M2/143‑114 (MQ=255) tctgagaggtgaCTCACgtagccgcgtgtccactattgcggggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggatt > 1:597530‑M2/5‑17 (MQ=255) cgcagagTTGACTCACacagccgcttcgccactattgccacgtaagatcacttcacgcttcccctccgcagaggtcaaaggctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattg > 2:258200‑M2/3‑16 (MQ=255) gggaggtGACTCACggagccgcgtgtccactgttgctgggtgagatcagttgacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcagctgtgaagggagaagagagtttggattgta > 2:353176‑M2/3‑14 (MQ=255) tttgctcagttagccccgtgtccactagtgccgggtaagatcagttcacgcttgccctccgcagagctcaaacgctagatgcaaagaattgccggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgagc > 2:856423‑M2/5‑9 (MQ=255) gTGACTCACttagccgggtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:530172‑M2/1‑9 (MQ=255) gTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:837614‑M2/1‑9 (MQ=255) aCTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatgtctgcaggtgtgaagggagaagagaggttggagtgtgtgtgggcg < 1:807530‑M2/143‑138 (MQ=255) tCACttaggcgcgtgtccactattgctgggtaagatcagttcacgcttcctctccggagaggtcaaacgctagatgcacagaattgcaggtgcatctctgcatgtgtgaagggagaagagagtttggattgtatgtgcgcgta < 2:172715‑M2/143‑140 (MQ=255) tCACttagccgcgtgtcccctattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagttaggctggtatgtgcgccta < 1:68131‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtaaaacgctagatgcaaagaattgcaggtgcattgctgcatctgtgaagggagaagagaggttggattggatgtgcgcatgaa < 1:672171‑M2/143‑142 (MQ=255) | ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170093‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |