New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1314673 =	37 (0.810)	3 (0.070)	3/246	NT	8.0%	intergenic (+15/+45)	ompW/yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
	?	NC_000913	1314694 =	35 (0.830)					intergenic (+36/+24)	ompW/yciE	outer membrane protein W/DUF892 domain‑containing protein YciE

TTAACATGTCAGTGTGGTACATGGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTT  >  NC_000913/1314531‑1314814                                                                                                                                               |                                                                                                                                               ttAACATGTCAGTGTGGTACATGGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTACTTCCGCACAAAAACg                                                                                                                                                >  2:370159/1‑143 (MQ=255)  gaagcgattttaaatgaggaaaagcaaatggccgactggctgattcagaatattccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagcagcgaagaaataataccctttataccatgtccttattGa                                                                                                                                               <  1:675862‑M1/2‑1 (MQ=255)      ggatgttacatgaagacaagcaaatggcctactggctgattccgaatattccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGAcccc                                                                                                                                           >  2:137390‑M1/138‑143 (MQ=255)           aGTGTGGTACATGGATATCGATACCACCGCCAAGTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAat                                                                                                                                      <  1:567621/143‑1 (MQ=255)                ggTACATGGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACg                                                                                                                                <  1:623107/143‑1 (MQ=255)                 gTACATCGATATCGATGCCACCGCCAATGAGAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACgg                                                                                                                               <  1:707423/143‑1 (MQ=255)                  accATGGATGTGGAGACCACCGCCAATTATAAGCCGGGCGGTGCACAGCAACACGAGAGCGGACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATAGCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACggg                                                                                                                              <  1:881887/141‑1 (MQ=255)                   aCATGGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTAAGCAAAAAAACGACTCCAGAAT‑AGACgggg                                                                                                                             >  1:604607/1‑143 (MQ=255)                     aaaagcaaatggccgactggctgattcagaatattccgcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGACCCCGTAAT‑ATACGGGGTc                                                                                                                           >  1:501471‑M1/123‑143 (MQ=255)                     aTGGAGAGCGAGACCAGCGCGAATTAGAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTATA‑TTACGGGGTc                                                                                                                           <  2:196405/143‑1 (MQ=255)                               aTACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAAGGA‑TCAGTGATCATACGGGGTCAATAAGGACa                                                                                                                 >  1:796708/1‑143 (MQ=255)                                    accGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGCGTCAATAAGGACacgaga                                                                                                            >  2:697345/1‑138 (MQ=255)                                      cGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGaata                                                                                                          >  2:104577/1‑143 (MQ=255)                                      cGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATACGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCGGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGtata                                                                                                          >  1:637751/1‑143 (MQ=255)                                       gCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTGTaa                                                                                                         >  1:559152/1‑143 (MQ=255)                                             tataCGCTGGGCGGTGCACAGCAACACGATAACGTACGCCTCGATCCGTTGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGta                                                                                                   <  2:554468/143‑1 (MQ=255)                                               taAGCTGGGCGGTGCACAGCAACACGATAGCGGACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGtatt                                                                                                 <  2:215846/143‑1 (MQ=255)                                                       gcggcgCGCAGCAACACGACAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttcttc                                                                                         <  1:290107/143‑1 (MQ=255)                                                          gcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttctt                                                                                          <  2:686095‑M1/54‑1 (MQ=255)                                                          gcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttctt                                                                                          >  1:686095‑M1/86‑139 (MQ=255)                                                                                    cTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAAt                                                            >  1:584672/1‑143 (MQ=255)                                                                                    cTCGATCCGTGGGTGTTTATGTTCTCAGCAGGAGATCGTTTTTAATTGCGCACAAAAACGACACCGTAAT‑ATACGGGGTAAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTGCTACGACATCAGTTTCCGAGCGAAt                                                            >  2:84626/1‑143 (MQ=255)                                                                                       gATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGGATTGTTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaa                                                         >  1:519320/1‑143 (MQ=255)                                                                                          ccGTGGGTGTGGATGGTCTCAGCAGGATATCGTTTTGAATTCCGCACAAATACGACCCGGTAAT‑ATACGGGGTCACTAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaaaaa                                                      <  2:447871/143‑1 (MQ=255)                                                                                                   tttATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAG‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAAGTAAAAATTTCTCAgt                                             >  1:169055/1‑143 (MQ=255)                                                                                                      aTGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgt                                          >  2:797443/1‑143 (MQ=255)                                                                                                       tGTTCGCAGCAGGATATCGTTTTTGATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgtt                                         <  2:536380/143‑1 (MQ=255)                                                                                                         ttCTCAGCAGGACATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTGAGTTGTTTg                                       >  1:73321/1‑143 (MQ=255)                                                                                                            tcAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCgg                                    <  1:443967/143‑1 (MQ=255)                                                                                                              agcagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGaa                                  >  2:378657/1‑143 (MQ=255)                                                                                                              agcagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAAT‑AGGACATGGTATAAAGGGTATTATTTCTTCCCTTCTACGCCAACAGTTCCGGAGCGCATTAACAAGTTTCCAGTCGtttcgcgaac                                 >  2:134663/1‑136 (MQ=255)                                                                                                                cagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAata                                >  1:95879/1‑143 (MQ=255)                                                                                                                    atatCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGCATATTCt                            >  1:788588/1‑143 (MQ=255)                                                                                                                     tatCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATCCGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTg                           <  2:796708/143‑1 (MQ=255)                                                                                                                       tCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGACATCAGTTTCAGCGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGaa                         >  2:584052/1‑143 (MQ=255)                                                                                                                        cGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAAt                        <  1:329667/143‑1 (MQ=255)                                                                                                                          tttttAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGACTTAACAATTTCTCAGTGGTTTGCGGACTATTCTGAGTCa                      >  1:113055/1‑143 (MQ=255)                                                                                                                          tttttAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCa                      >  2:514812/1‑143 (MQ=255)                                                                                                                           gtttAATTCGGCACAACAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAg                     <  2:477288/142‑1 (MQ=255)                                                                                                                                  tCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCg              <  1:378657/143‑1 (MQ=255)                                                                                                                                   ccGCACAAAGTCGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCgg             <  2:344853/143‑1 (MQ=255)                                                                                                                                     gCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCTGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAACCAGCCAGTCGGcc           >  2:463301/1‑143 (MQ=255)                                                                                                                                     gCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGcc           >  1:698124/1‑143 (MQ=255)                                                                                                                                          aaaaCGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTg      <  2:427785/143‑1 (MQ=255)                                                                                                                                             aCGACCCCGTAAC‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTGGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCtt   <  1:460492/143‑1 (MQ=255)                                                                                                                                              cGACCCCGTAAT‑ATACGGGGTCAATGAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGCATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAGTCAGCCAGTCGGCCAGTTGCttt  >  2:561939/1‑143 (MQ=255)                                                                                                                                              cGACCCCGTAAT‑ATACGGGGTCAATAAGCACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTGTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCttt  <  1:370159/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               TTAACATGTCAGTGTGGTACATGGATATCGATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTT  >  NC_000913/1314531‑1314814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.