New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1314673 =	37 (0.810)	3 (0.070)	3/246	NT	8.0%	intergenic (+15/+45)	ompW/yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
	?	NC_000913	1314694 =	35 (0.830)					intergenic (+36/+24)	ompW/yciE	outer membrane protein W/DUF892 domain‑containing protein YciE

ATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTC  >  NC_000913/1314561‑1314834                                                                                                                                       |                                                                                                                                             aTACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAAGGA‑TCAGTGATCATACGGGGTCAATAAGGACa                                                                                                                                     >  1:796708/1‑143 (MQ=255)      accGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGCGTCAATAAGGACacgaga                                                                                                                                >  2:697345/1‑138 (MQ=255)        cGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGaata                                                                                                                              >  2:104577/1‑143 (MQ=255)        cGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATACGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCGGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGtata                                                                                                                              >  1:637751/1‑143 (MQ=255)         gCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTGTaa                                                                                                                             >  1:559152/1‑143 (MQ=255)               tataCGCTGGGCGGTGCACAGCAACACGATAACGTACGCCTCGATCCGTTGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGta                                                                                                                       <  2:554468/143‑1 (MQ=255)                 taAGCTGGGCGGTGCACAGCAACACGATAGCGGACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGtatt                                                                                                                     <  2:215846/143‑1 (MQ=255)                         gcggcgCGCAGCAACACGACAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttcttc                                                                                                             <  1:290107/143‑1 (MQ=255)                            gcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttctt                                                                                                              <  2:686095‑M1/54‑1 (MQ=255)                            gcaaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtccttattGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATttctt                                                                                                              >  1:686095‑M1/86‑139 (MQ=255)                                                      cTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAAt                                                                                >  1:584672/1‑143 (MQ=255)                                                      cTCGATCCGTGGGTGTTTATGTTCTCAGCAGGAGATCGTTTTTAATTGCGCACAAAAACGACACCGTAAT‑ATACGGGGTAAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTGCTACGACATCAGTTTCCGAGCGAAt                                                                                >  2:84626/1‑143 (MQ=255)                                                         gATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGGATTGTTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaa                                                                             >  1:519320/1‑143 (MQ=255)                                                            ccGTGGGTGTGGATGGTCTCAGCAGGATATCGTTTTGAATTCCGCACAAATACGACCCGGTAAT‑ATACGGGGTCACTAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaaaaa                                                                          <  2:447871/143‑1 (MQ=255)                                                                     tttATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAG‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAAGTAAAAATTTCTCAgt                                                                 >  1:169055/1‑143 (MQ=255)                                                                        aTGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgt                                                              >  2:797443/1‑143 (MQ=255)                                                                         tGTTCGCAGCAGGATATCGTTTTTGATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAgttgtt                                                             <  2:536380/143‑1 (MQ=255)                                                                           ttCTCAGCAGGACATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTGAGTTGTTTg                                                           >  1:73321/1‑143 (MQ=255)                                                                              tcAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCgg                                                        <  1:443967/143‑1 (MQ=255)                                                                                agcagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGaa                                                      >  2:378657/1‑143 (MQ=255)                                                                                agcagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAAT‑AGGACATGGTATAAAGGGTATTATTTCTTCCCTTCTACGCCAACAGTTCCGGAGCGCATTAACAAGTTTCCAGTCGtttcgcgaac                                                     >  2:134663/1‑136 (MQ=255)                                                                                 aagaaataataccctttataccatgtccttattgaccccgtatattacggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGc                                                          <  2:686095‑M2/85‑1 (MQ=255)                                                                                 aagaaataataccctttataccatgtccttattgaccccgtatattacggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGc                                                          >  1:686095‑M2/55‑139 (MQ=255)                                                                                  cagGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAata                                                    >  1:95879/1‑143 (MQ=255)                                                                                      atatCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGCATATTCt                                                >  1:788588/1‑143 (MQ=255)                                                                                       tatCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATCCGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTg                                               <  2:796708/143‑1 (MQ=255)                                                                                         tCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGACATCAGTTTCAGCGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGaa                                             >  2:584052/1‑143 (MQ=255)                                                                                          cGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAAt                                            <  1:329667/143‑1 (MQ=255)                                                                                            tttttAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGACTTAACAATTTCTCAGTGGTTTGCGGACTATTCTGAGTCa                                          >  1:113055/1‑143 (MQ=255)                                                                                            tttttAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCa                                          >  2:514812/1‑143 (MQ=255)                                                                                             gtttAATTCGGCACAACAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAg                                         <  2:477288/142‑1 (MQ=255)                                                                                                    tCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCg                                  <  1:378657/143‑1 (MQ=255)                                                                                                     ccGCACAAAGTCGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCgg                                 <  2:344853/143‑1 (MQ=255)                                                                                                       gCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCTGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAACCAGCCAGTCGGcc                               >  2:463301/1‑143 (MQ=255)                                                                                                       gCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGcc                               >  1:698124/1‑143 (MQ=255)                                                                                                            aaaaCGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTg                          <  2:427785/143‑1 (MQ=255)                                                                                                               aCGACCCCGTAAC‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTGGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCtt                       <  1:460492/143‑1 (MQ=255)                                                                                                                cGACCCCGTAAT‑ATACGGGGTCAATGAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGCATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAGTCAGCCAGTCGGCCAGTTGCttt                      >  2:561939/1‑143 (MQ=255)                                                                                                                cGACCCCGTAAT‑ATACGGGGTCAATAAGCACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTGTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCttt                      <  1:370159/143‑1 (MQ=255)                                                                                                                  gaccccgtatattacggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCtttt                     >  1:501471‑M2/22‑143 (MQ=255)                                                                                                                   CCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTcc                   <  2:290259‑M1/143‑1 (MQ=255)                                                                                                                      CGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCa                >  1:661743‑M1/1‑143 (MQ=255)                                                                                                                       tTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCAt               >  2:698124‑M1/2‑143 (MQ=255)                                                                                                                             ataCGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGGATTGAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTaaa          >  1:125350/1‑143 (MQ=255)                                                                                                                             ataCGGGGGCAATAAGGACATGGTATAAAGGGCATTATTTCTTAGCTTCTACGCCATCAGTTTCAGAGCGAACTAAAAATTGCTCAGTTGTTTGCGGAATAATCTGAATCAGCCAGCCGGCCATTGGCTTTTCATccataaaa          >  2:221205/1‑136 (MQ=255)                                                                                                                                 ggggtcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCGGAATCAGCCAGTAGGCCATTTGCTTGTCTTCATGTAACAtcc      >  2:137390‑M2/7‑142 (MQ=255)                                                                                                                                     tcAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTGCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTc  <  1:675862‑M2/141‑1 (MQ=255)                                                                                                                                       |                                                                                                                                             ATACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAAT‑ATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTC  >  NC_000913/1314561‑1314834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.