New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1922031	42 (0.920)	4 (0.090)	4/252	NT	9.1%	intergenic (+15/‑90)	yebV/yebW	protein YebV/protein YebW
	?	NC_000913	= 1922040	40 (0.920)					intergenic (+24/‑81)	yebV/yebW	protein YebV/protein YebW

TGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTTGTGAAGAT  >  NC_000913/1921895‑1922171                                                                                                                                          |                                                                                                                                             tgCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTCCCGTACCCGTTACGATCCACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAACAAGAA‑CCCGTAGGCa                                                                                                                                        >  2:704967/1‑143 (MQ=255) tgCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTCCCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAACCCCGTCGGc                                                                                                                                         >  1:9497/1‑143 (MQ=255) tgCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGCTCCAAAAAGAA‑CCCGTCGGCa                                                                                                                                        >  2:703347/1‑143 (MQ=255)  gCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAACAAGAA‑CCCGTCGGCAt                                                                                                                                       >  1:173028/1‑143 (MQ=255)   cAACTGGATGCCTGGGATGCTGAATCCGGTATCCCTGCCCTGCTAAATGGCGAACTCTCTGTCCTTTACCGTAACCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCATCGGCATg                                                                                                                                      <  2:695041/143‑1 (MQ=255)   cAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTACTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATg                                                                                                                                      >  2:128770/1‑143 (MQ=255)    aaCTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTCCCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATgg                                                                                                                                     >  1:274143/1‑143 (MQ=255)       tGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGcgg                                                                                                                                  >  1:723091‑M2/1‑140 (MQ=255)             gcggggatgGTGAAACCAGTCTCCCTGCCCTGCTAAATGGCGAACACTCTGGCCTTTACCGTACCCGTTACGATCAACAATCGGGTGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGccatgccgacgggttctt                                                                                                                            <  2:344711‑M1/140‑19 (MQ=255)               tGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTAGTTg                                                                                                                          >  1:640494/1‑143 (MQ=255)                gggATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGccatgccgacgggttcttttt                                                                                                                         <  1:671471‑M1/143‑22 (MQ=255)                   atgagtaaaCCATGATCCATTCCATGCTAAATGGCGAACACTCTGTCCTGTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCt                                                                                                                      <  1:597836/137‑1 (MQ=255)                     gCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTgg                                                                                                                    <  1:481136/143‑1 (MQ=255)                       tGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGtt                                                                                                                  >  1:405664/1‑143 (MQ=255)                          aaCCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATACGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTAtt                                                                                                               >  1:608017/1‑143 (MQ=255)                           aCCAGTATCCCTGCCCTCCTAAAGGGCGATCACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTc                                                                                                              <  2:74075/143‑1 (MQ=255)                                  tCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGtt                                                                                                       <  1:369583/143‑1 (MQ=255)                                                   ggCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTaaa                                                                                      <  1:286063/143‑1 (MQ=255)                                                   ggCAAACACTCTGTCCCGTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATGATACGTCTTGCCTGATCCAAAAAGAA‑CACGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTaaa                                                                                      <  2:443253/143‑1 (MQ=255)                                                      gAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACtt                                                                                   >  1:470345/1‑143 (MQ=255)                                                      gAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGGCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTCATTTGTCCTGACTATTCCACCGAACTAAAATCTCCCCTAAACtt                                                                                   >  2:4169/1‑143 (MQ=255)                                                      gAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCATCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGGTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAAGtt                                                                                   >  1:336288/1‑143 (MQ=255)                                                       aaCACTCTGTCCTTTACCGTACCCGTTCCGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGGTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTa                                                                                  >  2:17737/1‑143 (MQ=255)                                                           ctctGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAACAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACgg                                                                              <  1:522855/143‑1 (MQ=255)                                                            tctGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGccatgccgacgggttctttttgga                                                                                                                      <  2:198416‑M1/102‑25 (MQ=255)                                                            tctGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGccatgccgacgggttctttttgga                                                                                                                      >  1:198416‑M1/1‑78 (MQ=255)                                                            tctGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTACACTTAACGGt                                                                             >  1:488289/1‑143 (MQ=255)                                                            tctGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTACCGGt                                                                             >  1:643908/1‑143 (MQ=255)                                                                  cTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGca                                                                       >  1:816975/1‑143 (MQ=255)                                                                   ttgaCCGTACCCGTTACGATCAACAATCTGATGCCGGGAGTAGGCGTCTTGCCTGGTCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTACACTTAACGGTACGGcac                                                                      <  2:201846/140‑1 (MQ=255)                                                                   gttACCCTACCTGTTACCAACAACAAGCGGATGCCTCGATTATGCTTCTCGCCTGATCCAAAAAGAA‑CCCGTCGCCATGGCGGGTTATTTCTACTTATTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGcac                                                                      <  2:488608/142‑1 (MQ=255)                                                                        cGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTGTCCTAAACTTAACGGTACGGCCCCacac                                                                 >  2:821540/1‑143 (MQ=255)                                                                             ccGTTACGATCAACAATCTGTTGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAT‑CCCGTCGGCATGGAGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCgg                                                            <  2:604370/143‑1 (MQ=255)                                                                             ccGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCgg                                                            <  1:671544/143‑1 (MQ=255)                                                                               gTTACGATACACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAAGCGCTCCTAAACTTAACGGTACGGCACCACACTTCgggg                                                          <  2:816381/143‑1 (MQ=255)                                                                                 tACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTACCACACCGCAAAACCGCTCCTAAACTGAACGGGACTGCACGACACTTAGGCGAt                                                        >  2:770551/1‑143 (MQ=255)                                                                                    gATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGaa                                                     >  2:698764/1‑143 (MQ=255)                                                                                      tCAACAATCTGATGCCTAGACTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCCCACGTCGGGGATGaagt                                                   >  2:110799/1‑141 (MQ=255)                                                                                          caaTCTGATGCCGGGATTATGCGTCTTGCCTCTTCCAAAAAAAA‑CCCGTCGGCATTGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTTAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTc                                               <  1:588250/143‑1 (MQ=255)                                                                                          caaTCTGATGCCCGCATTACGCGTCTTGCCTGATCCAAAAAGAC‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTc                                               <  1:27578/143‑1 (MQ=255)                                                                                              cTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCAGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCgcgc                                           >  2:449820/1‑143 (MQ=255)                                                                                                          ttATGCGTCTTGCCTGTTCCAAAAAGAA‑CCTGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCTCCTGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGTGATGAAATGTTCGCGCTGGTACTTtttg                               <  2:222867/143‑1 (MQ=255)                                                                                                                      ccTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACGTTTTGTTTGCTGCCtag                   >  2:726520/1‑141 (MQ=255)                                                                                                                       cTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTGCGTGTGCTACGTggg                  >  1:327582/1‑142 (MQ=255)                                                                                                                           tCCAAAAAGAA‑CCCGTCGGCATGGcgggttctttttggatcaggcaagacgcataatccaggcatcagattgttgatcgtaacgggtacggtaaaggacaga                                                       >  1:198416‑M2/1‑24 (MQ=255)                                                                                                                           tCCAAAAAGAA‑CCCGTCGGCATGGcgggttctttttggatcaggcaagacgcataatccaggcatcagattgttgatcgtaacgggtacggtaaaggacaga                                                       <  2:198416‑M2/102‑79 (MQ=255)                                                                                                                            ccAAAAAGAA‑CCCGTCGGGATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCg             <  2:843627/143‑1 (MQ=255)                                                                                                                              aaaaaGAA‑CCCGTCGGCATGGcgggttctttttggatcaggcaagacgcataatccaggcatcagattgttgatcgtaacgggtacggtaaaggacagagtgttcgccatttagcagggcagggatactggtttcagcatccc           <  1:671471‑M2/143‑123 (MQ=255)                                                                                                                              aaaaaGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGt           >  1:641596/1‑143 (MQ=255)                                                                                                                               aaaaGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGtt          <  1:606545/143‑1 (MQ=255)                                                                                                                                 aaGAA‑CCCGTCGGCATGGcgggttctttttggatcaggcaagacgcataatccaggcacccgattgttgatcgtaacgggtacggtaaaggccagagtgttcgccatttagcagggcagggagactggtttcaccatccccgc        <  2:344711‑M2/143‑126 (MQ=255)                                                                                                                                   gAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTTGTGa      <  1:516727/143‑1 (MQ=255)                                                                                                                                     a‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTCGTGAAg    >  1:840647/1‑143 (MQ=255)                                                                                                                                     a‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGAACCACACTTCGGGGCTCAAATGTTCGCGCTGGTACTCTTTGTTGGCTACCTGGATGCCGGTGGTGAAg    >  2:295712/1‑143 (MQ=255)                                                                                                                                        ccGccatgccgacgggttctttttggatcaggcaagacgcataatccaggcatcagattgttgatcgtaacgggtacggtaaaggacagagtgttcgccatttagcagggcagggatactggtttcagcatcccaggcatcca  >  1:723091‑M1/1‑3 (MQ=255)                                                                                                                                        ccGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTTGTGAAGat  >  1:719041/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                             TGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAAATGGCGAACACTCTGTCCTTTACCGTACCCGTTACGATCAACAATCTGATGCCTGGATTATGCGTCTTGCCTGATCCAAAAAGAA‑CCCGTCGGCATGGCGGGTTATTTGTCCTGGTTATTCCCCCGTTGTAAAATCTCTCCTAAACTTAACGGTACGGCACCACACTTCGGGGATGAAATGTTCGCGCTGGTACTTTTTGTTTGCTACCTGGATGGCGGTTGTGAAGAT  >  NC_000913/1921895‑1922171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.