New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3754861 =NA (NA)3 (0.070) 3/250 NT NA noncoding (1/34 nt) other REP270a
?NC_000913 3754889 = NA (NA)noncoding (29/34 nt) other REP270a

TGGTTCGCCCGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAG  >  NC_000913/3754720‑3755003
                                                                                                                                             |                                                                                                                                              
tGGTTCGCCCGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGcc                                                                                                                                               >  1:538945/1‑143 (MQ=255)
   caaagcacgcgccggctggtgggctactcggataaaccgttggggctgttctgatataagaagctggtcgcattgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGa                                                                                                                                            >  2:689358‑M1/139‑143 (MQ=255)
   caaaccaagtgcctgctggtgagctactcggataaaccgttggggctgttctgatataagaagctggtcgcattgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGa                                                                                                                                            >  1:358800‑M1/139‑143 (MQ=255)
    aaaccaagtgcctgctggtgagctactcggataaaccgttggggctgttctgatataagaggctggtcgcattgggtattcattgcctgatgcgacgcttactcgtcttatcatgcctacgggaacctgaccgtaggCCGGAt                                                                                                                                           <  2:531123‑M1/6‑1 (MQ=255)
     cGCCCGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATg                                                                                                                                          >  1:541964/1‑143 (MQ=255)
        ccGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAACCGTACGTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGCTTAGAACGTAAACTGTAACAACGTGCGCTTTGGTTATGCCGGCTccgg                                                                                                                                       >  2:265479/1‑143 (MQ=255)
         cGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATgcggc                                                                                                                                      >  2:278865/1‑143 (MQ=255)
           cTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgt                                                                                                                                    >  1:694325/1‑143 (MQ=255)
               ccATCGAAACGCGAGAGTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTAc                                                                                                                                <  1:194532/143‑1 (MQ=255)
                 cgcGAAACGCGAGATTAACCTGCTGACAAAGCACGCCCCAGAGACGTACTTCTGTTGGCGTAGTCTGGGTGATTGCGCACGTAGGTTTAAAACGTAAATGGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGc                                                                                                                              <  2:280507/141‑1 (MQ=255)
                  tCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGcc                                                                                                                             <  1:491506/143‑1 (MQ=255)
                         gcgAGATTAAGCTCCTGATAAGACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCg                                                                                                                      <  2:894093/143‑1 (MQ=255)
                         gcgAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCg                                                                                                                      <  2:714005/143‑1 (MQ=255)
                         gcgAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCg                                                                                                                      <  2:795819/143‑1 (MQ=255)
                           tactcgtataaaccgttggggctgttctgatataagaagctggtcgcattgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGc                                                                                                                    >  2:38093‑M1/115‑143 (MQ=255)
                                    gtCCTGACCGCACACCCCCGATAAACGTACTTCTGTTGGCGTAGTCTGATTGATTGCGCACGTAGGTTTAAAACGTAAATTTTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCa                                                                                                           <  2:201244/142‑1 (MQ=37)
                                     tCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGCAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTCTACGCCCTATCCGTCCTCCggccgc                                                                                                          >  2:894748/1‑139 (MQ=39)
                                             aaaCACGCCCCAGAAACGTACTTCTGTTAGCGTAGTCTGGGTTATTGCGCACGTAGGTGTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGt                                                                                                  <  1:4234/143‑1 (MQ=255)
                                              aaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                 <  1:64676/143‑1 (MQ=255)
                                              aaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                 <  1:381196/143‑1 (MQ=255)
                                              aaCACGCCCCAGAAACGGACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                 <  2:158801/143‑1 (MQ=255)
                                                   gCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCAt                                                                                            <  2:538945/143‑1 (MQ=255)
                                                   gCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGCTCAGGTTCCCGTAGGCAt                                                                                            <  1:844818/143‑1 (MQ=255)
                                                   gCCCCAGAAACGTACTTCTGTTGGCGTAGGCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCTCGTAGGCAt                                                                                            <  1:278865/143‑1 (MQ=255)
                                                     cctggAATCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGa                                                                                          <  2:338526/139‑1 (MQ=255)
                                                      ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGCCAGGTTCCCGTAGGCATGAt                                                                                         >  2:831641/1‑143 (MQ=255)
                                                      ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATACGGCCAACGGTCAGGTTCCCGTAGGCATGAt                                                                                         <  2:782360/143‑1 (MQ=255)
                                                       cAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGCTa                                                                                        >  1:485734/1‑143 (MQ=255)
                                                        aGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATaa                                                                                       <  1:213124/143‑1 (MQ=255)
                                                          acaCGTCCTTCTGGTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGCAACAACGTTCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGa                                                                                     <  2:536756/141‑1 (MQ=255)
                                                            aCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGATTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCAGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcg                                                                                   >  1:90178/1‑143 (MQ=255)
                                                                 tttCTGTTGGCGTATTATGAGTTATTGCGCACGTAGGTTTAAATCGTACATTCTAACAACGTGTGCTTTGTCTATTCCTTATGCGGCTTGTACGCCTTATCCGGCCTACGGTCAGGTTTCCGTAGGCATGATAAGACGCGTaa                                                                              <  2:367366/142‑1 (MQ=255)
                                                                   tCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGc                                                                            <  1:293810/143‑1 (MQ=255)
                                                                      gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTATGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGGTAGGGCGCGTAAGCGTc                                                                         >  1:23564/1‑143 (MQ=38)
                                                                          gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTCCGGTCACGTTCCCGTAGGCATGATCAGACGCGTAAGCGgcgccg                                                                     >  2:480791/1‑141 (MQ=255)
                                                                          gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCTTACGCGTcttat                                                                     <  1:292089/143‑5 (MQ=255)
                                                                          gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCTTACGCGTcttat                                                                     <  2:595798/143‑5 (MQ=255)
                                                                           cGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATc                                                                    >  2:556237/1‑143 (MQ=255)
                                                                             tAGTCTGGTTTATTGCGCATGTAGGTTTAAAACGTAAATTGTAACAGCGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCGTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAg                                                                  <  2:33400/143‑1 (MQ=255)
                                                                                  tGGGTTATTGCGCACGTAGGTTTAAAACGTAAAGTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCACGTCGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAAt                                                             <  1:613497/143‑1 (MQ=255)
                                                                                  tGGGTGCTTCCGCACGTAGGTTTAAAACGTCAATTGTAACAACGTGCGCTTTGTTCATGCCGGATGCGTCGTGTACGCCTTATCCGGCCTACTGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAAt                                                             <  1:300189/143‑1 (MQ=38)
                                                                                     gTTTTTGCGCACGTATGTTTAAAACGTAAATTGTACGAACGTGCGCTTTGTTTATGCCGGATGCGGCGGTTACGCCTTATCCTGCCTACGGTCAGGTTCCCGTAGTCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGaa                                                          <  2:43774/143‑1 (MQ=38)
                                                                                     gTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCACCGCACCAGGCCATGaa                                                          >  2:195592/1‑143 (MQ=255)
                                                                                       tATTGCGCACGTTAGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATa                                                        <  2:825036/143‑1 (MQ=255)
                                                                                         ttGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATCGCGAATGCGGCGGGTCAGCCTCTCTCTTCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc                                                      >  1:654622/1‑143 (MQ=37)
                                                                                            cgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCaa                                                   <  1:758815/143‑1 (MQ=255)
                                                                                            cgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCACGATAAGACGCGTAAGCGTCGCATCCGGCAATGAACACCCaa                                                   >  2:858589/1‑143 (MQ=255)
                                                                                              cACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATg                                                 <  2:541964/143‑1 (MQ=255)
                                                                                               aCGTAGGTTGAAAACGTAAATTGTCACAACGTGCGCGTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGc                                                <  2:809674/143‑1 (MQ=255)
                                                                                                 gTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGa                                              >  2:147163/1‑143 (MQ=255)
                                                                                                  taagTTTAAAACTCAATTTGTAACAACGGGCGCTTTGTTTGTGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGAc                                             <  1:198380/140‑1 (MQ=38)
                                                                                                  tAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGAc                                             <  2:703136/143‑1 (MQ=255)
                                                                                                     gTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTAAGGTGCCCGTAGGCCTGATACGACGCGTAAGCGTCGCATCAGGCAATGAATCCCCAATGCGACCAg                                          >  1:122144/1‑143 (MQ=38)
                                                                                                     cttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGcc                                                                                                                   >  1:272053‑M1/41‑70 (MQ=255)
                                                                                                     cttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGcc                                                                                                                   <  2:272053‑M1/30‑1 (MQ=255)
                                                                                                       ttAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCCGGCCATGAATACCCACTGCGACCAGcc                                        >  1:397906/1‑142 (MQ=255)
                                                                                                         aaaaCGTAAATTGTAACAGCGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttc                                      <  1:485723/143‑1 (MQ=255)
                                                                                                         aaaaCGTAAATGGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttc                                      <  2:142748/143‑1 (MQ=255)
                                                                                                           aaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttctt                                    <  2:296915/143‑1 (MQ=255)
                                                                                                           aaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttctt                                    <  1:836132/143‑1 (MQ=255)
                                                                                                            aCGTGAATTGCAACAACGTGCGCTTTGTGTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCACGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTta                                   <  2:127396/143‑1 (MQ=255)
                                                                                                              gTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTtata                                 >  1:743576/1‑143 (MQ=255)
                                                                                                                   ttGTAACAACGTGCGCATTGTTTATGCCGGATGCGGCGTATACGCCTTATTCGGCCTACGGTCAGGGTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCATGCAATGAATACTCAATGCGACCAGGTGCTGATATcggg                            >  1:38003/1‑140 (MQ=37)
                                                                                                                    tGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGaa                           <  1:321429/143‑1 (MQ=255)
                                                                                                                       aacaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGCTACGACGCGTATGCGTCTCATCTGGCAATGAATACTCAATGCAACCAGCAACTTATATCAGAACac                        >  1:279989/1‑142 (MQ=37)
                                                                                                                       aacaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAg                        >  1:517701/1‑143 (MQ=255)
                                                                                                                          aacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGccc                     <  1:268958/143‑1 (MQ=255)
                                                                                                                           acGTGCGTTTTGTTTATGCCGGATTCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGGATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGcccc                    <  2:722601/143‑1 (MQ=255)
                                                                                                                                 gcTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGt              >  2:404869/1‑143 (MQ=255)
                                                                                                                                  cTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCGAACGGtt             >  1:32428/1‑143 (MQ=255)
                                                                                                                                   tttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCAAGGAAAACCCAATGCGACCAGCTTCTTATATCCGAACAGCCCCAACGGttt            >  1:456740/1‑143 (MQ=255)
                                                                                                                                       tttATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCCACGGTTTATcc        >  2:64030/1‑143 (MQ=255)
                                                                                                                                         tATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCGTCTTATAGCAGAACAGCCCCAACGGTTTATCCGa      <  1:147163/143‑1 (MQ=255)
                                                                                                                                         tATGCCGGATGCGGCGTGTACGCCTCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATTAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGa      <  1:34634/143‑1 (MQ=255)
                                                                                                                                           tGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGt    >  1:490066/1‑143 (MQ=255)
                                                                                                                                             CCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCCACGGTTTATCCGAGTAg  <  1:497471‑M1/143‑1 (MQ=255)
                                                                                                                                             CCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTAGATCAGGACAGCCCCAACGGTTTATCCGAGTAg  <  1:232348‑M1/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGGTTCGCCCGCTCACCATCGAAACGCGAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAG  >  NC_000913/3754720‑3755003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.