New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3754861 =NA (NA)3 (0.070) 3/250 NT NA noncoding (1/34 nt) other REP270a
?NC_000913 3754889 = NA (NA)noncoding (29/34 nt) other REP270a

GAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTGGTTTG  >  NC_000913/3754747‑3755026
                                                                                                                                              |                                                                                                                                         
tactcgtataaaccgttggggctgttctgatataagaagctggtcgcattgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGc                                                                                                                                           >  2:38093‑M1/115‑143 (MQ=255)
         gtCCTGACCGCACACCCCCGATAAACGTACTTCTGTTGGCGTAGTCTGATTGATTGCGCACGTAGGTTTAAAACGTAAATTTTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCa                                                                                                                                  <  2:201244/142‑1 (MQ=37)
          tCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGCAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTCTACGCCCTATCCGTCCTCCggccgc                                                                                                                                 >  2:894748/1‑139 (MQ=39)
                  aaaCACGCCCCAGAAACGTACTTCTGTTAGCGTAGTCTGGGTTATTGCGCACGTAGGTGTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGt                                                                                                                         <  1:4234/143‑1 (MQ=255)
                   aaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                                        <  1:64676/143‑1 (MQ=255)
                   aaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                                        <  1:381196/143‑1 (MQ=255)
                   aaCACGCCCCAGAAACGGACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                                                                                        <  2:158801/143‑1 (MQ=255)
                        gCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCAt                                                                                                                   <  2:538945/143‑1 (MQ=255)
                        gCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGCTCAGGTTCCCGTAGGCAt                                                                                                                   <  1:844818/143‑1 (MQ=255)
                        gCCCCAGAAACGTACTTCTGTTGGCGTAGGCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCTCGTAGGCAt                                                                                                                   <  1:278865/143‑1 (MQ=255)
                          cctggAATCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGa                                                                                                                 <  2:338526/139‑1 (MQ=255)
                           ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGCCAGGTTCCCGTAGGCATGAt                                                                                                                >  2:831641/1‑143 (MQ=255)
                           ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATACGGCCAACGGTCAGGTTCCCGTAGGCATGAt                                                                                                                <  2:782360/143‑1 (MQ=255)
                            cAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGCTa                                                                                                               >  1:485734/1‑143 (MQ=255)
                             aGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATaa                                                                                                              <  1:213124/143‑1 (MQ=255)
                               acaCGTCCTTCTGGTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGCAACAACGTTCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGa                                                                                                            <  2:536756/141‑1 (MQ=255)
                                 aCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGATTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCAGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcg                                                                                                          >  1:90178/1‑143 (MQ=255)
                                      tttCTGTTGGCGTATTATGAGTTATTGCGCACGTAGGTTTAAATCGTACATTCTAACAACGTGTGCTTTGTCTATTCCTTATGCGGCTTGTACGCCTTATCCGGCCTACGGTCAGGTTTCCGTAGGCATGATAAGACGCGTaa                                                                                                     <  2:367366/142‑1 (MQ=255)
                                        tCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGc                                                                                                   <  1:293810/143‑1 (MQ=255)
                                           gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTATGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGGTAGGGCGCGTAAGCGTc                                                                                                >  1:23564/1‑143 (MQ=38)
                                               gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTCCGGTCACGTTCCCGTAGGCATGATCAGACGCGTAAGCGgcgccg                                                                                            >  2:480791/1‑141 (MQ=255)
                                               gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCTTACGCGTcttat                                                                                            <  1:292089/143‑5 (MQ=255)
                                               gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCTTACGCGTcttat                                                                                            <  2:595798/143‑5 (MQ=255)
                                                cGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATc                                                                                           >  2:556237/1‑143 (MQ=255)
                                                  tAGTCTGGTTTATTGCGCATGTAGGTTTAAAACGTAAATTGTAACAGCGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCGTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAg                                                                                         <  2:33400/143‑1 (MQ=255)
                                                       tGGGTTATTGCGCACGTAGGTTTAAAACGTAAAGTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCACGTCGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAAt                                                                                    <  1:613497/143‑1 (MQ=255)
                                                       tGGGTGCTTCCGCACGTAGGTTTAAAACGTCAATTGTAACAACGTGCGCTTTGTTCATGCCGGATGCGTCGTGTACGCCTTATCCGGCCTACTGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAAt                                                                                    <  1:300189/143‑1 (MQ=38)
                                                          gTTTTTGCGCACGTATGTTTAAAACGTAAATTGTACGAACGTGCGCTTTGTTTATGCCGGATGCGGCGGTTACGCCTTATCCTGCCTACGGTCAGGTTCCCGTAGTCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGaa                                                                                 <  2:43774/143‑1 (MQ=38)
                                                          gTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCACCGCACCAGGCCATGaa                                                                                 >  2:195592/1‑143 (MQ=255)
                                                            tATTGCGCACGTTAGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATa                                                                               <  2:825036/143‑1 (MQ=255)
                                                              ttGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATCGCGAATGCGGCGGGTCAGCCTCTCTCTTCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc                                                                             >  1:654622/1‑143 (MQ=37)
                                                                 cgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCaa                                                                          <  1:758815/143‑1 (MQ=255)
                                                                 cgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCACGATAAGACGCGTAAGCGTCGCATCCGGCAATGAACACCCaa                                                                          >  2:858589/1‑143 (MQ=255)
                                                                   cACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATg                                                                        <  2:541964/143‑1 (MQ=255)
                                                                    aCGTAGGTTGAAAACGTAAATTGTCACAACGTGCGCGTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGc                                                                       <  2:809674/143‑1 (MQ=255)
                                                                      gTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGa                                                                     >  2:147163/1‑143 (MQ=255)
                                                                       taagTTTAAAACTCAATTTGTAACAACGGGCGCTTTGTTTGTGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGAc                                                                    <  1:198380/140‑1 (MQ=38)
                                                                       tAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGAc                                                                    <  2:703136/143‑1 (MQ=255)
                                                                          gTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTAAGGTGCCCGTAGGCCTGATACGACGCGTAAGCGTCGCATCAGGCAATGAATCCCCAATGCGACCAg                                                                 >  1:122144/1‑143 (MQ=38)
                                                                          cttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGcc                                                                                                                                          >  1:272053‑M1/41‑70 (MQ=255)
                                                                          cttacgcgtcttatcatgcctacgggaacctgaccgtaggCCGGATGCGGCGTGTACGCCTTATCCGGcc                                                                                                                                          <  2:272053‑M1/30‑1 (MQ=255)
                                                                            ttAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCCGGCCATGAATACCCACTGCGACCAGcc                                                               >  1:397906/1‑142 (MQ=255)
                                                                              aaaaCGTAAATTGTAACAGCGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttc                                                             <  1:485723/143‑1 (MQ=255)
                                                                              aaaaCGTAAATGGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttc                                                             <  2:142748/143‑1 (MQ=255)
                                                                                aaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttctt                                                           <  1:836132/143‑1 (MQ=255)
                                                                                aaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGcttctt                                                           <  2:296915/143‑1 (MQ=255)
                                                                                 aCGTGAATTGCAACAACGTGCGCTTTGTGTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCACGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTta                                                          <  2:127396/143‑1 (MQ=255)
                                                                                   gTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTtata                                                        >  1:743576/1‑143 (MQ=255)
                                                                                        ttGTAACAACGTGCGCATTGTTTATGCCGGATGCGGCGTATACGCCTTATTCGGCCTACGGTCAGGGTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCATGCAATGAATACTCAATGCGACCAGGTGCTGATATcggg                                                   >  1:38003/1‑140 (MQ=37)
                                                                                         tGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGaa                                                  <  1:321429/143‑1 (MQ=255)
                                                                                            aacaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCCTGCTACGACGCGTATGCGTCTCATCTGGCAATGAATACTCAATGCAACCAGCAACTTATATCAGAACac                                               >  1:279989/1‑142 (MQ=37)
                                                                                            aacaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAg                                               >  1:517701/1‑143 (MQ=255)
                                                                                               aacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGccc                                            <  1:268958/143‑1 (MQ=255)
                                                                                                acGTGCGTTTTGTTTATGCCGGATTCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGGATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGcccc                                           <  2:722601/143‑1 (MQ=255)
                                                                                                      gcTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGt                                     >  2:404869/1‑143 (MQ=255)
                                                                                                       cTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCGAACGGtt                                    >  1:32428/1‑143 (MQ=255)
                                                                                                        tttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCAAGGAAAACCCAATGCGACCAGCTTCTTATATCCGAACAGCCCCAACGGttt                                   >  1:456740/1‑143 (MQ=255)
                                                                                                            tttATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCCACGGTTTATcc                               >  2:64030/1‑143 (MQ=255)
                                                                                                              tATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCGTCTTATAGCAGAACAGCCCCAACGGTTTATCCGa                             <  1:147163/143‑1 (MQ=255)
                                                                                                              tATGCCGGATGCGGCGTGTACGCCTCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATTAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGa                             <  1:34634/143‑1 (MQ=255)
                                                                                                                tGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGt                           >  1:490066/1‑143 (MQ=255)
                                                                                                                ggccggataaggcgtacacgccgcatccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAg                                                                                                    >  1:272053‑M2/31‑70 (MQ=255)
                                                                                                                ggccggataaggcgtacacgccgcatccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAg                                                                                                    <  2:272053‑M2/40‑1 (MQ=255)
                                                                                                                 gccggataaggcgtacacgccgcatccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATACGAGTa                          >  2:38093‑M2/30‑143 (MQ=255)
                                                                                                                  CCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCCACGGTTTATCCGAGTAg                         <  1:497471‑M1/143‑1 (MQ=255)
                                                                                                                  CCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTAGATCAGGACAGCCCCAACGGTTTATCCGAGTAg                         <  1:232348‑M1/143‑1 (MQ=255)
                                                                                                                       TGCCGCGTCTACGCCTTATCCGGCCTACGTTCAGGCTCACGTAGACATGATAAGACGCGTAAGCGTCGCCTCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCAc                    >  2:532057‑M1/1‑143 (MQ=255)
                                                                                                                                tACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCCATGAATATCCAATGCGACCAGCTTCTTCTATCAGAACAGACCCAACGGCCTATCCGAGTATCTCACCCGCAggac           >  2:85494/1‑141 (MQ=38)
                                                                                                                                    ccTTAACCGGCCTACGGTCAGGTTCCCGTGGGGATGACACGACGCGTAAGCGTCGAATCAGGTAAGTCGTAACAAGGTCGTCTTGCGCCTTCTATCATAACACCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTg       <  1:415267/143‑1 (MQ=255)
                                                                                                                                      ttATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTGGt     >  1:42858/1‑143 (MQ=255)
                                                                                                                                        atccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGAGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCCTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTGGttt   <  2:531123‑M2/137‑1 (MQ=255)
                                                                                                                                         tccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTGGTTTg  >  1:358800‑M2/6‑143 (MQ=255)
                                                                                                                                         tccggCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCCCACCAGCCGGCGCGTGCTTTg  >  2:689358‑M2/6‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                         
GAGATTAAACTCCTGACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCCCAACGGTTTATCCGAGTAGCTCACCAGCAGGCACTTGGTTTG  >  NC_000913/3754747‑3755026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.