New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4168341	13 (0.290)	3 (0.070)	3/244	NT	19.4%	intergenic (+141/‑31)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	= 4168363	13 (0.310)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu

TTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAA  >  NC_000913/4168203‑4168482                                                                                                                                           |                                                                                                                                              ttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa                                                                                                                                           >  1:519888/1‑143 (MQ=255) ttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACACTACACGAAAATATCa                                                                                                                                           >  2:685840/1‑143 (MQ=255)    aagaagCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCGCACCCTACACGAAAATATCACGc                                                                                                                                        >  2:18321/1‑143 (MQ=255)         gCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGACAcgc                                                                                                                                   >  2:712201/1‑143 (MQ=255)             aCTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGa                                                                                                                               <  2:131185/143‑1 (MQ=40)             aCTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGa                                                                                                                               <  1:672157/143‑1 (MQ=40)              cTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGAt                                                                                                                              >  1:177959/1‑143 (MQ=255)                        cTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatttt                                                                                                                    >  2:5702‑M2/1‑138 (MQ=255)                         taagtcagattgTCTGATAGAGAGTGACAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACTCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc                                                                                                                   >  2:795567‑M2/6‑137 (MQ=255)                           ccccaggtTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgt                                                                                                                 <  1:621784‑M1/140‑31 (MQ=255)                           acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt                                                                                                                 >  2:550580‑M2/1‑135 (MQ=255)                                gATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagg                                                                                                            <  2:686066‑M1/143‑36 (MQ=255)                                     ggggagagaatgtGAAAGGCAAGGCGGTTACGTGTTGGGAGTGAGGCTGAAGAGAATCAGGCCGTTCGCTTTCTATTAAGGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgag                                                                                                       <  2:152716‑M1/137‑41 (MQ=255)                                       tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTc                                                                                                     <  2:435727/143‑1 (MQ=37)                                           aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGCGATAAGCACTTTTCGTGTCCCCTTCGTCTaga                                                                                                 >  1:399796/1‑143 (MQ=21)                                           aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCAGAAGAGAATAAGGCCGTTCGCTGTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                 >  2:781031/1‑143 (MQ=21)                                             aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                               >  1:585025/1‑143 (MQ=32)                                                 tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCa                                                                                           >  2:195977/1‑143 (MQ=32)                                                  gAAAAGCAAGGCGTTTACGCGTTGGGAGTTAGGCTGACGACATTCATGCCCTTCTTTTTGTTTTAATTAAATCTCAATCTAGACGAAAATAGCACGCAACGGGTGATAAGCAAGTTTCGTGTCCCCTTCGTCTAGAGGCCCAg                                                                                          <  1:122311/143‑1 (MQ=2)                                                                                                                      aaggCTCACCCGACACGAAACTATCACGCAGCGCGTGAGAAGCAATGTTCGCGTCCCCTCCGTCTAGAGGCCCAGGACACCGCCCTGTCGCGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga                      <  2:329999/140‑1 (MQ=1)                                                                                                                        agttCATCCTACACGAAAATATCACGCAACGAGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtgagt                    <  1:252132/140‑1 (MQ=0)                                                                                                                          cTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttccttaatagaaagcgaacggcctgattctcttcagcctcactcccaacacgtaaccgccttgcctttcacattctctcccc                  <  2:152716‑M2/143‑104 (MQ=255)                                                                                                                               ccTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtcgggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatcagacaatc             <  2:686066‑M2/143‑109 (MQ=255)                                                                                                                                    acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgt        >  2:550580‑M1/1‑8 (MQ=255)                                                                                                                                    acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaacctgggg        <  1:621784‑M2/143‑114 (MQ=255)                                                                                                                                      gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagagtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttgtcactctctatcagacaatctgactta      >  2:795567‑M1/1‑6 (MQ=255)                                                                                                                                       aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgag     >  2:5702‑M1/1‑5 (MQ=255)                                                                                                                                          atatCACGCAACGCGTGATAAGCAAGTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTaa  <  1:818911/143‑1 (MQ=17)                                                                                                                                           |                                                                                                                                              TTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAA  >  NC_000913/4168203‑4168482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.