New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4168341	13 (0.290)	3 (0.070)	3/244	NT	19.4%	intergenic (+141/‑31)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu
	?	NC_000913	= 4168363	13 (0.310)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu

CTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGG  >  NC_000913/4168226‑4168503                                                                                                                                          |                                                                                                                                             cTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatttt                                                                                                                                         >  2:5702‑M2/1‑138 (MQ=255)  taagtcagattgTCTGATAGAGAGTGACAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACTCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc                                                                                                                                        >  2:795567‑M2/6‑137 (MQ=255)    acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt                                                                                                                                      >  2:550580‑M2/1‑135 (MQ=255)                tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTc                                                                                                                          <  2:435727/143‑1 (MQ=37)                    aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGCGATAAGCACTTTTCGTGTCCCCTTCGTCTaga                                                                                                                      >  1:399796/1‑143 (MQ=21)                    aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCAGAAGAGAATAAGGCCGTTCGCTGTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                                      >  2:781031/1‑143 (MQ=21)                      aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                                    >  1:585025/1‑143 (MQ=32)                          tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCa                                                                                                                >  2:195977/1‑143 (MQ=32)                           gAAAAGCAAGGCGTTTACGCGTTGGGAGTTAGGCTGACGACATTCATGCCCTTCTTTTTGTTTTAATTAAATCTCAATCTAGACGAAAATAGCACGCAACGGGTGATAAGCAAGTTTCGTGTCCCCTTCGTCTAGAGGCCCAg                                                                                                               <  1:122311/143‑1 (MQ=2)                                                                                               aaggCTCACCCGACACGAAACTATCACGCAGCGCGTGAGAAGCAATGTTCGCGTCCCCTCCGTCTAGAGGCCCAGGACACCGCCCTGTCGCGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga                                           <  2:329999/140‑1 (MQ=1)                                                                                                 agttCATCCTACACGAAAATATCACGCAACGAGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtgagt                                         <  1:252132/140‑1 (MQ=0)                                                                                                   cTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttccttaatagaaagcgaacggcctgattctcttcagcctcactcccaacacgtaaccgccttgcctttcacattctctcccc                                       <  2:152716‑M2/143‑104 (MQ=255)                                                                                                        ccTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtcgggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatcagacaatc                                  <  2:686066‑M2/143‑109 (MQ=255)                                                                                                             acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaacctgggg                             <  1:621784‑M2/143‑114 (MQ=255)                                                                                                                   atatCACGCAACGCGTGATAAGCAAGTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTaa                       <  1:818911/143‑1 (MQ=17)                                                                                                                       cACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtc                   >  1:158257/1‑143 (MQ=32)                                                                                                                            aaCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaa              >  1:639752/1‑143 (MQ=32)                                                                                                                               gcgTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACt           >  1:685803/1‑143 (MQ=33)                                                                                                                               gcgTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACt           <  1:2928/143‑1 (MQ=33)                                                                                                                                        gCAATTTTCGTGGCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCgg  <  1:829823/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                             CTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGG  >  NC_000913/4168226‑4168503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.