New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1914760 =	48 (1.060)	3 (0.070)	3/244	NT	6.5%	coding (57/2049 nt)	prc	tail‑specific protease
	?	NC_000913	1914786 =	42 (1.000)					coding (31/2049 nt)	prc	tail‑specific protease

GAGAACGGGTGAAGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTG  >  NC_000913/1914651‑1914926                                                                                                                                        |                                                                                                                                              gagaACGGGTGAAGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAAcgcg                                                                                                                                        >  2:476596/1‑143 (MQ=255)   gaACGGGTGAAGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTTATACCGGTATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGTTCTGCACTGCTATTGCAAGCAGGCCAGCTAACGCggc                                                                                                                                      >  1:76542/1‑142 (MQ=255)       gggCGAAGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGc                                                                                                                                  <  1:152921/143‑1 (MQ=255)             aGCGCTACGCTGCGCGCTCACTTACCGTCGCATGCTGCTTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTa‑aaa                                                                                                                           <  1:308797/143‑1 (MQ=255)             aGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTa‑aaa                                                                                                                           >  1:801440/1‑143 (MQ=255)               cgcgCCGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTa‑aaaaa                                                                                                                         <  1:669108/143‑1 (MQ=255)                 cgACGTTACGCGCTCACTTACCGGCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACa                                                                                                                       <  2:377121/143‑1 (MQ=255)                      ttACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCGAACGCGGTGAGCCTA‑AAAAACATGTTc                                                                                                                  >  1:422084/1‑143 (MQ=255)                       tACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTG‑AAAAGCATGTTCa                                                                                                                 >  1:761986/1‑143 (MQ=255)                            tcTCACTTACCCTCGCATGCTGCGTCTCTTCCTTTAATACCCGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCt                                                                                                            <  1:823570/142‑1 (MQ=255)                            gcTCACTTACCGTCGCCGGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCt                                                                                                            <  1:115578/143‑1 (MQ=255)                            gcTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGCATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCGGGCCGGCTAACGCGGTAAGCCTA‑AAAAACCTGTTCATGCCt                                                                                                            >  1:115228/1‑143 (MQ=255)                                       gTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTc                                                                                                 >  2:386742/1‑143 (MQ=255)                                            aTGCCGCGTCTCTCCCGTGAATCCCGGAATTGCATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGttt                                                                                            <  1:222566/143‑1 (MQ=255)                                                tgcGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTCCAGCGAAGGTCTGCCCTGCTATTGCGAGCAGGCCAGCTAACGCGGTTAGCCTC‑ACACACATGCTCTTGCCCGGCCGGCCCACCAGTTCAgg                                                                                        >  1:324766/1‑142 (MQ=255)                                                tgcGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGa                                                                                        <  1:29172/143‑1 (MQ=255)                                                 gcGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGaa                                                                                       <  1:617289/143‑1 (MQ=255)                                                    tctcTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAacac                                                                                    >  1:146144/1‑143 (MQ=255)                                                       ctTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTCCAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAg                                                                                 <  2:656234/143‑1 (MQ=255)                                                       ctTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCCGACCCCCAg                                                                                 >  1:730463/1‑143 (MQ=255)                                                         tgaaacggaggccgggccaggcatgaacatgttttttaggcttaccgcgttagCTGGCCTGCTATTGCAAGCAGGCCAGCTAAcgc                                                                                                                                         >  2:637817‑M1/54‑86 (MQ=255)                                                         tgaaacggaggccgggccaggcatgaacatgttttttaggcttaccgcgttagCTGGCCTGCTATTGCAAGCAGGCCAGCTAAcgc                                                                                                                                         <  1:637817‑M1/33‑1 (MQ=255)                                                          ccTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCCATCAATTCAT‑TACTTCTCTGGGCGGGCCTCCGTCTCAGAACACCAGgtg                                                                              >  1:199482/1‑143 (MQ=255)                                                           cTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGgtgt                                                                             <  1:250044/143‑1 (MQ=255)                                                            tttAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGCACACCAGGTGtt                                                                            >  2:809188/1‑143 (MQ=255)                                                            tttAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGtt                                                                            >  1:861360/1‑143 (MQ=255)                                                              tAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCt                                                                          >  2:684157/1‑143 (MQ=255)                                                              gagtACCGGAATTTGATCAGCACGCGTGATAGCGTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAACCATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCTGGTGTTCt                                                                          <  2:113594/140‑1 (MQ=255)                                                                aTACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTgc                                                                        <  1:625937/143‑1 (MQ=255)                                                                  aCCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTgcgc                                                                      <  1:476596/143‑1 (MQ=255)                                                                    cGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAAAGCGGTAAGCCTA‑AAAAACATGGTCATGCCTGACCCGGCCTCCGTTTCAGAACCCCAGGTGTTCTgcgcgc                                                                    >  1:58271/1‑143 (MQ=255)                                                                             ctCAGCACCGGTGATATCTTCTACAGCACAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTGTCAGAACACCAGGTGTTCTGCGCGCACAATCaaa                                                           <  2:370700/142‑1 (MQ=255)                                                                              tCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCCAGCAGGCCAGCTAACGCGGTAAGCCTC‑AAAAACCTGCTCATGCCTGGCCCGGCCCCCGTTTCAGAACACCAGTCGCTCTGCGCCCACACTccacg                                                          >  2:752680/1‑139 (MQ=255)                                                                                                tctACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCACAGACATCCCCGCATTCAGCt                                        >  1:353975/1‑143 (MQ=255)                                                                                                 ctACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTCAAGAACACCAGCAGCTCAGCGAGCACAATCAATGCCATAGCAGAATTCAGCTg                                       >  2:378214/1‑143 (MQ=255)                                                                                                  tACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGT‑AGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGCATTCAGCTgga                                     >  1:852823/1‑143 (MQ=255)                                                                                                    cAGGGAAGGTCTGGCCTGCTATGGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTggac                                    <  2:76542/143‑1 (MQ=255)                                                                                                     aGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCATGGCGGGAGGTGCTTTTAAGAACACCAGATGTTCTGCGCGCACAATCAAAGACGTACCCGAATTCAGCGggacg                                   >  2:632500/1‑143 (MQ=255)                                                                                                      gCGAAGGTCTGGCCTGCTATTGCGAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTCTATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTggacgc                                  <  1:448244/143‑1 (MQ=255)                                                                                                      gCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAACGACCTCCCCGCATTCAGCTggacgc                                  >  1:574331/1‑143 (MQ=255)                                                                                                       gcgttagctggcctgcttgcaatagcaggccagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCa                                                                                          <  1:637817‑M2/53‑1 (MQ=255)                                                                                                       gcgttagctggcctgcttgcaatagcaggccagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCa                                                                                          >  2:637817‑M2/34‑86 (MQ=255)                                                                                                       cGAAGGTCAGGGCTGCCATTGCAAGCAGGCGAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTggacgcg                                 <  2:828927/143‑1 (MQ=255)                                                                                                        gAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCCTGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGGGGTCTGCGCGCACCAACAAAGACCGACCCGAATTCAGCTggacgccg                                >  2:512058/1‑141 (MQ=255)                                                                                                         aaGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAACACACGACCATGTTTGGTCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTggacgcgga                               >  1:243964/1‑143 (MQ=255)                                                                                                            gTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTGCTGCGCGCACAATCAAAGACACACCCGAATTCAGCTggacgcggacgc                            >  2:820761/1‑143 (MQ=255)                                                                                                               tggcctgcttgcaatagcaggccagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGt                         >  1:95690‑M2/26‑143 (MQ=255)                                                                                                                    TGCTATTGCAAGCAGGCCAGCTTACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTg                    >  2:752832‑M1/1‑143 (MQ=255)                                                                                                                              agcaggccagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTa          <  2:861360‑M2/133‑1 (MQ=255)                                                                                                                               gcaggccagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCGTTGGTGATTTCTaa         <  1:705902‑M2/134‑1 (MQ=255)                                                                                                                                 aggccagGTAACGCGGTAAGCCTA‑AAGAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATa       <  2:340952‑M2/136‑1 (MQ=255)                                                                                                                                     cagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCACTGACATACCCTAATTCAGCTGGACGCGGACGCCGTCTTTGATAATTTCTAATACGGt   >  1:48829‑M2/4‑143 (MQ=255)                                                                                                                                     cagCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTCTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGt   <  1:122709‑M2/140‑1 (MQ=255)                                                                                                                                      agCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTg  <  2:801440‑M2/141‑1 (MQ=255)                                                                                                                                      agCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTg  <  1:841164‑M2/141‑1 (MQ=255)                                                                                                                                        |                                                                                                                                              GAGAACGGGTGAAGCGCGACGTTACGCGCTCACTTACCGTCGCATGCTGCGTCTCTTCCTTTAATACCGGAATTTGATCAGCACGCGTGATATCTTCTACAGCGAAGGTCTGGCCTGCTATTGCAAGCAGGCCAGCTAACGCGGTAAGCCTA‑AAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTG  >  NC_000913/1914651‑1914926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.