mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 962,670 | 0 | A | G | 50.9% | ‑2.6 / 63.8 | 54 | K226E (AAA→GAA) | rpsA | 30S ribosomal subunit protein S1 |
| * | NC_000913 | 2,392,615 | 0 | A | . | 41.7% | 56.0 / 52.6 | 38 | coding (427/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M |
| * | NC_000913 | 2,392,617 | 0 | A | . | 41.7% | 55.4 / 52.6 | 38 | coding (425/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M |
| * | NC_000913 | 2,392,616 | 0 | G | . | 39.5% | 49.3 / 52.9 | 38 | coding (426/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.9% | 52.3 / 52.5 | 64 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,019,309 | 0 | C | A | 35.8% | 64.3 / 49.4 | 83 | D249Y (GAT→TAT) | ompA | outer membrane porin A |
| Marginal new junction evidence (lowest skew 10 of 75 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 568559 = | 2907 (44.590) | 85 (1.360) | 29/270 | 1.5 | 3.0% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 2687 (43.050) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 570695 = | 3220 (49.390) | 46 (0.740) | 24/268 | 2.1 | 1.5% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2851 (46.010) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 569159 | 2792 (42.820) | 80 (1.330) | 21/260 | 2.5 | 2.9% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 2788 (46.380) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 568678 = | 3004 (46.080) | 31 (0.500) | 21/268 | 2.7 | 1.1% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2689 (43.400) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 2392618 = | 29 (0.440) | 18 (0.300) | 16/262 | 3.7 | 41.4% | coding (424/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M |
| ? | NC_000913 | = 2392614 | 24 (0.400) | coding (428/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M | |||||
| * | ? | NC_000913 | = 572325 | 2788 (42.760) | 24 (0.400) | 14/262 | 4.3 | 0.95% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2415 (39.870) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 572471 | 59 (0.900) | 14 (0.280) +34 bp |
10/214 | 4.4 | 28.8% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 32 (0.490) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 572471 | 59 (0.900) | 14 (0.280) +34 bp |
10/214 | 4.4 | 28.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | 1095438 = | 34 (0.520) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 572316 = | 2708 (41.540) | 31 (0.510) | 12/262 | 4.9 | 1.2% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 2414 (39.850) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572405 = | 1266 (19.420) | 11 (0.220) +31 bp |
9/220 | 5.0 | 1.1% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||