New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	167280 =	NA (NA)	3 (0.100)	3/242	NT	NA	intergenic (+16/‑204)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	167307 =	NA (NA)					intergenic (+43/‑177)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor

TCAGGCAATCCGTTTGATCAGTCTTCTCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAAT  >  NC_000913/167139‑167416                                                                                                                                              |                                                                                                                                         acgagaatgattattataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTa                                                                                                                                         >  1:410825‑M1/142‑143 (MQ=255)  cgagaatgattattataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTAc                                                                                                                                        >  1:427489‑M1/141‑143 (MQ=255)     gCAATCCGTTTGATCAGTCTTCTCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCgg                                                                                                                                     >  2:586752/1‑143 (MQ=255)      cAATCCGTCTGATCAGTCTTCTCCGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGCTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGa                                                                                                                                    <  2:288579/143‑1 (MQ=255)      aatgattattataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGa                                                                                                                                    >  2:174559‑M1/137‑143 (MQ=255)       aaTCCGTTTGATCAGTCTTCTCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGAt                                                                                                                                   >  2:269852/1‑143 (MQ=255)        tgtttattataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATg                                                                                                                                  >  1:3380‑M1/135‑143 (MQ=255)        tgattagtataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATg                                                                                                                                  >  1:389468‑M1/135‑143 (MQ=255)          attattataaagataagataatattcgaaacgctggcgggttcgcaagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATGGc                                                                                                                                <  2:67047‑M1/11‑1 (MQ=255)                  tCAGTCTTCTCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGcc                                                                                                                        >  2:288604/1‑143 (MQ=255)                     gataggagactattcgaatcggttgccggttcgcaagcggtacgccatctgagcgttcctgaagggttaataaacaaccagatgaaaataaagggttaatatcttagatgggatgttatttTACCGGATGGCGAGTTGCCATc                                                                                                                     >  2:419406‑M1/122‑143 (MQ=255)                        ttctCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCGTCAgg                                                                                                                  >  1:171057/1‑143 (MQ=255)                            cAGCCGCAGCAACGGCCGCAACAGCAACCTGCGCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTaaa                                                                                                              <  2:126142/143‑1 (MQ=255)                                 gcagcaACAGCCGCAACAGCAACCTGCCCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGAGCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAAc                                                                                                         <  2:281712/143‑1 (MQ=255)                                                       aagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAAccc                                                                                   <  1:50540‑M1/56‑1 (MQ=255)                                                         tGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCctt                                                                                 >  2:409487/1‑143 (MQ=255)                                                              aGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTGAAGTAACATCCCATCTCAGACATTAACCctgtcttt                                                                            >  1:288726/1‑143 (MQ=255)                                                              aGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCctttcttt                                                                            <  1:449760/143‑1 (MQ=255)                                                                      cAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTgg                                                                    <  1:222418/143‑1 (MQ=255)                                                                          atgACGGCGACGCGGCAGCCGGTTGGATCAAGGATATGGCTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCTGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGgttgt                                                                <  2:473309/141‑1 (MQ=255)                                                                           aGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGgttgtt                                                               >  1:23178/1‑143 (MQ=255)                                                                                  caaggTGTAGCCGGTTGGACCAAGGATATGTTGAGTCGTTATTAATGGCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCTGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAAc                                                        <  1:87232/140‑1 (MQ=255)                                                                                        taataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCa                                                  >  2:50540‑M1/55‑143 (MQ=255)                                                                                            ccGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAATCCTTCAGGaa                                              >  1:228578/1‑143 (MQ=255)                                                                                            ccGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAAAATGGAATAATAGAGACTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGaa                                              >  1:640890/1‑143 (MQ=255)                                                                                              ggTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATACGGTAAAATAACATCCCATCTAAGCTCTTAACCCATTCTATTCATCCGGTTGTCTATTCACCCTTCAGGAACg                                            >  2:492256/1‑143 (MQ=255)                                                                                                    aTCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGa                                      <  1:288604/143‑1 (MQ=255)                                                                                                    aTCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTATATTAACCCTTCAGGAACGCCCaca                                      >  2:155800/1‑141 (MQ=255)                                                                                                     tCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGGTTATTAACCCTTCAGGCACGCTCAGAt                                     >  2:367117/1‑143 (MQ=255)                                                                                                       aaGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTg                                   >  2:358767/1‑143 (MQ=255)                                                                                                                tttGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCt                          >  2:185087/1‑143 (MQ=255)                                                                                                                     tagtaATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGa                     >  1:613320/1‑143 (MQ=255)                                                                                                                      agtaATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGaa                    >  1:255923/1‑143 (MQ=255)                                                                                                                            tAACATCTAAGCGGGAAATACCGGATGGCGAGTTGCCAGCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGcc              <  2:270325/143‑1 (MQ=255)                                                                                                                                   tatgcttGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCCTCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGttt       <  2:503735/137‑1 (MQ=255)                                                                                                                                   tAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGttt       >  2:509289/1‑143 (MQ=255)                                                                                                                                        gTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATAACGACTGGGTGGGTAGCCATTCCTTGGCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAat  <  1:440011/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                         TCAGGCAATCCGTTTGATCAGTCTTCTCAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAAT  >  NC_000913/167139‑167416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.