New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	167280 =	NA (NA)	3 (0.100)	3/242	NT	NA	intergenic (+16/‑204)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	167307 =	NA (NA)					intergenic (+43/‑177)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor

CAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAATCATTCTCGT  >  NC_000913/167166‑167447                                                                                                                                              |                                                                                                                                             cAGCCGCAGCAACGGCCGCAACAGCAACCTGCGCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTaaa                                                                                                                                             <  2:126142/143‑1 (MQ=255)      gcagcaACAGCCGCAACAGCAACCTGCCCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGAGCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAAc                                                                                                                                        <  2:281712/143‑1 (MQ=255)                            aagcggtacgcaatctgagcgttcctgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAAccc                                                                                                                  <  1:50540‑M1/56‑1 (MQ=255)                              tGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCctt                                                                                                                >  2:409487/1‑143 (MQ=255)                                   aGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTGAAGTAACATCCCATCTCAGACATTAACCctgtcttt                                                                                                           >  1:288726/1‑143 (MQ=255)                                   aGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCctttcttt                                                                                                           <  1:449760/143‑1 (MQ=255)                                           cAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTgg                                                                                                   <  1:222418/143‑1 (MQ=255)                                               atgACGGCGACGCGGCAGCCGGTTGGATCAAGGATATGGCTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCTGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGgttgt                                                                                               <  2:473309/141‑1 (MQ=255)                                                aGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGgttgtt                                                                                              >  1:23178/1‑143 (MQ=255)                                                     tgaagggttaataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttattttaccggatggcaactcgccatccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTttatta                                                                                         >  2:50540‑M2/90‑143 (MQ=255)                                                       caaggTGTAGCCGGTTGGACCAAGGATATGTTGAGTCGTTATTAATGGCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCTGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAAc                                                                                       <  1:87232/140‑1 (MQ=255)                                                             taataaacaaccagatgaaaagaaagggttaatatcttagatgggatgttatttTACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCa                                                                                 >  2:50540‑M1/55‑143 (MQ=255)                                                                 ccGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAATCCTTCAGGaa                                                                             >  1:228578/1‑143 (MQ=255)                                                                 ccGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAAAATGGAATAATAGAGACTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGaa                                                                             >  1:640890/1‑143 (MQ=255)                                                                   ggTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATACGGTAAAATAACATCCCATCTAAGCTCTTAACCCATTCTATTCATCCGGTTGTCTATTCACCCTTCAGGAACg                                                                           >  2:492256/1‑143 (MQ=255)                                                                         aTCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGa                                                                     <  1:288604/143‑1 (MQ=255)                                                                         aTCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTATATTAACCCTTCAGGAACGCCCaca                                                                     >  2:155800/1‑141 (MQ=255)                                                                          tCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGGTTATTAACCCTTCAGGCACGCTCAGAt                                                                    >  2:367117/1‑143 (MQ=255)                                                                            aaGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTg                                                                  >  2:358767/1‑143 (MQ=255)                                                                                     tttGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCt                                                         >  2:185087/1‑143 (MQ=255)                                                                                      gggttaatatcttagatgggatgttattttaccggatggcaactcgccatccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCtt                                                        <  1:50540‑M2/87‑1 (MQ=255)                                                                                          tagtaATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGa                                                    >  1:613320/1‑143 (MQ=255)                                                                                           agtaATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGaa                                                   >  1:255923/1‑143 (MQ=255)                                                                                                 tAACATCTAAGCGGGAAATACCGGATGGCGAGTTGCCAGCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGcc                                             <  2:270325/143‑1 (MQ=255)                                                                                                        tatgcttGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCCTCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGttt                                      <  2:503735/137‑1 (MQ=255)                                                                                                        tAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGttt                                      >  2:509289/1‑143 (MQ=255)                                                                                                             gTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATAACGACTGGGTGGGTAGCCATTCCTTGGCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAat                                 <  1:440011/143‑1 (MQ=255)                                                                                                             cagcaacACCGGATGGCGCGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAat                                 >  1:169479‑M1/8‑143 (MQ=255)                                                                                                                      ctgaaggCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCGTTCTTTTCTGCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATAttatctta                        <  2:560831/138‑1 (MQ=255)                                                                                                                        gatggcaactcgccatccggtaAAATAACATCCCATCTAAGATATTAACCCTTTATTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATGGCGTACCGCTTGCGAACCGGCAACCGATTCGAATAgtctcctatc                      >  2:419406‑M2/23‑143 (MQ=255)                                                                                                                          TGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTAGTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTatcttatctt                    >  1:447891‑M1/1‑143 (MQ=255)                                                                                                                              gAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCATTCAGGAACGCTCAGATTGCGTACCGCTTGCAAACCCGCCAGCCTTTCGAATATTATCTTCTCTCtata                >  2:404576/1‑143 (MQ=255)                                                                                                                                  tGCCATCCGGTAAAATAACACCCCATCTAAGATACTAACGCTGGGTTTGCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTAtaataa            <  2:626647/143‑1 (MQ=255)                                                                                                                                   gccatccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATaataat           <  2:67047‑M2/132‑1 (MQ=255)                                                                                                                                     catccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATACTAATCa         >  1:389468‑M2/10‑143 (MQ=255)                                                                                                                                     catccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAAACa         >  1:3380‑M2/10‑143 (MQ=255)                                                                                                                                       tccggtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAATCAtt       >  2:174559‑M2/8‑143 (MQ=255)                                                                                                                                           gtaAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAATCATTCTCg   >  1:427489‑M2/4‑143 (MQ=255)                                                                                                                                            taAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAATCATTCTCGt  >  1:410825‑M2/3‑143 (MQ=255)                                                                                                                                              |                                                                                                                                             CAGCCGCAGCAACAGCCGCAACAGCAACCTGCTCAGCAAGAGCAGAAAGACAGCGACGGTGTAGCCGGTTGGATCAAGGATATGTTTGGTAGTAATTAACATCTAAGCGTGAAATACCGGATGGCGAGTTGCCATCCGGTAAAATAACATCCCATCTAAGATATTAACCCTTTCTTTTCATCTGGTTGTTTATTAACCCTTCAGGAACGCTCAGATTGCGTACCGCTTGCGAACCCGCCAGCGTTTCGAATATTATCTTATCTTTATAATAATCATTCTCGT  >  NC_000913/167166‑167447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.