New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	25 (0.770)	3 (0.100)	3/244	NT	12.2%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC
	?	NC_000913	1417483 =	20 (0.660)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC

CACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGA  >  NC_000913/1417316‑1417591                                                                                                                                               |                                                                                                                                      cacaGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCa                                                                                                                                       >  1:200195/1‑143 (MQ=255)   cacgacggcGTCAGGTTCCCCGGATGATTTTTTCGCTTTCCGTAACCGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATa                                                                                                                                     <  1:539704/140‑1 (MQ=255)   caGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATa                                                                                                                                     <  1:114409/143‑1 (MQ=255)     aggcaacgtaaaaacacttgatgaaggtgtcaaaaaaatgtgcctggtgcatatcggaaagaatctgcccgcagaaaaaaaagccgaatttctggcagctctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGc                                                                                                                                   <  2:243484‑M1/5‑1 (MQ=255)        cgacgTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTg                                                                                                                                >  2:209127/1‑143 (MQ=255)        cgacgTCAGGTTCACCGGATGATTTTTTCGCTTGCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTg                                                                                                                                <  2:384166/143‑1 (MQ=255)        caacgtaaaaacacttgatgaaggtgtcaaaaaaatgtgcctggtgcatatcggaaagaatctgcccgcagaaaaaaaagccgaatttctggcaacactaaaggcattgtaattaaaaggcggaatctggaagaaATagccgg                                                                                                                                <  2:346461‑M1/8‑3 (MQ=255)                   tCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCa                                                                                                                     <  1:214742/143‑1 (MQ=255)                     aCCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTATAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAgg                                                                                                                   <  2:78094/143‑1 (MQ=255)                       cGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCCGATTAAAATTCGTTTTGTTCAGTGTATGTTCTTGCCGGATACACACTGTTCATAGCCTGCGCCATCCGCAGGCt                                                                                                                 >  1:194627/1‑143 (MQ=255)                                    cGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAgct                                                                                                    >  1:551014/1‑141 (MQ=255)                                    aaaaaaatgtgcctggtgcatatcggaaagaatctgcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAt                                                                                                    <  1:589150‑M1/36‑1 (MQ=255)                                     gCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAtt                                                                                                   >  2:464349/1‑143 (MQ=255)                                         tCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCAc                                                                                               <  2:507366/143‑1 (MQ=255)                                                cAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCCAATCTAATTAAAATTCGTTTTGTTCAGTGAATGATTTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTaa                                                                                        <  1:639098/143‑1 (MQ=255)                                                 aGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAt                                                                                       >  2:40698/1‑143 (MQ=255)                                                   gAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAttt                                                                                     >  1:243484/1‑143 (MQ=255)                                                       agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCCGAATAAAACTCGTGTTGTTCAGTGAATTATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                 <  1:402671/143‑1 (MQ=255)                                                         tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTGGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGc                                                                               >  1:91786/1‑143 (MQ=255)                                                           gggaaaggaactgccagcagaaaaaaaagcagaagttctggcaactataattgcaatgaaattaaaaggtgaaatctgcaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCaa                                                                             >  2:399595‑M1/85‑143 (MQ=255)                                                                gtgCTCATTGTTTTTTAGCCTCATCTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTaga                                                                        <  2:354743/143‑1 (MQ=255)                                                                  gCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCTGGATACGTACTGTTCGTAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGt                                                                      <  1:59596/143‑1 (MQ=255)                                                                  gCTCATTGTTTTTTAACCTCAACTCAGATAAAAATACGCTTAGTTCAGCGAATGATCTTGCCGGATACACACTGTTCATAACCTACGCCATACGCAGGCTATTTCTTTCAGATTTCACCTCTTAATTTCATCGCAACTAGAGt                                                                      >  2:259674/1‑143 (MQ=255)                                                                       gcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCa                                                                 >  2:589150‑M1/73‑143 (MQ=255)                                                                                    tCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTTGGCttt                                                    >  2:486260/1‑143 (MQ=255)                                                                                          cAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc                                              <  2:113063/143‑1 (MQ=255)                                                                                              ttAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCATGCATTCGGCCTTTTTTTcagtc                                          >  2:159926/1‑139 (MQ=255)                                                                                                aacactCGTTTCGTCCAGTGAATGCTCTTGCCTGCTACACGCTGGTCATAGCCTGCGCCATACGCAGGCTATGTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCggg                                        <  1:306949/138‑1 (MQ=255)                                                                                                        ttttGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCCTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt                                >  2:470868/1‑143 (MQ=255)                                                                                                            gTTCAGTGAATGCTCTTGCCGGATACACACTGTTCATCGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCTTTGCAATTAGAGTTGCCAGAAATTCGTCTTTTTTTTCTGCGGGCAGATTCTTTcc                            <  2:298346/143‑1 (MQ=255)                                                                                                                            tGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGcac            <  2:393806/143‑1 (MQ=255)                                                                                                                                    acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt    <  1:177792/143‑1 (MQ=255)                                                                                                                                      acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGa  <  2:240016/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                      CACAGGACGACGTCAGGTTCACCGGATGATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGA  >  NC_000913/1417316‑1417591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.