| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1417458 = | 25 (0.770) | 3 (0.100) | 3/244 | NT | 12.2% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC |
| ? | NC_000913 | 1417483 = | 20 (0.660) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC | |||||
CGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCT > NC_000913/1417351‑1417620 | cGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAgct > 1:551014/1‑141 (MQ=255)aaaaaaatgtgcctggtgcatatcggaaagaatctgcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAt < 1:589150‑M1/36‑1 (MQ=255) gCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAtt > 2:464349/1‑143 (MQ=255) tCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCAc < 2:507366/143‑1 (MQ=255) cAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCCAATCTAATTAAAATTCGTTTTGTTCAGTGAATGATTTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTaa < 1:639098/143‑1 (MQ=255) aGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAt > 2:40698/1‑143 (MQ=255) gAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAAttt > 1:243484/1‑143 (MQ=255) agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCCGAATAAAACTCGTGTTGTTCAGTGAATTATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt < 1:402671/143‑1 (MQ=255) tGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTGGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGc > 1:91786/1‑143 (MQ=255) gggaaaggaactgccagcagaaaaaaaagcagaagttctggcaactataattgcaatgaaattaaaaggtgaaatctgcaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCaa > 2:399595‑M1/85‑143 (MQ=255) gtgCTCATTGTTTTTTAGCCTCATCTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTaga < 2:354743/143‑1 (MQ=255) gCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCTGGATACGTACTGTTCGTAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGt < 1:59596/143‑1 (MQ=255) gCTCATTGTTTTTTAACCTCAACTCAGATAAAAATACGCTTAGTTCAGCGAATGATCTTGCCGGATACACACTGTTCATAACCTACGCCATACGCAGGCTATTTCTTTCAGATTTCACCTCTTAATTTCATCGCAACTAGAGt > 2:259674/1‑143 (MQ=255) gcccgcagaaaaaaaagccgaatttctggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCa > 2:589150‑M1/73‑143 (MQ=255) tCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTTGGCttt > 2:486260/1‑143 (MQ=255) cAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTc < 2:113063/143‑1 (MQ=255) ttAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCATGCATTCGGCCTTTTTTTcagtc > 2:159926/1‑139 (MQ=255) aacactCGTTTCGTCCAGTGAATGCTCTTGCCTGCTACACGCTGGTCATAGCCTGCGCCATACGCAGGCTATGTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCggg < 1:306949/138‑1 (MQ=255) tggcaactctaattgcaatgaaattaaaaggtgaaatctgaaagaaatagcctgcgtatggcgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGc > 2:589150‑M2/72‑143 (MQ=255) ttttGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCCTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCt > 2:470868/1‑143 (MQ=255) gTTCAGTGAATGCTCTTGCCGGATACACACTGTTCATCGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCTTTGCAATTAGAGTTGCCAGAAATTCGTCTTTTTTTTCTGCGGGCAGATTCTTTcc < 2:298346/143‑1 (MQ=255) ttgcaatgaaattaaaaggtgaaatctgaaagaaatagcctgcgtatggcgcaggctatTTCTTGCAGATTTCACCTTTTAATTTCATTGCAATTATAGTTGCCAGAACTTCTGCTTTTTTTTCTGCTGGCAGTTCCTTtccc > 2:399595‑M2/60‑142 (MQ=255) tGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGcac < 2:393806/143‑1 (MQ=255) atctgaaagaaatagcctgcgtatggcgcaggctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt < 1:589150‑M2/107‑1 (MQ=255) acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAttttttt < 1:177792/143‑1 (MQ=255) acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGa < 2:240016/143‑1 (MQ=255) CCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAg > 1:209127‑M1/1‑143 (MQ=255) CCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATCGCAACTAGAGTTGCCAGCAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGCTATGCACCAGGCCCACCTTTTTGCCACCTCCCTCAAg < 2:127575‑M1/143‑1 (MQ=255) CTGCGCCATGCGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAgt > 1:464349‑M1/1‑143 (MQ=255) GCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGttt > 2:185469‑M1/1‑143 (MQ=255) cATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACTAGGCATATTTTTTTGACAACTTCATCAGGTGttttt > 2:54151/1‑143 (MQ=255) ccggctatTTCTTCCAGATTCCGCCTTTTAATTACAATGCCTTTAGTGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTg < 2:346461‑M2/135‑1 (MQ=255) gctatTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGCTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCt < 2:243484‑M2/138‑1 (MQ=255) | CGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCT > NC_000913/1417351‑1417620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |