New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	745824 =	27 (0.830)	3 (0.100)	3/254	NT	10.5%	coding (660/735 nt)	pxpA	5‑oxoprolinase component A
	?	NC_000913	745854 =	25 (0.800)					coding (690/735 nt)	pxpA	5‑oxoprolinase component A

GAAGAACAGGCGCTGGCGCAAACGCTGGAGATGGTGCAACACGGCAGAGTCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGATCAAAGGCAA  >  NC_000913/745714‑745996                                                                                                                                             |                                                                                                                                               gcacggcggatctccgggccttcaggcatggtgatatccttttttcattctttattaatcggggttatgctgcgacaacactccccttttcggcaaatgcagagcgtagtCGGCGAGCACGCACTGGCGTTCGCCCGCCGACt                                                                                                                                              >  1:541877‑M1/111‑143 (MQ=255)    gaaCAGGCGCTGGCGCAAACGCTGGAGATGGTGCAACACGGCAGAGTCAAAAGTATCACCGGCAAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGGTCGCCCGCCGACTACg                                                                                                                                           >  1:241911/1‑143 (MQ=255)         ggagcgggCGAAAACGCTGGAGATGGTGCGACACGGCAGAGTCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTg                                                                                                                                      <  2:237696/137‑1 (MQ=255)          gtccccgggccttcgggcatggtgatatccttttttcattctttattaatcggggttatgctgcgacaacaatccccttttcggaaaatgcagagcgtagtCGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGc                                                                                                                                     >  1:54444‑M1/102‑143 (MQ=255)              ccgggccttcaggcatggtgatatccttttttcattctttattaatcggggttatgctgcgacaacaatccccttttcggcaaatgcagagcgtagtCGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCAttt                                                                                                                                 >  1:82460‑M1/98‑143 (MQ=255)                gcgcAAACGCTGGAGATGGTGCAACACGGCAGAGTCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGc                                                                                                                               <  2:37637/143‑1 (MQ=255)                        gCTGGAGATGGTGCAACACGGCAGAGTCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAgg                                                                                                                       >  1:71764/1‑143 (MQ=255)                                   tGCAACACGGCAGAGTCAAAAGTATCACCGGCGACTGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCTCGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTc                                                                                                            >  1:239208/1‑143 (MQ=255)                                                  tCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCCCTGCATTTGCCGAAAACGGGATGGGTGTCGCAGCATAAgcccca                                                                                             >  2:37111/1‑141 (MQ=255)                                                   cAACAGTATCACCGGCGAGTGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGAt                                                                                            <  1:63135/143‑1 (MQ=255)                                                            cACCGGCGAATGGGCAACGGTCGCGGCGCATCCGGTCTTCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGa                                                                                   <  1:436351/143‑1 (MQ=255)                                                              ccGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCGGCCGGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGCTTAATCAAGAAt                                                                                 >  1:476512/1‑143 (MQ=255)                                                                  cGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTACATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGaaa                                                                             >  2:599359/1‑143 (MQ=255)                                                                   gAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACACCGCGCTGCATTTGCTGAGAAGTTGATCGTTGTCGCAGCATAACCCCGCTTAATAAAAAATGaaaa                                                                            >  1:329330/1‑143 (MQ=255)                                                                      aggcgtccGGTCGGGCCGCAAACGGTTGGCCTGCAGGTGGACGGAGTGCCGTCACGGTGGTTCGCTCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAg                                                                         <  2:285141/136‑1 (MQ=255)                                                                         gCAACGGTCGCGGCGCAAACGGTCTTCCTGCATGGCGACAGCGAGCACGCACTGCCGTTCGCCCGCCGACTACGGCATGCATTTGCCAAAACGGGCAATGTTATCGCCGCATACACCCGCTTAATACAGAATAaaaagaagaa                                                                      >  2:1376/1‑137 (MQ=255)                                                                                    ggcgCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAACGGGGATTGTTGTCGCAGCATAACCCCGGTTAATAAAGAATGAAAAAAGGATCTCACCATGcc                                                           >  1:348357/1‑143 (MQ=255)                                                                                         acaCGGGCTGCGTGCATGGAAACTTCTAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAg                                                      <  1:606237/141‑1 (MQ=255)                                                                                         aaaCCGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCAAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAg                                                      <  1:90325/143‑1 (MQ=255)                                                                                          aaCGGGCGGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGTCGAAAAGAGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAgg                                                     <  1:30223/143‑1 (MQ=255)                                                                                               aaatgcagagcgtagtcggcgggcgaacgccagtgcgtgctcgccgACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCgg                                                >  1:82460‑M2/47‑143 (MQ=255)                                                                                                 agcgtgcATCGCGACGGCGGGCACGCACGGGCGATCACGAGAGAACCACGCTCGGCATTAGACGAAAATGAAAAAGATGTGGTAGCCCACCTCCGATTAAAAAAAAAAGAAAAAAGGATATCACCATGCCTGAAGGCCCGgag                                              <  2:633266/139‑1 (MQ=255)                                                                                                   gcagagcgtagtcggcgggcgaacgccagtgcgtgctcgccgACTACGCTCTGCATTTTCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCCGAAGGCCCggggac                                            >  1:54444‑M2/43‑142 (MQ=255)                                                                                                   cctgcATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAGGGGGCCTGTTGTCGCAGCATAACCCCGATCAATAAAGAATGAAAAAAGGATATCACCATGCCTGACAGCCCAGAGAt                                            >  2:186417/1‑143 (MQ=255)                                                                                                    ctgcATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTCGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATc                                           >  2:563100/1‑143 (MQ=255)                                                                                                            agtcggcgggcgaacgccagtgcgtgctcgccgACTACGCTCTGCATTTGCCGAAAAGGGGAGTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGc                                   >  1:541877‑M2/34‑143 (MQ=255)                                                                                                                  CGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATCGTTGTCGCAGCATAACCCCGATTAATAAAGAATGACAAAAGGATATCACCATCCCCGAAGGCCAGGAGATCCAACGCGcagccga                             <  2:573646‑M1/143‑4 (MQ=255)                                                                                                                    aGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCACAGTGCAGAGGATa                           >  2:438464/1‑143 (MQ=255)                                                                                                                    aGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATACGCCGTGCAGCGGATa                           >  1:165527/1‑143 (MQ=255)                                                                                                                      cacggacTGGCGTTGGCCCGCCGGCTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCAGGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAAc                         <  1:198438/143‑1 (MQ=255)                                                                                                                      cacgcacTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGAACCCCCGTGCAGCGGATacc                         >  2:508355/1‑141 (MQ=255)                                                                                                                              ggCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATGAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAggc                 <  1:282840/143‑1 (MQ=255)                                                                                                                                     gcccgccGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGAGTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGATc          >  1:622419/1‑143 (MQ=255)                                                                                                                                      cccgccGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGCTCa         >  2:461213/1‑143 (MQ=255)                                                                                                                                        cgccgACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGATCaaa       <  1:498628‑M2/138‑1 (MQ=255)                                                                                                                                             aCTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGATCAAAGGCaa  >  1:4683/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                               GAAGAACAGGCGCTGGCGCAAACGCTGGAGATGGTGCAACACGGCAGAGTCAAAAGTATCACCGGCGAATGGGCAACGGTCGCGGCGCAAACGGTCTGCCTGCATGGCGACGGCGAGCACGCACTGGCGTTCGCCCGCCGACTACGCTCTGCATTTGCCGAAAAGGGGATTGTTGTCGCAGCATAACCCCGATTAATAAAGAATGAAAAAAGGATATCACCATGCCTGAAGGCCCGGAGATCCGCCGTGCAGCGGATAACCTGGAGGCGGCGATCAAAGGCAA  >  NC_000913/745714‑745996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.