New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 86076	29 (0.890)	3 (0.100)	3/256	NT	9.7%	coding (447/1725 nt)	ilvI	acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit
	?	NC_000913	= 86085	28 (0.890)					coding (456/1725 nt)	ilvI	acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit

CTCGTTGATAGGTTACGATGCCTTTCAGGAGTGCGACATGGTGGGGATTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGTTCTTACAATCCCACTACTACCGGACATAAAGGGCA  >  NC_000913/85944‑86213                                                                                                                                              |                                                                                                                                 cTCGTTGATAGGTTACGTTGTCTTTCAGTTGTGCGAGATGGTGGGGATTTCGCGATCGGTGGTTAAACACAGTTGTCTGGGTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGTTTTTCTGGCTGGCGGCAAGTGGTc                                                                                                                                 >  2:166477‑M2/1‑142 (MQ=255)             ttACGACGCCTTTCGGGAGGGCGACATGGTGGGGGTTTCGCGACCGGTGGTTAAACAGAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCag                                                                                                                     <  2:644050/143‑1 (MQ=255)                cGATGCCTTTCAGGAGTGCGACATGGTGGGGATTACGCGCCCGGTGGTTAAACACAGTTTTCTGGTTAGGTTAGCGGAAGACATTCCGCAGGCGCTAACACAGACTTGCTGGCTGGCGCCAAGGGCTCGCCCAGGAcccgacc                                                                                                                  >  2:524273/1‑138 (MQ=255)                     ccTTTCAGGAGTGCGACATGGTGGGGATTTCGCGACCGGTGGTTAAGCACAGCTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGtt                                                                                                             <  1:239513/143‑1 (MQ=255)                      cTTTCAGGAGTGCGACATGGTGGGGATTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGCAAAAAGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTg                                                                                                            >  1:641197/1‑143 (MQ=255)                                 gctaCATGGTGGGGATTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGGAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGaaa                                                                                                 <  2:508179/140‑1 (MQ=255)                                    aCATGGTGGGGATTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGCAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGCTTGACCGCAAggt                                                                                              >  2:567734/1‑141 (MQ=255)                                       tggtggGGCTTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGTCGACATGCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATAtt                                                                                           <  2:559949/143‑1 (MQ=255)                                            gggAGTTCGCGGCCGGGGTTTAACCACAGTTTTCTTGATAAGCAAACGGAAGAGATTCCGCAGGTGCTGAAAAAGGTTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTaa                                                                                      <  2:69454/143‑1 (MQ=255)                                                  tCGCGACCGGTGGTTACACTCAGTTTTGTGGTTAAGCAAACGGAAGACATTCCGCTGGTGCTGAAAAAGGTTTTCTGGTTGGCGGCAAGTGGGCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGc                                                                                <  2:108040/143‑1 (MQ=255)                                                    gcgACTGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGa                                                                              <  1:647090/143‑1 (MQ=255)                                                           gtggtTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAGAGGTATTCTTAATCGGGCGAACAAAtt                                                                       >  1:53503/1‑143 (MQ=255)                                                                  aaCACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAACTTACCCTAt                                                                >  1:502479/1‑143 (MQ=255)                                                                   acacAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATg                                                               >  2:647003/1‑143 (MQ=255)                                                                    cacaGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAATGGTCGCCCAGGACCAGTAGTCGTTGATGTGCCGAAAGACATTCTTGATCCGGCGAACAAATTACGCGATGt                                                              >  2:368382/1‑143 (MQ=255)                                                                          tttCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGcc                                                        >  1:523347/1‑143 (MQ=255)                                                                           ttCTGGTGAAGAAAGCGGAAGACAGCCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAACATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCg                                                       <  1:208188/143‑1 (MQ=255)                                                                              tGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAg                                                    >  2:429979/1‑143 (MQ=255)                                                                                 gtAAGCAAGCGGAAGACATTCCGCGGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGGCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCg                                                 <  2:520652/142‑1 (MQ=255)                                                                                     gCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCa                                             <  1:586380/143‑1 (MQ=255)                                                                                           gtaaagcATTCAGCAGGCGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGc                                       <  1:256253/137‑1 (MQ=255)                                                                                             aggACATTCCGCAGGTCCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGt                                     <  2:608728/141‑1 (MQ=255)                                                                                             aaGACCTGCCGCGGGTGCTGAGAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGt                                     <  2:456283/143‑1 (MQ=255)                                                                                             aaGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGt                                     >  1:618767/1‑143 (MQ=255)                                                                                               gACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGGTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTACGCGTTc                                   >  2:207161/1‑143 (MQ=255)                                                                                                  aTTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCCAGTGGTCGCCCAGGACCAGTACTCGTTGCTTCACCGAAAGCTATTCTTAATCCGGCCAACAACTTACCAGATGCCCGGCCGGAGCCGGTCCGTAAGCCTTCtca                                >  2:481398/1‑141 (MQ=255)                                                                                                   gtgcggaGGGGCTGAAGAAGGCTTTCTGGCTGGCGGCAAGTCGTCGCCCAGGACCAGTAGTCGTTGATTTATCGAAAGAGATTCTTAATCCCGCGAACAAATTACTCTATGTCTGGCCGGAGTCGGTCAGTATGCGTTCTTAc                               <  1:188176/137‑1 (MQ=255)                                                                                                             gCTGAACAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGCAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATTTCTGGCCGGAGTCGGTCAGTATGCGTTCTTACAATCCCacta                     <  1:60147/143‑1 (MQ=255)                                                                                                                   aaaGGCTTTCTGGCTGGCGGCAAGTGGTcgccagccagaaagcctttttc                                                                                                            <  2:384084‑M2/50‑23 (MQ=255)                                                                                                                   aaaGGCTTTCTGGCTGGCGGCAAGTGGTcgccagccagaaagcctttttc                                                                                                            >  1:384084‑M2/1‑28 (MQ=255)                                                                                                                        cTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGTTCTTACAATCCCACTACTACCGGACAt          >  1:131116/1‑143 (MQ=255)                                                                                                                                ctggcGGCAAGTGGTcgccagccagaaagcctttttcagcaccttcggaatgtcttccgtttgcttaaccagaaaactgtgtttaaccaccggtcgcgaactccccaccatgtcgcactcctgaacggcctcgtcacctatca  <  2:390487‑M2/143‑129 (MQ=255)                                                                                                                                              |                                                                                                                                 CTCGTTGATAGGTTACGATGCCTTTCAGGAGTGCGACATGGTGGGGATTTCGCGACCGGTGGTTAAACACAGTTTTCTGGTTAAGCAAACGGAAGACATTCCGCAGGTGCTGAAAAAGGCTTTCTGGCTGGCGGCAAGTGGTCGCCCAGGACCAGTAGTCGTTGATTTACCGAAAGATATTCTTAATCCGGCGAACAAATTACCCTATGTCTGGCCGGAGTCGGTCAGTATGCGTTCTTACAATCCCACTACTACCGGACATAAAGGGCA  >  NC_000913/85944‑86213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.