New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	270239 =	NA (NA)	4 (0.090)	4/250	NT	8.5%	noncoding (34/335 nt)	IS911	repeat region
	?	NC_000913	4507177 =	43 (0.990)					noncoding (53/334 nt)	IS911	repeat region

AAAGGCCGACATCCATAGCGCTGGCTGCATCTGCCACGGTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATCACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/270386‑270239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACA  >  NC_000913/4507177‑4507316                                                                                                                                                                                                                                                                                                   AAAGGCCGACATCCATAGCGCTGGCTGCATCTGCCACGGTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATC                                                                                                                                                    >  2:56280/1‑143  AAGGCCGACATCCATAGCGCTGGCTGCATCTGCCACGGTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATCA                                                                                                                                                   <  2:707591/143‑1    GGCCGACATCCATAGCGCTGGCTGCATCTGCCACGGTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCGGAGGTGAGCATAACACC                                                                                                                                                 >  1:160310/1‑143                                                                                   CTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATCACCTCAGAACAACACAGGTG‑TCATAATGAAAAAAAGAAATTTCAGCGCAGAG                                                                                               <  2:630650/113‑1                                                                                                                               TCTGAGGTGAGCATATCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGT                     >  1:472029/1‑143                                                                                                                                CTGAGGTGAGCATATCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGACATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTT                    >  2:909191/1‑143                                                                                                                                  GAGGTGAGCATATCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGG                  >  1:8021/1‑143                                                                                                                                              TCACCACAGAACAACGCAGGTGCGT‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAAT      <  2:134625/143‑1                                                                                                                                               aatgTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATG     <  1:732774/139‑1                                                                                                                                               CACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACCGGTTGTTGACCAGAAATACACGGTGGCACATGCCGCGAAAGACATGGAGGTTGGCCTTTCCACAATG     >  2:348691/1‑143                                                                                                                                                 CCTCAGAACAACACCGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGGTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGAC   <  1:635471/143‑1                                                                                                                                                  CTCAGGACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTATAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCATTTCCACAATGACA  >  2:758556/1‑143                                                                                                                                                  CTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGGAGCGAAAGCTATGGATGTTGGGCTGTCAAGAATGAaa  >  1:37941/1‑141                                                                                                                                                                                                                                                                                                   AAAGGCCGACATCCATAGCGCTGGCTGCATCTGCCACGGTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATCACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/270386‑270239 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACA  >  NC_000913/4507177‑4507316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.