New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	270239 =	NA (NA)	4 (0.090)	4/250	NT	8.5%	noncoding (34/335 nt)	IS911	repeat region
	?	NC_000913	4507177 =	43 (0.990)					noncoding (53/334 nt)	IS911	repeat region

CTACGGTTCCGTCGCATTGCTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACA  >  NC_000913/4507037‑4507316                                                                                                                                             |                                                                                                                                             cTACGGTTCCGTCGCATTGCTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGGCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGAGTTGCGCCCCTCaaa                                                                                                                                            >  2:215412/1‑141 (MQ=255)              gCATTGCTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGACCCACACAGGTGc                                                                                                                               >  1:596334/1‑143 (MQ=255)                aTTGCTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTc                                                                                                                             <  2:855624/143‑1 (MQ=255)                    cTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAAt                                                                                                                        >  2:381262/1‑143 (MQ=255)                     ttGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATTCTCCCCTCAGAACAACACAGGTCCAC‑CAATg                                                                                                                       >  1:135467/1‑143 (MQ=255)                      tGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGa                                                                                                                      <  1:34501/143‑1 (MQ=255)                          aTTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGaaaaa                                                                                                                  >  1:912988/1‑143 (MQ=255)                            tGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTCAACAGAGGTGATATACTTACCTCAGAACAACAAAGGTGCTC‑AAATGaaaaaaa                                                                                                                >  1:404650/1‑143 (MQ=255)                              gTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTAGCACACTGAATTTGGACACCTGAACAGAGGTGATATGCTCACCTCCGAACACCACAGGTGCTC‑CAATGAAAAAAAGa                                                                                                              >  2:13098/1‑143 (MQ=255)                               tataTTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGaa                                                                                                             <  1:672747/143‑1 (MQ=255)                                 tatTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGACCAGAGGTGATATGCTCACCTCAGCACAACCCCGGTGCTC‑CAATGAAAAAAAGAAAt                                                                                                           >  2:123632/1‑143 (MQ=255)                                 tatTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAAt                                                                                                           <  2:11029/143‑1 (MQ=255)                                  atTCCTGACGTTCTTCATGCGTCCAGATAAGTCAGTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAAtt                                                                                                          <  1:507101/143‑1 (MQ=255)                                           gTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCag                                                                                                 >  2:420936/1‑143 (MQ=255)                                           gTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCag                                                                                                 >  1:268126/1‑143 (MQ=255)                                                tcATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGGTATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGttt                                                                                            >  1:456194/1‑143 (MQ=255)                                                tcATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGttt                                                                                            >  1:347418/1‑143 (MQ=255)                                                 cATGGGTCCAGATAAGTCAGTGTAAAAGTCGAATCAGGGCTGAAATGGCACACTGAATTTGGCCACCTGAACAGAGGTGATAAGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTa                                                                                           <  2:199738/143‑1 (MQ=255)                                                      gTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGCGTTTACAcgc                                                                                      >  2:815387/1‑143 (MQ=255)                                                       tCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCGCACTGAATTTGGCGACCTGAACAGTGGTGTTATGCTCACCTCAGAACAACACAGGTGCTC‑CTATGAAAAATAGAAATTGCAGCGCAGCGTGTAAAggcg                                                                                     >  2:318065/1‑143 (MQ=21)                                                          aGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAAt                                                                                  >  2:164489/1‑143 (MQ=255)                                                              aaatCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGc                                                                              <  2:82448/140‑1 (MQ=255)                                                              aaGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGATTAAACGCGAATCCGc                                                                              >  1:863531/1‑143 (MQ=255)                                                                gTCATTGTAAAAGTCGAATCAGGGCGGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATACAAGAGTGATGGTTGAGCGCGGAGGTTAAACGCGaagcggcgc                                                                            >  1:378233/1‑136 (MQ=21)                                                                 tCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGATTAAACGCGAATCCGCTCa                                                                           >  2:512641/1‑143 (MQ=255)                                                                       tAAAACTAGAATCAAGCCTGAAGTGGCACACTAAATTTAGCCACCTAAACAGAAGTGATATGCTCACCACAAAACAACACAGGTGAAC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGgt                                                                     <  2:68222/143‑1 (MQ=14)                                                                           ctctgcgctgaaatttctttttttcattatgacacctgtgttgttctgaggtgagcatatcacctcAGAACAACACAGGTG‑TCATAATGAAAAAAAGAAATTTCAGCGCagag                                                                                               <  2:630650‑M2/47‑1 (MQ=255)                                                                              cGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGAc                                                              >  2:763750/1‑143 (MQ=255)                                                                                aaTCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCa                                                            <  1:481533/143‑1 (MQ=255)                                                                                      ggCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATa                                                      >  2:262054/1‑143 (MQ=255)                                                                                        cTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATaca                                                    >  1:703981/1‑143 (MQ=255)                                                                                          gAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACg                                                  >  1:836687/1‑143 (MQ=255)                                                                                             gTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTg                                               <  1:882709/143‑1 (MQ=255)                                                                                              tGGCGCACCGAATGTGGCCACCTGCACAGAGGAGATATGCTCACCTCCGAACAACACAGGTGAAA‑AAAAAAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTgg                                              <  2:203724/143‑1 (MQ=14)                                                                                                gCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAACAAAGCAATTTCAGCGCAGAGTTTAAACGCGCATCCGCTCAACTGGTTGTTGACCAGAAATACAcggcggaa                                            >  2:317244/1‑141 (MQ=255)                                                                                                  acacTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACAAGAAATACACGGTGGCAGa                                          >  2:606216/1‑143 (MQ=255)                                                                                                      tGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGCACTGCACGGTGGCAGATGcc                                      >  1:809685/1‑143 (MQ=255)                                                                                                               ccACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCt                             >  2:103052/1‑143 (MQ=255)                                                                                                                cACCTGAACAGAGGTGATATGCTCACCACAGCGCCAAGAAGCCACTG‑CGATGAAAACAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTa                            <  2:885499/143‑1 (MQ=17)                                                                                                                  ccTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATg                          <  2:268126/143‑1 (MQ=255)                                                                                                                       tctgaggtgagcatatcacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGt                     >  1:472029‑M2/23‑143 (MQ=255)                                                                                                                        ctgaggtgagcatatcacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGACATACACGGTGGCAGATGCCGCGAAAGCTATGGATGtt                    >  2:909191‑M2/22‑143 (MQ=255)                                                                                                                        cAGATGTGATATGCTCACCTCAGAACTTCACTTGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGCTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGtt                    <  1:111614/143‑1 (MQ=18)                                                                                                                         agagGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTg                   <  1:767387/143‑1 (MQ=255)                                                                                                                          gaggtgagcatatcacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTgg                  >  1:8021‑M2/20‑143 (MQ=255)                                                                                                                           agGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGc                 >  2:743467/1‑143 (MQ=255)                                                                                                                              tGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCtt              >  1:368556/1‑143 (MQ=255)                                                                                                                                atatGCGCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGACAGATGCCTCGAAAGCTATGGATGTTGGCCTTTc            <  1:576968/143‑1 (MQ=255)                                                                                                                                 tatGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGTTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTcc           <  2:456194/143‑1 (MQ=255)                                                                                                                                  atGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTGAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCca          >  1:574679/1‑143 (MQ=255)                                                                                                                                     cTCACCTCAGAACAGCACAGGTGCTC‑CAATGAAAAAAAGAGGTGTCCGCGCAGAGCTTAAAAGAGAATCCGCGCAACGGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACaa       <  1:381262/143‑1 (MQ=255)                                                                                                                                      tcaccacAGAACAACGCAGGTGCGT‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAAt      <  2:134625‑M2/136‑1 (MQ=255)                                                                                                                                       cacctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACCGGTTGTTGACCAGAAATACACGGTGGCACATGCCGCGAAAGACATGGAGGTTGGCCTTTCCACAATg     >  2:348691‑M2/7‑143 (MQ=255)                                                                                                                                       aatgtcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATg     <  1:732774‑M2/137‑1 (MQ=255)                                                                                                                                         cctcAGAACAACACCGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGGTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGAc   <  1:635471‑M2/139‑1 (MQ=255)                                                                                                                                          ctcAGGACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTATAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCATTTCCACAATGACa  >  2:758556‑M2/4‑143 (MQ=255)                                                                                                                                          ctcAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGGAGCGAAAGCTATGGATGTTGGGCTGTCAAGAAtgaaa  >  1:37941‑M2/4‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             CTACGGTTCCGTCGCATTGCTTGTTATTGGTATATTCCTGACGTTCTTCATGCGTCCAGATAAGTCATTGTAAAAGTCGAATCAGGGCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTC‑CAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACA  >  NC_000913/4507037‑4507316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.