New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1223991	47 (1.030)	5 (0.110)	4/252	NT	9.9%	intergenic (+84/+288)	ycgI/minE	protein YcgI/Z‑ring positioning protein MinE
	?	NC_000913	= 1223997	46 (1.050)					intergenic (+90/+282)	ycgI/minE	protein YcgI/Z‑ring positioning protein MinE

GCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1223846‑1223991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccGTAACTGGCGGGCTTTTTTTGCCCCAGAATTTTCCCTTTCAACATCCTGTAAACGAAA  <  NC_000913/1223997‑1223940                                                                                                                                                                                                              aCCATTGTTCCGGTTTTAAATCCACGTGGAACGCGGTGGCCGGAGAGAACGGGTCGTTCTGACCATCAACGATGAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCC                                                               <  1:31599/142‑1                 GGAAGCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCGTAACTGGCGGGC                                               <  1:178005/143‑1                     cCCCCGTGGCACGCGGTGGCTGGTGTGAACTGCTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCGTAACTGGCGGGCTTTT                                           <  1:539574/142‑1                                      GGCTGGTGGGAACTGGTCGGTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCGTAACTGGCGGGCTTTTTTTGCCCCAGAATTTTC                          <  1:160360/143‑1                                                              acaATCCACGATTAAACTGCGCTTCGGCGATGTTTTCGTTTACAGGTTGTTGAAAGGGAAAATTCTGGGGCCAAAAAAGCCCGCCGTAACTGGCGGGCTTTTTTTGCCCCAGAATTTTCCCTTTCAACATCCTGTAAACGAAA  <  1:229633/140‑1                                                              ACCGTCAGCGATTACACTGCGCTTCGGCGCAGTTTTCGGTGACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCCGTAACTGGCGGGCTTTTTTTGCCCCAGAATTTTCCCTTTCAACATCCTGTAAACGAAA  <  1:44871/143‑1                                                                                                                                                                                                              GCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGTGAACTGGTCGTTCTGACCATCAACGATTAAACTGCGCTTCGGCGCAGTTTTCGTTTACAGGATGTTGAAAGGGAAAATTCTGGGGCAAAAAAAGCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1223846‑1223991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgccGTAACTGGCGGGCTTTTTTTGCCCCAGAATTTTCCCTTTCAACATCCTGTAAACGAAA  <  NC_000913/1223997‑1223940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.