New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	169739 =	44 (0.960)	5 (0.120)	4/246	NT	11.1%	intergenic (+12/‑39)	fhuA/fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit
	?	NC_000913	169759 =	39 (0.910)					intergenic (+32/‑19)	fhuA/fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit

CTGGCTCCAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTC  >  NC_000913/169597‑169869                                                                                                                                               |                                                                                                                                   tccggtcactttcacggcaagaaaggttaacgacagcgggtgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatg                                                                                                                                    >  1:493905‑M1/143‑143 (MQ=255) atggctCGAACGTGGCGCTGAATGATAACAACCTGTTCGATCGTGACTACGGCGCCAGCTGCTTTGACACTTATAGGTGCTTCTGGGGCGCAGAACGTCGGGTCGTTGCAACCGCACCCTTCCATCTATAACTTCTCTTTTgg                                                                                                                                    >  2:371010/2‑143 (MQ=255)  tggctCGAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTggg                                                                                                                                   <  1:689305/143‑1 (MQ=255)  tggctCCAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTggg                                                                                                                                   <  1:646162/143‑1 (MQ=255)  tggctCCAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTggg                                                                                                                                   >  1:537033/1‑143 (MQ=255)    ggtcactttcccggcaggaaaggttaacgacagcggatgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgattcgtgtattccagcataacagccaacttgtgaaatGGGc                                                                                                                                 <  2:729495‑M1/4‑1 (MQ=255)      tcactttcccggcaggaaaggttaacgacagcggatgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCAc                                                                                                                               <  1:843516‑M1/6‑1 (MQ=255)       ccAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGCGCACg                                                                                                                              >  1:729495/1‑143 (MQ=255)         ctttcccggcaggaaaggttaacgacagcggatgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgatgcgtgtattcctgcagaacagccaacttgtgaaatGGGCACGGa                                                                                                                            <  2:767627‑M1/9‑1 (MQ=255)          aCGTGGTGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGAt                                                                                                                           <  1:435285/143‑1 (MQ=255)              ggCGCTGCATGTTAACCACCTGTTCGTTCGTGAATACGTCGCCCGATCCTTGATGGCTCCCGGCCACCGTCCTGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTcc                                                                                                                       <  2:889412/143‑1 (MQ=255)                   aggaaaggttaacgccagcggatgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGcc                                                                                                                  >  1:810361‑M1/125‑143 (MQ=255)                    gggaaggttaacgacagctgttgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagttgtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGccc                                                                                                                 >  2:851155‑M1/124‑143 (MQ=255)                    ggaaaggttaacgaaagcggatgcaaaagcgtgcgcccgggcacacgaaaggagatattacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGccc                                                                                                                 >  2:833367‑M1/124‑143 (MQ=255)                        gTTAACCACCTTTGCGATCGTGAATACGGCGCCAGCTGCTTTAACACTTATGGCTGCTTCGGGGGCGCCGAACGTCAGGTCGTTGCAACCGCACCCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCAttt                                                                                                             <  2:687389/143‑1 (MQ=255)                         ttAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGATTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTc                                                                                                            >  1:110892/1‑143 (MQ=255)                              aacCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTGTCAACCGCCCCCACCCGCCTCGTGTTTCTCTTTTGGGGCACGGCTTTCCGTGCCCATTCCACAAg                                                                                                       >  1:381654/1‑143 (MQ=255)                                  tGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTgg                                                                                                   >  1:855027/1‑143 (MQ=255)                                    ttCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCACTTCACAAGTCGGcg                                                                                                 >  2:526621/1‑142 (MQ=255)                                     tCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTg                                                                                                <  1:337294/143‑1 (MQ=255)                                       gATCGTGAATACGTCGCCAGCGGCTTTAACACTTATGGCTGCTCCTCGGACTCAGAATGTTCGGCCTTTTGTACCGCAACCTTCCGTTTCTAATTTCTCTTGTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGtt                                                                                              <  2:645404/143‑1 (MQ=255)                                           gTGAATACGTCGCCGGCTGCTTTAACACTTAGGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGc                                                                                          <  2:712577/143‑1 (MQ=255)                                           gTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCCCGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGc                                                                                          >  1:672962/1‑143 (MQ=255)                                            tGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCATACGTATCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCa                                                                                         >  1:442546/1‑143 (MQ=255)                                                tACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGaa                                                                                     <  1:632217/143‑1 (MQ=255)                                                   gTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTCCGAATTCCTGTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATac                                                                                  <  1:341428/143‑1 (MQ=255)                                                     gaacAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATacac                                                                                <  1:744371/140‑1 (MQ=255)                                                            tgctTTAACACTTATGGCTGCTTCTGGGGCGACGAACGTACGATCTGTGCATCCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCAt                                                                         >  1:172192/1‑143 (MQ=255)                                                              ctTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGGTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTc                                                                       <  2:10124/143‑1 (MQ=255)                                                               tttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGACACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                      >  2:689687/1‑143 (MQ=255)                                                               tttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCACAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCAGTTCGCAAGTTGGCTGTTATGCAGCACTACAGGACTCATTct                                                                      >  2:863493/1‑142 (MQ=255)                                                               tgtAACACTTGTGCCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                      <  2:180290/141‑1 (MQ=255)                                                               tgtAACACTTATGGCTTCTTCTGGGACGTTTTACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGTGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                      <  2:881918/141‑1 (MQ=255)                                                                ttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGCTATGCAGGAATACACGAATCATTCCg                                                                     >  2:280385/1‑143 (MQ=255)                                                                 tAACATTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGa                                                                    <  1:85927/143‑1 (MQ=255)                                                                   acacTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCCGGAATACACGCATCATTCCGATa                                                                  >  1:183678/1‑143 (MQ=255)                                                                         aTGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtt                                                            <  1:772899/143‑1 (MQ=255)                                                                           ggCTGCTTCTTGGGCGCAGTACGTCAGGTCGTTGCTATCGCATCTTTTCGTTTCTAATTTCTCATTTGGGGCACGGAGTTCCATGCCCATTTCACAAGGTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtttt                                                          <  1:451201/143‑1 (MQ=255)                                                                              tgctgcTGGGGCGCAGAACGTCAGGTCGTTCCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCa                                                       <  1:356176/143‑1 (MQ=255)                                                                              tgctTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCa                                                       >  1:590829/1‑143 (MQ=255)                                                                              tgctTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTATAATTTCTCTTTTGGGGCACGGATTTACGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAGTCATTCCGATAACACTTTTACa                                                       >  2:552571/1‑143 (MQ=255)                                                                              tacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGaa                                                                             >  1:162431‑M1/66‑121 (MQ=255)                                                                              tacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGaa                                                                             <  2:162431‑M1/56‑1 (MQ=255)                                                                                ctTCTGGGGCGCCTAATGTCGGGTCGTTGCAACCGCAACCTGCCGTTTCTCGTTTCTCTGTTGGGGCACGGATTTCCGTGCCCATTTCACCAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtttaaagga                                                     <  2:317125/143‑7 (MQ=255)                                                                                        gcgcAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAata                                             <  1:825471/143‑1 (MQ=255)                                                                                                   ccggTCGCTGCACCCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCgt                                  <  1:139270/141‑1 (MQ=255)                                                                                                    aGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCgtg                                 <  2:347494/143‑1 (MQ=255)                                                                                                           tGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCgg                          >  2:18092/1‑143 (MQ=255)                                                                                                              aaccgcaaccTTCCGTTTCTAATTTCTCTTTTGAGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGACCGGgcg                       <  2:235042/143‑1 (MQ=255)                                                                                                                ccgcatccTTCTGTGTCTTTTTTCTCTTTTGGGTCTCGGATTTCCGTGCCCGTTTCACATGTTGCCTGTTCTGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCa                     <  2:807453/143‑1 (MQ=255)                                                                                                                   caaccTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTTCGTAATATCTCCTTTATTGTGACCAGCCGCAcag                  >  1:723071/1‑141 (MQ=255)                                                                                                                      ccTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTTTGCGGTAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCttt               <  1:522132/143‑1 (MQ=255)                                                                                                                         gccGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCATAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGc            <  2:344729/142‑1 (MQ=255)                                                                                                                           cGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCCCGCTTTTGGAt          >  1:839162/1‑143 (MQ=255)                                                                                                                               tCTAATTTCTCTTTTGGTGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGc      <  1:481178/143‑1 (MQ=255)                                                                                                                               tCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATccac      <  2:405684/143‑3 (MQ=255)                                                                                                                                   aTTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTc  <  2:855027/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                   CTGGCTCCAACGTGGCGCTGCATGTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTC  >  NC_000913/169597‑169869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.