New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	169739 =	44 (0.960)	5 (0.120)	4/246	NT	11.1%	intergenic (+12/‑39)	fhuA/fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit
	?	NC_000913	169759 =	39 (0.910)					intergenic (+32/‑19)	fhuA/fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit

GTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAGTGACCGGT  >  NC_000913/169620‑169900                                                                                                                                            |                                                                                                                                              gTTAACCACCTTTGCGATCGTGAATACGGCGCCAGCTGCTTTAACACTTATGGCTGCTTCGGGGGCGCCGAACGTCAGGTCGTTGCAACCGCACCCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCAttt                                                                                                                                            <  2:687389/143‑1 (MQ=255)  ttAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGATTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTc                                                                                                                                           >  1:110892/1‑143 (MQ=255)       aacCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTGTCAACCGCCCCCACCCGCCTCGTGTTTCTCTTTTGGGGCACGGCTTTCCGTGCCCATTCCACAAg                                                                                                                                      >  1:381654/1‑143 (MQ=255)           tGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTgg                                                                                                                                  >  1:855027/1‑143 (MQ=255)             ttCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCACTTCACAAGTCGGcg                                                                                                                                >  2:526621/1‑142 (MQ=255)              tCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTg                                                                                                                               <  1:337294/143‑1 (MQ=255)                gATCGTGAATACGTCGCCAGCGGCTTTAACACTTATGGCTGCTCCTCGGACTCAGAATGTTCGGCCTTTTGTACCGCAACCTTCCGTTTCTAATTTCTCTTGTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGtt                                                                                                                             <  2:645404/143‑1 (MQ=255)                    gTGAATACGTCGCCGGCTGCTTTAACACTTAGGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGc                                                                                                                         <  2:712577/143‑1 (MQ=255)                    gTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCCCGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGc                                                                                                                         >  1:672962/1‑143 (MQ=255)                     tGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCATACGTATCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCa                                                                                                                        >  1:442546/1‑143 (MQ=255)                         tACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGaa                                                                                                                    <  1:632217/143‑1 (MQ=255)                            gTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTCCGAATTCCTGTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATac                                                                                                                 <  1:341428/143‑1 (MQ=255)                              gaacAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATacac                                                                                                               <  1:744371/140‑1 (MQ=255)                                     tgctTTAACACTTATGGCTGCTTCTGGGGCGACGAACGTACGATCTGTGCATCCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCAt                                                                                                        >  1:172192/1‑143 (MQ=255)                                       ctTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGGTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTc                                                                                                      <  2:10124/143‑1 (MQ=255)                                        tttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGACACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                                                     >  2:689687/1‑143 (MQ=255)                                        tttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCACAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCAGTTCGCAAGTTGGCTGTTATGCAGCACTACAGGACTCATTct                                                                                                     >  2:863493/1‑142 (MQ=255)                                        tgtAACACTTGTGCCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                                                     <  2:180290/141‑1 (MQ=255)                                        tgtAACACTTATGGCTTCTTCTGGGACGTTTTACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGTGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTcc                                                                                                     <  2:881918/141‑1 (MQ=255)                                         ttAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGCTATGCAGGAATACACGAATCATTCCg                                                                                                    >  2:280385/1‑143 (MQ=255)                                          tAACATTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGa                                                                                                   <  1:85927/143‑1 (MQ=255)                                            acacTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCCGGAATACACGCATCATTCCGATa                                                                                                 >  1:183678/1‑143 (MQ=255)                                                  aTGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtt                                                                                           <  1:772899/143‑1 (MQ=255)                                                    ggCTGCTTCTTGGGCGCAGTACGTCAGGTCGTTGCTATCGCATCTTTTCGTTTCTAATTTCTCATTTGGGGCACGGAGTTCCATGCCCATTTCACAAGGTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtttt                                                                                         <  1:451201/143‑1 (MQ=255)                                                       tgctgcTGGGGCGCAGAACGTCAGGTCGTTCCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCa                                                                                      <  1:356176/143‑1 (MQ=255)                                                       tgctTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCa                                                                                      >  1:590829/1‑143 (MQ=255)                                                       tgctTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTATAATTTCTCTTTTGGGGCACGGATTTACGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAGTCATTCCGATAACACTTTTACa                                                                                      >  2:552571/1‑143 (MQ=255)                                                       tacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGaa                                                                                                            >  1:162431‑M1/66‑121 (MQ=255)                                                       tacgcagtgcaaaagtggtatcggaatgattcgtgtattcctgcataacagccaacttgtgaaatGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGaa                                                                                                            <  2:162431‑M1/56‑1 (MQ=255)                                                         ctTCTGGGGCGCCTAATGTCGGGTCGTTGCAACCGCAACCTGCCGTTTCTCGTTTCTCTGTTGGGGCACGGATTTCCGTGCCCATTTCACCAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACtttaaagga                                                                                    <  2:317125/143‑7 (MQ=255)                                                                 gcgcAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAata                                                                            <  1:825471/143‑1 (MQ=255)                                                                            ccggTCGCTGCACCCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCgt                                                                 <  1:139270/141‑1 (MQ=255)                                                                             aGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCgtg                                                                <  2:347494/143‑1 (MQ=255)                                                                                    ttcgtgtattcctgcataacagccaacttgtgaaatgggcacggaaatccgtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTa                                                                               <  2:162431‑M2/65‑1 (MQ=255)                                                                                    ttcgtgtattcctgcataacagccaacttgtgaaatgggcacggaaatccgtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTa                                                                               >  1:162431‑M2/57‑121 (MQ=255)                                                                                    tGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCgg                                                         >  2:18092/1‑143 (MQ=255)                                                                                       aaccgcaaccTTCCGTTTCTAATTTCTCTTTTGAGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGACCGGgcg                                                      <  2:235042/143‑1 (MQ=255)                                                                                         ccgcatccTTCTGTGTCTTTTTTCTCTTTTGGGTCTCGGATTTCCGTGCCCGTTTCACATGTTGCCTGTTCTGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCa                                                    <  2:807453/143‑1 (MQ=255)                                                                                            caaccTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTTCGTAATATCTCCTTTATTGTGACCAGCCGCAcag                                                 >  1:723071/1‑141 (MQ=255)                                                                                               ccTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTTTGCGGTAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCttt                                              <  1:522132/143‑1 (MQ=255)                                                                                                  gccGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCATAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGc                                           <  2:344729/142‑1 (MQ=255)                                                                                                    cGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCCCGCTTTTGGAt                                         >  1:839162/1‑143 (MQ=255)                                                                                                        tCTAATTTCTCTTTTGGTGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGc                                     <  1:481178/143‑1 (MQ=255)                                                                                                        tCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATccac                                     <  2:405684/143‑3 (MQ=255)                                                                                                            aTTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTc                                 <  2:855027/143‑1 (MQ=255)                                                                                                                        gggcacggaaatccgtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTTTCGTTAACCTTTcc                     >  2:833367‑M2/21‑143 (MQ=255)                                                                                                                        gggcacggaaatccgtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACAACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCAACAGCTGTCGTTAACCTTccc                     >  2:851155‑M2/21‑143 (MQ=255)                                                                                                                         ggcacggaaatccgtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGGCGTTAACCTTTCCt                    >  1:810361‑M2/20‑143 (MQ=255)                                                                                                                            ACGGCTTTCCGGGCCCATGGCACAAGTGCGGTTTTATGAAGGACTACACGAATCATTCCGAGACCACTTTTGCACTGCGTAATATCTGCTGTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGcc                 >  1:392212‑M1/1‑143 (MQ=255)                                                                                                                                  ttCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGaaa           <  2:866455/143‑1 (MQ=255)                                                                                                                                   tccgtgcccATTTCACAAGTTGGCTGTTCTGCAGGAATACACGCATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAg          <  2:767627‑M2/134‑1 (MQ=255)                                                                                                                                      gtgcccATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAGTGa       <  1:843516‑M2/137‑1 (MQ=255)                                                                                                                                        gcccATTTCACAAGTTGGCTGTTATGCTGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAGTGAcc     <  2:729495‑M2/139‑1 (MQ=255)                                                                                                                                           cATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCACCCGCTGTCGTTAACCTTTCTTGCCGTGAAAGTGACcgga  >  1:493905‑M2/2‑142 (MQ=255)                                                                                                                                            |                                                                                                                                              GTTAACAACCTGTTCGATCGTGAATACGTCGCCAGCTGCTTTAACACTTATGGCTGCTTCTGGGGCGCAGAACGTCAGGTCGTTGCAACCGCAACCTTCCGTTTCTAATTTCTCTTTTGGGGCACGGATTTCCGTGCCCATTTCACAAGTTGGCTGTTATGCAGGAATACACGAATCATTCCGATACCACTTTTGCACTGCGTAATATCTCCTTTCGTGTGCCCGGGCGCACGCTTTTGCATCCGCTGTCGTTAACCTTTCCTGCCGGGAAAGTGACCGGT  >  NC_000913/169620‑169900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.