New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 689755	35 (0.760)	3 (0.070)	3/256	NT	8.0%	coding (1127/1539 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_000913	= 689762	35 (0.790)					coding (1120/1539 nt)	lnt	apolipoprotein N‑acyltransferase

ATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTG  >  NC_000913/689615‑689896                                                                                                                                             |                                                                                                                                              aTGGACCAATAGATTTACCAAACCACGCAACGTTGGAGATAGTCAGCAGATAGTCGGTAGCCCGGCGGAAATTATCGCGCACTTGCTCGCCGAGCATGATCTCGTAGGAAATCACCGCAATCACACCAATACAATATACCGAc                                                                                                                                             >  2:728688/1‑143 (MQ=255)            tgttttCCAAACGACGTTCCGTCGGAGATAGTCGGCATTTAGTAGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAAGAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTg                                                                                                                                  <  2:173946/141‑1 (MQ=255)             aTTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGGTCGCCGAGAATGATCTCGTAGCAAATAGCCGCCGTAAGCTAAATGCAAGTTGCGGACGGCGGCGGCTgg                                                                                                                                 >  2:353730/1‑143 (MQ=255)               ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGccgctgtcggcaaatg                                                                                                                               <  2:802578‑M1/143‑17 (MQ=255)                 gccaggccACGCGTCGTGGGAGATAGTCAGCAGATAGGCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATCACCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatat                                                                                                                             <  2:849126/137‑1 (MQ=255)                   cAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                                                                                                           >  1:847206/1‑143 (MQ=255)                         aCGCATCGTTGGAGATAGTCAGCATATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCa                                                                                                                     <  2:776768/143‑1 (MQ=255)                           gCATCGTCGGAGAGAGACAGCAGATAGCCGGTAGCCGGGCGGAAGTGATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACg                                                                                                                   <  1:329840/143‑1 (MQ=255)                             aTCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGGATGATCTCGTCGCAAATAGCCGCAGTCAGCTCAATACCATTTGCCGACAGCGACGGCTGGAAACATGGACCAcacc                                                                                                                 >  2:333958/1‑140 (MQ=255)                              tCGTGGGTGATAGTGAGCAGATAGTCGATATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCt                                                                                                                <  1:671277/143‑1 (MQ=255)                                gTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTCGCCGCCACCGGCGGCTGGATCTACGACCCACGGCTGa                                                                                                              >  1:740348/1‑143 (MQ=255)                                 ttGGAGATAGTCAGCGGATAGTCCGTATCCGTGCGTAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCCATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGaa                                                                                                             <  2:749558/143‑1 (MQ=255)                                             agcaaACAGTCGGTATCGGGGAGGAAGTGATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCgg                                                                                                 <  1:508065/143‑1 (MQ=255)                                              gcagATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCGGGATATATGGCCCACGGCTGAACGACGCCATCGGc                                                                                                >  2:532552/1‑143 (MQ=255)                                                           aTCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTCGCTATCTGGCCCACGGCTGAACGACGGCCTCGCCCGAACGAAGAACg                                                                                   >  2:816175/1‑143 (MQ=255)                                                            gacggacggaAGGTATCGCGGAGGTGCTGGCAGAGAATGAGGTCGTAGCAAAGAGCCGCAGTAAGCGGAATACCATTGGCCGACAGCGGCGGCTGGATATATGGCGCACGGCTGAACGACGACATCGGCAGATCAAAGAACgg                                                                                  <  2:376863/141‑1 (MQ=255)                                                             gcGGGCGGTAGGGATCGCGCCCTGGCTCGCCGAGACTGATCTCGTAGCAAGTAGCCGCAGTAAGCTCATTACCGTTTGCCGACATCGGCGGCTGGATAGAGGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGt                                                                                 <  2:149766/142‑1 (MQ=255)                                                                   tgAAGTTAGCGCGCACGTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAGTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAAc                                                                           <  2:521997/142‑1 (MQ=255)                                                                   ggAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGccgctgtcggcaaatggtattga                                                                                                                        >  1:116044‑M1/1‑75 (MQ=255)                                                                   ggAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGccgctgtcggcaaatggtattga                                                                                                                        <  2:116044‑M1/98‑24 (MQ=255)                                                                    gAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCAGGAAGCGGCGGCTGGATATCCGGCCCACGGCTGAACGACGACATCGGGCGATCAAAGAACGTTGCAAACg                                                                          >  1:464120/1‑143 (MQ=255)                                                                     aaGTGAGCGCGCCCTTCCTCGCCGAGACTGTTCTCGTAGCGAATAGCCGCAGTAAGCTCACTACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACgg                                                                         <  2:124340/143‑1 (MQ=255)                                                                            cgcgCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAGCGACGAGAGAGGGAGGTACAAGCACGGTGCCAACGGACGCCGa                                                                  >  1:164966/1‑143 (MQ=255)                                                                                    tGCGCGCCGAGAATGAGCGCGTAGCAAATAGCCGCAGTAAGCTCAATACCATGTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTc                                                          <  1:167277/143‑1 (MQ=255)                                                                                                   aTCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCCGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAAccc                                           >  1:260865/1‑141 (MQ=255)                                                                                                       cGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCa                                       >  2:609727/1‑143 (MQ=255)                                                                                                         tAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCCCGGCTGCACGACGACATCGGCAGAACAAAGAACGCTGCTAACGGACGAAGAATCGACTCCAGCGGAGGCAACTCACCaaa                                     >  2:340627/1‑143 (MQ=255)                                                                                                           gCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTAACGGACGCAGACTCGACTCCAGCGGGACAAATTAGCCAAAca                                   >  1:286183/1‑142 (MQ=255)                                                                                                               agaGCCGCAGTAAGCTCAATCCCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCAc                               <  1:507363/141‑1 (MQ=255)                                                                                                                   ccGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                           >  1:317587/1‑143 (MQ=255)                                                                                                                     gCAGTAAGCACCAAACCATTTTCCGACAGCGGCGGCTGGATATACGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATg                         <  1:317932/143‑1 (MQ=255)                                                                                                                         tAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTCACGCACGCAGAACCTACTCCCACGGGACAAACTCGCCAAACGGCAACAGATGGatt                     >  1:142801/1‑143 (MQ=255)                                                                                                                           aGCTCAATACCACTTGCCGACAGCGTCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGttttt                   <  2:497220/143‑1 (MQ=255)                                                                                                                            gcccatcaCCATCCGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTg                  <  2:260865/136‑1 (MQ=255)                                                                                                                            gCTCAATACCACTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGCCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTg                  <  1:251634/143‑1 (MQ=255)                                                                                                                              tCAATACCATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttcc                                                             >  1:116044‑M2/1‑23 (MQ=255)                                                                                                                              tCAATACCATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttcc                                                             <  2:116044‑M2/98‑76 (MQ=255)                                                                                                                              tCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACGCCAGCGGGACAAACTCGCCAAACGGCACACGACGGCTTCTGtt                >  2:850506/1‑143 (MQ=255)                                                                                                                                     cATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttccgcccggataccgactatctgctgactatctccaacgatgcgtggtttggtaa         <  2:802578‑M2/143‑128 (MQ=255)                                                                                                                                     cATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTAACGGACGCAGAACCGACTCCAGCGGGACAAACTCGCCAATCGGCACACGGTGGATCTTGTTATAGCGa         >  2:426818/1‑143 (MQ=255)                                                                                                                                      aTTTGCCGACAGCGGCGGCTGGAGATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTCACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGAt        <  2:79331/143‑1 (MQ=255)                                                                                                                                       tttGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGCTTTTGTTATAGCGATc       >  1:219438/1‑143 (MQ=255)                                                                                                                                       tacgCCAACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCGAACGGACGCAGAATCGACTCCAGCGGGCCAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATc       <  1:56808/140‑1 (MQ=255)                                                                                                                                            cGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTGTTTGTTATAGCGATCGGGTg  >  1:352768/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                              ATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTG  >  NC_000913/689615‑689896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.