New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 689755	35 (0.760)	3 (0.070)	3/256	NT	8.0%	coding (1127/1539 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_000913	= 689762	35 (0.790)					coding (1120/1539 nt)	lnt	apolipoprotein N‑acyltransferase

GATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGT  >  NC_000913/689626‑689902                                                                                                                                         |                                                                                                                                             tgttttCCAAACGACGTTCCGTCGGAGATAGTCGGCATTTAGTAGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAAGAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTg                                                                                                                                        <  2:173946/141‑1 (MQ=255)  aTTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGGTCGCCGAGAATGATCTCGTAGCAAATAGCCGCCGTAAGCTAAATGCAAGTTGCGGACGGCGGCGGCTgg                                                                                                                                       >  2:353730/1‑143 (MQ=255)      gccaggccACGCGTCGTGGGAGATAGTCAGCAGATAGGCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATCACCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatat                                                                                                                                   <  2:849126/137‑1 (MQ=255)        cAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                                                                                                                 >  1:847206/1‑143 (MQ=255)              aCGCATCGTTGGAGATAGTCAGCATATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCa                                                                                                                           <  2:776768/143‑1 (MQ=255)                gCATCGTCGGAGAGAGACAGCAGATAGCCGGTAGCCGGGCGGAAGTGATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACg                                                                                                                         <  1:329840/143‑1 (MQ=255)                  aTCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGGATGATCTCGTCGCAAATAGCCGCAGTCAGCTCAATACCATTTGCCGACAGCGACGGCTGGAAACATGGACCAcacc                                                                                                                       >  2:333958/1‑140 (MQ=255)                   tCGTGGGTGATAGTGAGCAGATAGTCGATATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCt                                                                                                                      <  1:671277/143‑1 (MQ=255)                     gTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTCGCCGCCACCGGCGGCTGGATCTACGACCCACGGCTGa                                                                                                                    >  1:740348/1‑143 (MQ=255)                      ttGGAGATAGTCAGCGGATAGTCCGTATCCGTGCGTAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCCATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGaa                                                                                                                   <  2:749558/143‑1 (MQ=255)                                  agcaaACAGTCGGTATCGGGGAGGAAGTGATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCgg                                                                                                       <  1:508065/143‑1 (MQ=255)                                   gcagATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCGGGATATATGGCCCACGGCTGAACGACGCCATCGGc                                                                                                      >  2:532552/1‑143 (MQ=255)                                                aTCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTCGCTATCTGGCCCACGGCTGAACGACGGCCTCGCCCGAACGAAGAACg                                                                                         >  2:816175/1‑143 (MQ=255)                                                 gacggacggaAGGTATCGCGGAGGTGCTGGCAGAGAATGAGGTCGTAGCAAAGAGCCGCAGTAAGCGGAATACCATTGGCCGACAGCGGCGGCTGGATATATGGCGCACGGCTGAACGACGACATCGGCAGATCAAAGAACgg                                                                                        <  2:376863/141‑1 (MQ=255)                                                  gcGGGCGGTAGGGATCGCGCCCTGGCTCGCCGAGACTGATCTCGTAGCAAGTAGCCGCAGTAAGCTCATTACCGTTTGCCGACATCGGCGGCTGGATAGAGGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGt                                                                                       <  2:149766/142‑1 (MQ=255)                                                        tgAAGTTAGCGCGCACGTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAGTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAAc                                                                                 <  2:521997/142‑1 (MQ=255)                                                         gAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCAGGAAGCGGCGGCTGGATATCCGGCCCACGGCTGAACGACGACATCGGGCGATCAAAGAACGTTGCAAACg                                                                                >  1:464120/1‑143 (MQ=255)                                                          aaGTGAGCGCGCCCTTCCTCGCCGAGACTGTTCTCGTAGCGAATAGCCGCAGTAAGCTCACTACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACgg                                                                               <  2:124340/143‑1 (MQ=255)                                                                 cgcgCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAGCGACGAGAGAGGGAGGTACAAGCACGGTGCCAACGGACGCCGa                                                                        >  1:164966/1‑143 (MQ=255)                                                                         tGCGCGCCGAGAATGAGCGCGTAGCAAATAGCCGCAGTAAGCTCAATACCATGTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTc                                                                <  1:167277/143‑1 (MQ=255)                                                                                        aTCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCCGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAAccc                                                 >  1:260865/1‑141 (MQ=255)                                                                                            cGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCa                                             >  2:609727/1‑143 (MQ=255)                                                                                              tAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCCCGGCTGCACGACGACATCGGCAGAACAAAGAACGCTGCTAACGGACGAAGAATCGACTCCAGCGGAGGCAACTCACCaaa                                           >  2:340627/1‑143 (MQ=255)                                                                                                gCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTAACGGACGCAGACTCGACTCCAGCGGGACAAATTAGCCAAAca                                         >  1:286183/1‑142 (MQ=255)                                                                                                    agaGCCGCAGTAAGCTCAATCCCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCAc                                     <  1:507363/141‑1 (MQ=255)                                                                                                        ccGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                 >  1:317587/1‑143 (MQ=255)                                                                                                          gCAGTAAGCACCAAACCATTTTCCGACAGCGGCGGCTGGATATACGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATg                               <  1:317932/143‑1 (MQ=255)                                                                                                              tAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTCACGCACGCAGAACCTACTCCCACGGGACAAACTCGCCAAACGGCAACAGATGGatt                           >  1:142801/1‑143 (MQ=255)                                                                                                                aGCTCAATACCACTTGCCGACAGCGTCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGttttt                         <  2:497220/143‑1 (MQ=255)                                                                                                                 gcccatcaCCATCCGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTg                        <  2:260865/136‑1 (MQ=255)                                                                                                                 gCTCAATACCACTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGCCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTg                        <  1:251634/143‑1 (MQ=255)                                                                                                                   tCAATACCATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttcc                                                                   <  2:116044‑M2/98‑76 (MQ=255)                                                                                                                   tCAATACCATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttcc                                                                   >  1:116044‑M2/1‑23 (MQ=255)                                                                                                                   tCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACGCCAGCGGGACAAACTCGCCAAACGGCACACGACGGCTTCTGtt                      >  2:850506/1‑143 (MQ=255)                                                                                                                          cATTTGCCGACAGCGGcggcaaatggtattgagcttactgcggctatttgctacgagatcattctcggcgagcaagtgcgcgataacttccgcccggataccgactatctgctgactatctccaacgatgcgtggtttggtaa               <  2:802578‑M2/143‑128 (MQ=255)                                                                                                                          cATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGCACGGTGCTAACGGACGCAGAACCGACTCCAGCGGGACAAACTCGCCAATCGGCACACGGTGGATCTTGTTATAGCGa               >  2:426818/1‑143 (MQ=255)                                                                                                                           aTTTGCCGACAGCGGCGGCTGGAGATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTCACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGAt              <  2:79331/143‑1 (MQ=255)                                                                                                                            tttGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGCTTTTGTTATAGCGATc             >  1:219438/1‑143 (MQ=255)                                                                                                                            tacgCCAACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCGAACGGACGCAGAATCGACTCCAGCGGGCCAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATc             <  1:56808/140‑1 (MQ=255)                                                                                                                                 cGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTGTTTGTTATAGCGATCGGGTg        >  1:352768/1‑143 (MQ=255)                                                                                                                                       cggcggGTGGATATATGGCACGCGGCGGAACGACGACATCGGCAGAGCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGt  <  2:432620/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                             GATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGACGACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAGAATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGT  >  NC_000913/689626‑689902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.